RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 NUTM2DQ5VT03 806 aaPredicted RBP21.56■■□□□ 1.04
CLCNKA-203ENST00000439316 DUSP27Q5VZP5 1158 aa21.55■■□□□ 1.04
CLCNKA-203ENST00000439316 STAG3Q9UJ98 1225 aa21.53■■□□□ 1.04
CLCNKA-203ENST00000439316 VGFO15240 615 aaPredicted RBP21.52■■□□□ 1.04
CLCNKA-203ENST00000439316 C20orf194Q5TEA3 1177 aa21.51■■□□□ 1.03
CLCNKA-203ENST00000439316 KDM2BQ8NHM5 1336 aa21.51■■□□□ 1.03
CLCNKA-203ENST00000439316 FER1L4A9Z1Z3 1794 aa21.5■■□□□ 1.03
CLCNKA-203ENST00000439316 GOLGA2Q08379 1002 aa21.5■■□□□ 1.03
CLCNKA-203ENST00000439316 NPM2Q86SE8 214 aaKnown RBP21.5■■□□□ 1.03
CLCNKA-203ENST00000439316 MYO3AQ8NEV4 1616 aa21.49■■□□□ 1.03
CLCNKA-203ENST00000439316 C14orf93Q9H972 538 aaKnown RBP21.48■■□□□ 1.03
CLCNKA-203ENST00000439316 TNRQ92752 1358 aa21.47■■□□□ 1.03
CLCNKA-203ENST00000439316 CEBPAP49715 358 aaPredicted RBP21.47■■□□□ 1.03
CLCNKA-203ENST00000439316 A2ML1A8K2U0 1454 aa21.47■■□□□ 1.03
CLCNKA-203ENST00000439316 SLC24A1O60721 1099 aa21.47■■□□□ 1.03
CLCNKA-203ENST00000439316 ZFYVE9O95405 1425 aa21.46■■□□□ 1.03
CLCNKA-203ENST00000439316 SLFN5Q08AF3 891 aa21.46■■□□□ 1.03
CLCNKA-203ENST00000439316 TRMT2AQ8IZ69 625 aaKnown RBP21.45■■□□□ 1.02
CLCNKA-203ENST00000439316 C3P01024 1663 aa21.45■■□□□ 1.02
CLCNKA-203ENST00000439316 SETBP1Q9Y6X0 1596 aa21.45■■□□□ 1.02
CLCNKA-203ENST00000439316 RTL5Q5HYW3 569 aaPredicted RBP21.44■■□□□ 1.02
CLCNKA-203ENST00000439316 CENPQQ7L2Z9 268 aaPredicted RBP21.44■■□□□ 1.02
CLCNKA-203ENST00000439316 SENP3Q9H4L4 574 aaPredicted RBP21.44■■□□□ 1.02
CLCNKA-203ENST00000439316 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.43■■□□□ 1.02
CLCNKA-203ENST00000439316 TMEM132EQ6IEE7 984 aa21.43■■□□□ 1.02
CLCNKA-203ENST00000439316 PLPPR3Q6T4P5 718 aa21.43■■□□□ 1.02
CLCNKA-203ENST00000439316 SKAP1Q86WV1 359 aa21.43■■□□□ 1.02
CLCNKA-203ENST00000439316 SBNO2Q9Y2G9 1366 aa21.42■■□□□ 1.02
CLCNKA-203ENST00000439316 ADGRB1O14514 1584 aa21.42■■□□□ 1.02
CLCNKA-203ENST00000439316 NKTRP30414 1462 aaKnown RBP21.41■■□□□ 1.02
CLCNKA-203ENST00000439316 RIMS2Q9UQ26 1411 aa21.39■■□□□ 1.01
CLCNKA-203ENST00000439316 CCDC146Q8IYE0 955 aa21.39■■□□□ 1.01
CLCNKA-203ENST00000439316 CARD14Q9BXL6 1004 aa21.37■■□□□ 1.01
CLCNKA-203ENST00000439316 TRAK1Q9UPV9 953 aa21.37■■□□□ 1.01
CLCNKA-203ENST00000439316 NGEFQ8N5V2 710 aa21.37■■□□□ 1.01
CLCNKA-203ENST00000439316 DDRGK1Q96HY6 314 aa21.37■■□□□ 1.01
CLCNKA-203ENST00000439316 UBR1Q8IWV7 1749 aa21.37■■□□□ 1.01
CLCNKA-203ENST00000439316 APAF1O14727 1248 aa21.36■■□□□ 1.01
CLCNKA-203ENST00000439316 SPINK5Q9NQ38 1064 aaPredicted RBP21.36■■□□□ 1.01
CLCNKA-203ENST00000439316 POLR3AO14802 1390 aaPredicted RBP21.35■■□□□ 1.01
CLCNKA-203ENST00000439316 NLRP1Q9C000 1473 aa21.34■■□□□ 1.01
CLCNKA-203ENST00000439316 E9PSI1 815 aa21.34■■□□□ 1.01
CLCNKA-203ENST00000439316 RIMS1Q86UR5 1692 aaKnown RBP21.34■■□□□ 1.01
CLCNKA-203ENST00000439316 USP35Q9P2H5 1018 aa21.33■■□□□ 1.01
CLCNKA-203ENST00000439316 SHPRHQ149N8 1683 aa21.33■■□□□ 1
CLCNKA-203ENST00000439316 ALKQ9UM73 1620 aa21.32■■□□□ 1
CLCNKA-203ENST00000439316 CENPJQ9HC77 1338 aaPredicted RBP21.31■■□□□ 1
CLCNKA-203ENST00000439316 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.31■■□□□ 1
CLCNKA-203ENST00000439316 PPM1GO15355 546 aaPredicted RBP21.3■■□□□ 1
CLCNKA-203ENST00000439316 FAM161AQ3B820 660 aa21.3■■□□□ 1
CLCNKA-203ENST00000439316 LAS1LQ9Y4W2 734 aaKnown RBP21.3■■□□□ 1
CLCNKA-203ENST00000439316 ADAMTSL3P82987 1691 aa21.3■■□□□ 1
CLCNKA-203ENST00000439316 QRICH2Q9H0J4 1663 aa21.3■■□□□ 1
CLCNKA-203ENST00000439316 USP32Q8NFA0 1604 aa21.3■■□□□ 1
CLCNKA-203ENST00000439316 TMEM2Q9UHN6 1383 aa21.3■■□□□ 1
CLCNKA-203ENST00000439316 C8orf34Q49A92 452 aa21.29■■□□□ 1
CLCNKA-203ENST00000439316 ARHGEF28Q8N1W1 1705 aaKnown RBP21.29■■□□□ 1
CLCNKA-203ENST00000439316 STK26Q9P289 416 aa21.28■■□□□ 1
CLCNKA-203ENST00000439316 HDGFP51858 240 aaKnown RBP21.28■■□□□ 1
CLCNKA-203ENST00000439316 DMRT2Q9Y5R5 561 aa21.28■■□□□ 1
CLCNKA-203ENST00000439316 NINLQ9Y2I6 1382 aa21.27■■□□□ 1
CLCNKA-203ENST00000439316 NSD3Q9BZ95 1437 aa21.27■■□□□ 1
CLCNKA-203ENST00000439316 BCAR3O75815 825 aa21.27■□□□□ 0.99
CLCNKA-203ENST00000439316 NEFMP07197 916 aa21.27■□□□□ 0.99
CLCNKA-203ENST00000439316 PTPRMP28827 1452 aa21.26■□□□□ 0.99
CLCNKA-203ENST00000439316 NRXN3Q9Y4C0 1643 aa21.25■□□□□ 0.99
CLCNKA-203ENST00000439316 YTHDC2Q9H6S0 1430 aaKnown RBP21.25■□□□□ 0.99
CLCNKA-203ENST00000439316 IQSEC2Q5JU85 1478 aa21.25■□□□□ 0.99
CLCNKA-203ENST00000439316 SETD1AO15047 1707 aaKnown RBP21.25■□□□□ 0.99
CLCNKA-203ENST00000439316 VIRMAQ69YN4 1812 aaKnown RBP21.23■□□□□ 0.99
CLCNKA-203ENST00000439316 PDE3AQ14432 1141 aa21.23■□□□□ 0.99
CLCNKA-203ENST00000439316 WWC1Q8IX03 1113 aa21.23■□□□□ 0.99
CLCNKA-203ENST00000439316 CGNL1Q0VF96 1302 aa21.22■□□□□ 0.99
CLCNKA-203ENST00000439316 LTKP29376 864 aa21.22■□□□□ 0.99
CLCNKA-203ENST00000439316 SAFB2Q14151 953 aaKnown RBP eCLIP21.21■□□□□ 0.99
CLCNKA-203ENST00000439316 TXNDC2Q86VQ3 553 aa21.2■□□□□ 0.98
CLCNKA-203ENST00000439316 MORC1Q86VD1 984 aa21.19■□□□□ 0.98
CLCNKA-203ENST00000439316 THEMISQ8N1K5 641 aaPredicted RBP21.19■□□□□ 0.98
CLCNKA-203ENST00000439316 SLIT1O75093 1534 aa21.18■□□□□ 0.98
CLCNKA-203ENST00000439316 RGS3P49796 1198 aa21.18■□□□□ 0.98
CLCNKA-203ENST00000439316 SETD1BQ9UPS6 1966 aaKnown RBP21.18■□□□□ 0.98
CLCNKA-203ENST00000439316 PRAM1Q96QH2 718 aa21.17■□□□□ 0.98
CLCNKA-203ENST00000439316 PHF23Q9BUL5 403 aaPredicted RBP21.17■□□□□ 0.98
CLCNKA-203ENST00000439316 EID1Q9Y6B2 187 aa21.17■□□□□ 0.98
CLCNKA-203ENST00000439316 METP08581 1390 aa21.17■□□□□ 0.98
CLCNKA-203ENST00000439316 ARHGAP23Q9P227 1491 aa21.17■□□□□ 0.98
CLCNKA-203ENST00000439316 CEP170BQ9Y4F5 1589 aaPredicted RBP21.17■□□□□ 0.98
CLCNKA-203ENST00000439316 RUNDC1Q96C34 613 aa21.17■□□□□ 0.98
CLCNKA-203ENST00000439316 SLC12A5Q9H2X9 1139 aa21.16■□□□□ 0.98
CLCNKA-203ENST00000439316 IGHDP01880 384 aa21.16■□□□□ 0.98
CLCNKA-203ENST00000439316 POGKQ9P215 609 aa21.16■□□□□ 0.98
CLCNKA-203ENST00000439316 PLEKHG1Q9ULL1 1385 aa21.16■□□□□ 0.98
CLCNKA-203ENST00000439316 CLUAP1Q96AJ1 413 aa21.14■□□□□ 0.98
CLCNKA-203ENST00000439316 TULP4Q9NRJ4 1543 aa21.14■□□□□ 0.97
CLCNKA-203ENST00000439316 PUS7Q96PZ0 661 aaKnown RBP21.14■□□□□ 0.97
CLCNKA-203ENST00000439316 ADAMTS13Q76LX8 1427 aa21.13■□□□□ 0.97
CLCNKA-203ENST00000439316 EVC2Q86UK5 1308 aa21.13■□□□□ 0.97
CLCNKA-203ENST00000439316 ABCC11Q96J66 1382 aa21.13■□□□□ 0.97
CLCNKA-203ENST00000439316 DLC1Q96QB1 1528 aa21.12■□□□□ 0.97
CLCNKA-203ENST00000439316 NSD2O96028 1365 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms