RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ADGRB1O14514 1584 aa21.98■■□□□ 1.11
LIMS3-201ENST00000437679 SIN3AQ96ST3 1273 aa21.97■■□□□ 1.11
LIMS3-201ENST00000437679 PHF23Q9BUL5 403 aaPredicted RBP21.97■■□□□ 1.11
LIMS3-201ENST00000437679 POGKQ9P215 609 aa21.97■■□□□ 1.11
LIMS3-201ENST00000437679 DLC1Q96QB1 1528 aa21.96■■□□□ 1.11
LIMS3-201ENST00000437679 PRAM1Q96QH2 718 aa21.96■■□□□ 1.11
LIMS3-201ENST00000437679 NEUROD1Q13562 356 aa21.95■■□□□ 1.1
LIMS3-201ENST00000437679 TRAK1Q9UPV9 953 aa21.95■■□□□ 1.1
LIMS3-201ENST00000437679 NHSL1Q5SYE7 1610 aa21.95■■□□□ 1.1
LIMS3-201ENST00000437679 ORAI2Q96SN7 254 aa21.94■■□□□ 1.1
LIMS3-201ENST00000437679 SAFB2Q14151 953 aaKnown RBP eCLIP21.93■■□□□ 1.1
LIMS3-201ENST00000437679 ESCO1Q5FWF5 840 aa21.92■■□□□ 1.1
LIMS3-201ENST00000437679 L3MBTL2Q969R5 705 aa21.92■■□□□ 1.1
LIMS3-201ENST00000437679 NUTM2FA1L443 756 aa21.91■■□□□ 1.1
LIMS3-201ENST00000437679 DDX17Q92841 729 aaKnown RBP21.91■■□□□ 1.1
LIMS3-201ENST00000437679 KIAA1210Q9ULL0 1709 aa21.91■■□□□ 1.1
LIMS3-201ENST00000437679 LRRC59Q96AG4 307 aaKnown RBP21.9■■□□□ 1.1
LIMS3-201ENST00000437679 FMN2Q9NZ56 1722 aa21.89■■□□□ 1.1
LIMS3-201ENST00000437679 SHPRHQ149N8 1683 aa21.88■■□□□ 1.09
LIMS3-201ENST00000437679 SPATA31A6Q5VVP1 1343 aa21.88■■□□□ 1.09
LIMS3-201ENST00000437679 ILDR2Q71H61 639 aa21.88■■□□□ 1.09
LIMS3-201ENST00000437679 NPHP3Q7Z494 1330 aa21.85■■□□□ 1.09
LIMS3-201ENST00000437679 SOS2Q07890 1332 aaPredicted RBP21.84■■□□□ 1.09
LIMS3-201ENST00000437679 MINK1Q8N4C8 1332 aaPredicted RBP21.84■■□□□ 1.09
LIMS3-201ENST00000437679 NBPF1Q3BBV0 1214 aa21.84■■□□□ 1.09
LIMS3-201ENST00000437679 ARHGEF28Q8N1W1 1705 aaKnown RBP21.83■■□□□ 1.09
LIMS3-201ENST00000437679 ADGRB2O60241 1585 aa21.83■■□□□ 1.09
LIMS3-201ENST00000437679 HIRIP3Q9BW71 556 aaPredicted RBP21.83■■□□□ 1.09
LIMS3-201ENST00000437679 FOXO3O43524 673 aa21.82■■□□□ 1.08
LIMS3-201ENST00000437679 MEX3CQ5U5Q3 659 aaKnown RBP21.82■■□□□ 1.08
LIMS3-201ENST00000437679 RGPD8O14715 1765 aaPredicted RBP21.8■■□□□ 1.08
LIMS3-201ENST00000437679 KIF1AQ12756 1690 aa21.8■■□□□ 1.08
LIMS3-201ENST00000437679 EIF3AQ14152 1382 aaKnown RBP21.8■■□□□ 1.08
LIMS3-201ENST00000437679 PNPLA6Q8IY17 1366 aa21.8■■□□□ 1.08
LIMS3-201ENST00000437679 NUTM2BA6NNL0 878 aaPredicted RBP21.8■■□□□ 1.08
LIMS3-201ENST00000437679 NUTM2EB1AL46 878 aaPredicted RBP21.8■■□□□ 1.08
LIMS3-201ENST00000437679 NUTM2AQ8IVF1 878 aaPredicted RBP21.8■■□□□ 1.08
LIMS3-201ENST00000437679 PHF8Q9UPP1 1060 aa21.79■■□□□ 1.08
LIMS3-201ENST00000437679 LRP6O75581 1613 aa21.79■■□□□ 1.08
LIMS3-201ENST00000437679 ANKARQ7Z5J8 1434 aa21.79■■□□□ 1.08
LIMS3-201ENST00000437679 TONSLQ96HA7 1378 aa21.78■■□□□ 1.08
LIMS3-201ENST00000437679 WASLO00401 505 aaPredicted RBP21.78■■□□□ 1.08
LIMS3-201ENST00000437679 XPCQ01831 940 aaPredicted RBP21.77■■□□□ 1.08
LIMS3-201ENST00000437679 RGS17Q9UGC6 210 aaPredicted RBP21.77■■□□□ 1.08
LIMS3-201ENST00000437679 PXDNQ92626 1479 aa21.77■■□□□ 1.07
LIMS3-201ENST00000437679 PCGF6Q9BYE7 350 aa21.75■■□□□ 1.07
LIMS3-201ENST00000437679 TRPM1Q7Z4N2 1603 aa21.75■■□□□ 1.07
LIMS3-201ENST00000437679 TULP4Q9NRJ4 1543 aa21.74■■□□□ 1.07
LIMS3-201ENST00000437679 ROCK2O75116 1388 aaKnown RBP21.74■■□□□ 1.07
LIMS3-201ENST00000437679 USP32Q8NFA0 1604 aa21.73■■□□□ 1.07
LIMS3-201ENST00000437679 KRT28Q7Z3Y7 464 aa21.73■■□□□ 1.07
LIMS3-201ENST00000437679 PSME1Q06323 249 aa21.72■■□□□ 1.07
LIMS3-201ENST00000437679 CENPJQ9HC77 1338 aaPredicted RBP21.72■■□□□ 1.07
LIMS3-201ENST00000437679 PMFBP1Q8TBY8 1022 aa21.71■■□□□ 1.07
LIMS3-201ENST00000437679 NBPF8Q3BBV2 869 aa21.7■■□□□ 1.06
LIMS3-201ENST00000437679 CDK19Q9BWU1 502 aa21.7■■□□□ 1.06
LIMS3-201ENST00000437679 PRR36Q9H6K5 1346 aa21.7■■□□□ 1.06
LIMS3-201ENST00000437679 SOCS7O14512 581 aa21.69■■□□□ 1.06
LIMS3-201ENST00000437679 ZNF772Q68DY9 489 aaPredicted RBP21.69■■□□□ 1.06
LIMS3-201ENST00000437679 POTEAQ6S8J7 498 aa21.69■■□□□ 1.06
LIMS3-201ENST00000437679 COL22A1Q8NFW1 1626 aaPredicted RBP21.69■■□□□ 1.06
LIMS3-201ENST00000437679 NUDT16Q96DE0 195 aaKnown RBP21.68■■□□□ 1.06
LIMS3-201ENST00000437679 SPATA31A3Q5VYP0 1347 aa21.68■■□□□ 1.06
LIMS3-201ENST00000437679 ADAMTS2O95450 1211 aa21.67■■□□□ 1.06
LIMS3-201ENST00000437679 ITSN1Q15811 1721 aa21.66■■□□□ 1.06
LIMS3-201ENST00000437679 NGDNQ8NEJ9 315 aaKnown RBP21.66■■□□□ 1.06
LIMS3-201ENST00000437679 C8orf37Q96NL8 207 aa21.66■■□□□ 1.06
LIMS3-201ENST00000437679 QRICH2Q9H0J4 1663 aa21.66■■□□□ 1.06
LIMS3-201ENST00000437679 ATP7BP35670 1465 aa21.65■■□□□ 1.06
LIMS3-201ENST00000437679 SBNO1A3KN83 1393 aa21.65■■□□□ 1.06
LIMS3-201ENST00000437679 GPRASP1Q5JY77 1395 aa21.65■■□□□ 1.06
LIMS3-201ENST00000437679 TNS3Q68CZ2 1445 aa21.64■■□□□ 1.06
LIMS3-201ENST00000437679 AFF2P51816 1311 aa21.64■■□□□ 1.05
LIMS3-201ENST00000437679 SRPK2P78362 688 aaKnown RBP21.63■■□□□ 1.05
LIMS3-201ENST00000437679 NGLY1Q96IV0 654 aa21.63■■□□□ 1.05
LIMS3-201ENST00000437679 LMOD2Q6P5Q4 547 aa21.62■■□□□ 1.05
LIMS3-201ENST00000437679 CARD11Q9BXL7 1154 aa21.62■■□□□ 1.05
LIMS3-201ENST00000437679 CCDC61Q9Y6R9 512 aa21.62■■□□□ 1.05
LIMS3-201ENST00000437679 RALGAPBQ86X10 1494 aa21.61■■□□□ 1.05
LIMS3-201ENST00000437679 ARHGEF10O15013 1369 aa21.61■■□□□ 1.05
LIMS3-201ENST00000437679 CLSPNQ9HAW4 1339 aa21.6■■□□□ 1.05
LIMS3-201ENST00000437679 CABP2Q9NPB3 220 aa21.59■■□□□ 1.05
LIMS3-201ENST00000437679 EVC2Q86UK5 1308 aa21.58■■□□□ 1.05
LIMS3-201ENST00000437679 HAP1P54257 671 aaPredicted RBP21.58■■□□□ 1.05
LIMS3-201ENST00000437679 TOPAZ1Q8N9V7 1692 aa21.58■■□□□ 1.05
LIMS3-201ENST00000437679 TRPM3Q9HCF6 1732 aaPredicted RBP21.58■■□□□ 1.04
LIMS3-201ENST00000437679 PLEKHG3A1L390 1219 aa21.56■■□□□ 1.04
LIMS3-201ENST00000437679 PAK3O75914 559 aaPredicted RBP21.56■■□□□ 1.04
LIMS3-201ENST00000437679 ACEP12821 1306 aa21.55■■□□□ 1.04
LIMS3-201ENST00000437679 MARF1Q9Y4F3 1742 aaKnown RBP21.55■■□□□ 1.04
LIMS3-201ENST00000437679 PLEKHG5O94827 1062 aa21.55■■□□□ 1.04
LIMS3-201ENST00000437679 POLR3AO14802 1390 aaPredicted RBP21.55■■□□□ 1.04
LIMS3-201ENST00000437679 PPIP5K1Q6PFW1 1433 aa21.55■■□□□ 1.04
LIMS3-201ENST00000437679 RXRBP28702 533 aa21.54■■□□□ 1.04
LIMS3-201ENST00000437679 CABLES1Q8TDN4 633 aa21.54■■□□□ 1.04
LIMS3-201ENST00000437679 USP21Q9UK80 565 aa21.54■■□□□ 1.04
LIMS3-201ENST00000437679 FNBP4Q8N3X1 1017 aaPredicted RBP21.53■■□□□ 1.04
LIMS3-201ENST00000437679 QTRT2Q9H974 415 aaKnown RBP21.53■■□□□ 1.04
LIMS3-201ENST00000437679 TIMELESSQ9UNS1 1208 aa21.53■■□□□ 1.04
LIMS3-201ENST00000437679 ALS2Q96Q42 1657 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms