RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 EVA1CP58658 441 aa10.23□□□□□ -0.77
TMEM39A-202ENST00000438581 RTEL1-TNFRSF6BF6WH68 1400 aa10.23□□□□□ -0.77
TMEM39A-202ENST00000438581 NOS1P29475 1434 aa10.23□□□□□ -0.77
TMEM39A-202ENST00000438581 TCOF1Q13428 1488 aaKnown RBP10.22□□□□□ -0.77
TMEM39A-202ENST00000438581 SETQ01105 290 aaPredicted RBP10.22□□□□□ -0.77
TMEM39A-202ENST00000438581 TICAM2Q86XR7 235 aa10.22□□□□□ -0.77
TMEM39A-202ENST00000438581 SAMD9Q5K651 1589 aa10.22□□□□□ -0.77
TMEM39A-202ENST00000438581 ITSN2Q9NZM3 1697 aa10.22□□□□□ -0.77
TMEM39A-202ENST00000438581 C1orf141Q5JVX7 400 aa10.21□□□□□ -0.77
TMEM39A-202ENST00000438581 EIF2S2P20042 333 aaKnown RBP10.21□□□□□ -0.77
TMEM39A-202ENST00000438581 PRKAR2BP31323 418 aa10.21□□□□□ -0.77
TMEM39A-202ENST00000438581 XPCQ01831 940 aaPredicted RBP10.21□□□□□ -0.77
TMEM39A-202ENST00000438581 MAGI3Q5TCQ9 1506 aa10.21□□□□□ -0.77
TMEM39A-202ENST00000438581 A2MP01023 1474 aa10.21□□□□□ -0.77
TMEM39A-202ENST00000438581 NUDT16Q96DE0 195 aaKnown RBP10.21□□□□□ -0.78
TMEM39A-202ENST00000438581 CCDC61Q9Y6R9 512 aa10.21□□□□□ -0.78
TMEM39A-202ENST00000438581 ZKSCAN2Q63HK3 967 aa10.2□□□□□ -0.78
TMEM39A-202ENST00000438581 NLRP2Q9NX02 1062 aa10.2□□□□□ -0.78
TMEM39A-202ENST00000438581 RRS1Q15050 365 aaKnown RBP10.2□□□□□ -0.78
TMEM39A-202ENST00000438581 NGEFQ8N5V2 710 aa10.2□□□□□ -0.78
TMEM39A-202ENST00000438581 PSMD1Q99460 953 aa10.2□□□□□ -0.78
TMEM39A-202ENST00000438581 ZNF518AQ6AHZ1 1483 aa10.19□□□□□ -0.78
TMEM39A-202ENST00000438581 C14orf93Q9H972 538 aaKnown RBP10.19□□□□□ -0.78
TMEM39A-202ENST00000438581 KCNJ4P48050 445 aa10.19□□□□□ -0.78
TMEM39A-202ENST00000438581 RBM10P98175 930 aaKnown RBP10.19□□□□□ -0.78
TMEM39A-202ENST00000438581 DUOX2Q9NRD8 1548 aa10.18□□□□□ -0.78
TMEM39A-202ENST00000438581 NSD3Q9BZ95 1437 aa10.18□□□□□ -0.78
TMEM39A-202ENST00000438581 GPRASP1Q5JY77 1395 aa10.18□□□□□ -0.78
TMEM39A-202ENST00000438581 ZNF692Q9BU19 519 aaPredicted RBP10.18□□□□□ -0.78
TMEM39A-202ENST00000438581 USP35Q9P2H5 1018 aa10.18□□□□□ -0.78
TMEM39A-202ENST00000438581 AMOTL2Q9Y2J4 779 aa10.18□□□□□ -0.78
TMEM39A-202ENST00000438581 CHMP3Q9Y3E7 222 aa10.18□□□□□ -0.78
TMEM39A-202ENST00000438581 DEKP35659 375 aaKnown RBP10.18□□□□□ -0.78
TMEM39A-202ENST00000438581 SULT6B1Q6IMI4 303 aa10.18□□□□□ -0.78
TMEM39A-202ENST00000438581 SPRYD3Q8NCJ5 442 aa10.17□□□□□ -0.78
TMEM39A-202ENST00000438581 TSHZ2Q9NRE2 1034 aa10.17□□□□□ -0.78
TMEM39A-202ENST00000438581 ATAD2Q6PL18 1390 aa10.17□□□□□ -0.78
TMEM39A-202ENST00000438581 FAM135AQ9P2D6 1515 aa10.17□□□□□ -0.78
TMEM39A-202ENST00000438581 RAPGEF4Q8WZA2 1011 aa10.17□□□□□ -0.78
TMEM39A-202ENST00000438581 PANK1Q8TE04 598 aa10.16□□□□□ -0.78
TMEM39A-202ENST00000438581 TSPYL4Q9UJ04 414 aa10.16□□□□□ -0.78
TMEM39A-202ENST00000438581 DISP3Q9P2K9 1392 aa10.16□□□□□ -0.78
TMEM39A-202ENST00000438581 A0A0U1RQG5 324 aaPredicted RBP10.16□□□□□ -0.78
TMEM39A-202ENST00000438581 TSR2Q969E8 191 aaKnown RBP10.16□□□□□ -0.78
TMEM39A-202ENST00000438581 GNAI1P63096 354 aa10.15□□□□□ -0.78
TMEM39A-202ENST00000438581 SYTL4Q96C24 671 aaPredicted RBP10.15□□□□□ -0.78
TMEM39A-202ENST00000438581 ABCC10Q5T3U5 1492 aa10.15□□□□□ -0.78
TMEM39A-202ENST00000438581 NME9Q86XW9 330 aa10.15□□□□□ -0.78
TMEM39A-202ENST00000438581 DHX37Q8IY37 1157 aaKnown RBP10.15□□□□□ -0.78
TMEM39A-202ENST00000438581 DZIP1LQ8IYY4 767 aaKnown RBP10.15□□□□□ -0.78
TMEM39A-202ENST00000438581 PPP6R1Q9UPN7 881 aa10.14□□□□□ -0.79
TMEM39A-202ENST00000438581 NOP58Q9Y2X3 529 aaKnown RBP10.14□□□□□ -0.79
TMEM39A-202ENST00000438581 HMMRO75330 724 aa10.14□□□□□ -0.79
TMEM39A-202ENST00000438581 EXOSC9Q06265 439 aaKnown RBP10.14□□□□□ -0.79
TMEM39A-202ENST00000438581 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.14□□□□□ -0.79
TMEM39A-202ENST00000438581 IPO4Q8TEX9 1081 aaKnown RBP10.14□□□□□ -0.79
TMEM39A-202ENST00000438581 CFAP65Q6ZU64 1925 aaKnown RBP10.14□□□□□ -0.79
TMEM39A-202ENST00000438581 ZMYND15Q9H091 742 aa10.14□□□□□ -0.79
TMEM39A-202ENST00000438581 HSP90AB1P08238 724 aaKnown RBP10.13□□□□□ -0.79
TMEM39A-202ENST00000438581 FBLN1P23142 703 aa10.13□□□□□ -0.79
TMEM39A-202ENST00000438581 FKBP5Q13451 457 aaPredicted RBP10.13□□□□□ -0.79
TMEM39A-202ENST00000438581 TTC5Q8N0Z6 440 aa10.13□□□□□ -0.79
TMEM39A-202ENST00000438581 PZPP20742 1482 aa10.13□□□□□ -0.79
TMEM39A-202ENST00000438581 SCAF11Q99590 1463 aaKnown RBP10.13□□□□□ -0.79
TMEM39A-202ENST00000438581 WASLO00401 505 aaPredicted RBP10.13□□□□□ -0.79
TMEM39A-202ENST00000438581 FOXO3O43524 673 aa10.13□□□□□ -0.79
TMEM39A-202ENST00000438581 DNMT1P26358 1616 aaKnown RBP10.13□□□□□ -0.79
TMEM39A-202ENST00000438581 MFAP1P55081 439 aaKnown RBP10.13□□□□□ -0.79
TMEM39A-202ENST00000438581 ANKRD45Q5TZF3 282 aa10.13□□□□□ -0.79
TMEM39A-202ENST00000438581 TEX14Q8IWB6 1497 aa10.13□□□□□ -0.79
TMEM39A-202ENST00000438581 ZC3H6P61129 1189 aaKnown RBP10.12□□□□□ -0.79
TMEM39A-202ENST00000438581 PLCD4Q9BRC7 762 aa10.12□□□□□ -0.79
TMEM39A-202ENST00000438581 BCAR3O75815 825 aa10.12□□□□□ -0.79
TMEM39A-202ENST00000438581 TEX2Q8IWB9 1127 aa10.12□□□□□ -0.79
TMEM39A-202ENST00000438581 NAP1L2Q9ULW6 460 aaPredicted RBP10.12□□□□□ -0.79
TMEM39A-202ENST00000438581 TNRQ92752 1358 aa10.12□□□□□ -0.79
TMEM39A-202ENST00000438581 TRIM6-TRIM34B2RNG4 842 aa10.12□□□□□ -0.79
TMEM39A-202ENST00000438581 STRN4Q9NRL3 753 aa10.12□□□□□ -0.79
TMEM39A-202ENST00000438581 CENPQQ7L2Z9 268 aaPredicted RBP10.12□□□□□ -0.79
TMEM39A-202ENST00000438581 SHANK2Q9UPX8 1470 aa10.11□□□□□ -0.79
TMEM39A-202ENST00000438581 EMILIN1Q9Y6C2 1016 aa10.11□□□□□ -0.79
TMEM39A-202ENST00000438581 PRAG1Q86YV5 1406 aa10.11□□□□□ -0.79
TMEM39A-202ENST00000438581 MCCP23508 829 aa10.1□□□□□ -0.79
TMEM39A-202ENST00000438581 THUMPD2Q9BTF0 503 aaKnown RBP10.1□□□□□ -0.79
TMEM39A-202ENST00000438581 DDX19BQ9UMR2 479 aa10.1□□□□□ -0.79
TMEM39A-202ENST00000438581 API5Q9BZZ5 524 aaKnown RBP10.1□□□□□ -0.79
TMEM39A-202ENST00000438581 AIMP1Q12904 312 aaKnown RBP10.09□□□□□ -0.79
TMEM39A-202ENST00000438581 HSCBQ8IWL3 235 aa10.09□□□□□ -0.79
TMEM39A-202ENST00000438581 TESK2Q96S53 571 aa10.09□□□□□ -0.79
TMEM39A-202ENST00000438581 GORABQ5T7V8 394 aa10.09□□□□□ -0.79
TMEM39A-202ENST00000438581 C9orf78Q9NZ63 289 aaPredicted RBP10.09□□□□□ -0.79
TMEM39A-202ENST00000438581 ERCC6L2Q5T890 1561 aa10.09□□□□□ -0.79
TMEM39A-202ENST00000438581 GOLGA6L22H0YM25 854 aa10.09□□□□□ -0.79
TMEM39A-202ENST00000438581 SLKQ9H2G2 1235 aaPredicted RBP10.09□□□□□ -0.79
TMEM39A-202ENST00000438581 UHRF1BP1LA0JNW5 1464 aa10.08□□□□□ -0.8
TMEM39A-202ENST00000438581 GTF2E1P29083 439 aaPredicted RBP10.08□□□□□ -0.8
TMEM39A-202ENST00000438581 KIAA1211Q6ZU35 1233 aa10.08□□□□□ -0.8
TMEM39A-202ENST00000438581 GAS2L2Q8NHY3 880 aa10.08□□□□□ -0.8
TMEM39A-202ENST00000438581 HDAC5Q9UQL6 1122 aa10.08□□□□□ -0.8
TMEM39A-202ENST00000438581 ABCA8O94911 1581 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms