RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 DEKP35659 375 aaKnown RBP10.98□□□□□ -0.65
CD44-208ENST00000428726 PDE3BQ13370 1112 aa10.98□□□□□ -0.65
CD44-208ENST00000428726 TXNDC2Q86VQ3 553 aa10.98□□□□□ -0.65
CD44-208ENST00000428726 NPATQ14207 1427 aa10.98□□□□□ -0.65
CD44-208ENST00000428726 SYNMO15061 1565 aa10.98□□□□□ -0.65
CD44-208ENST00000428726 GOLGA2Q08379 1002 aa10.98□□□□□ -0.65
CD44-208ENST00000428726 COG6Q9Y2V7 657 aa10.98□□□□□ -0.65
CD44-208ENST00000428726 RTN4Q9NQC3 1192 aaKnown RBP10.97□□□□□ -0.65
CD44-208ENST00000428726 CABP1Q9NZU7 370 aa10.97□□□□□ -0.65
CD44-208ENST00000428726 HECW2Q9P2P5 1572 aa10.97□□□□□ -0.65
CD44-208ENST00000428726 HMOX1P09601 288 aa10.97□□□□□ -0.65
CD44-208ENST00000428726 THUMPD2Q9BTF0 503 aaKnown RBP10.97□□□□□ -0.65
CD44-208ENST00000428726 ESF1Q9H501 851 aaKnown RBP10.97□□□□□ -0.65
CD44-208ENST00000428726 NSD3Q9BZ95 1437 aa10.97□□□□□ -0.65
CD44-208ENST00000428726 IFT172Q9UG01 1749 aa10.96□□□□□ -0.65
CD44-208ENST00000428726 TRHP20396 242 aaPredicted RBP10.96□□□□□ -0.66
CD44-208ENST00000428726 DUSP27Q5VZP5 1158 aa10.96□□□□□ -0.66
CD44-208ENST00000428726 ABCA6Q8N139 1617 aa10.96□□□□□ -0.66
CD44-208ENST00000428726 TCP11L2Q8N4U5 519 aa10.95□□□□□ -0.66
CD44-208ENST00000428726 SLC26A8Q96RN1 970 aa10.95□□□□□ -0.66
CD44-208ENST00000428726 BLMP54132 1417 aaPredicted RBP10.95□□□□□ -0.66
CD44-208ENST00000428726 FRMPD1Q5SYB0 1578 aa10.95□□□□□ -0.66
CD44-208ENST00000428726 NEO1Q92859 1461 aa10.94□□□□□ -0.66
CD44-208ENST00000428726 NRXN1Q9ULB1 1477 aa10.94□□□□□ -0.66
CD44-208ENST00000428726 KDM5AP29375 1690 aaKnown RBP10.94□□□□□ -0.66
CD44-208ENST00000428726 C14orf93Q9H972 538 aaKnown RBP10.94□□□□□ -0.66
CD44-208ENST00000428726 MROH2AA6NES4 1674 aa10.94□□□□□ -0.66
CD44-208ENST00000428726 FANCIQ9NVI1 1328 aa10.94□□□□□ -0.66
CD44-208ENST00000428726 NOP58Q9Y2X3 529 aaKnown RBP10.94□□□□□ -0.66
CD44-208ENST00000428726 ADGRB3O60242 1522 aa10.93□□□□□ -0.66
CD44-208ENST00000428726 NPC1L1Q9UHC9 1359 aa10.93□□□□□ -0.66
CD44-208ENST00000428726 TSPOAP1O95153 1857 aa10.93□□□□□ -0.66
CD44-208ENST00000428726 ASXL1Q8IXJ9 1541 aa10.93□□□□□ -0.66
CD44-208ENST00000428726 VGFO15240 615 aaPredicted RBP10.93□□□□□ -0.66
CD44-208ENST00000428726 NUTM2GQ5VZR2 741 aa10.93□□□□□ -0.66
CD44-208ENST00000428726 MYOM1P52179 1685 aa10.92□□□□□ -0.66
CD44-208ENST00000428726 ZBTB7CA1YPR0 619 aa10.92□□□□□ -0.66
CD44-208ENST00000428726 RRS1Q15050 365 aaKnown RBP10.92□□□□□ -0.66
CD44-208ENST00000428726 CDK19Q9BWU1 502 aa10.92□□□□□ -0.66
CD44-208ENST00000428726 SETBP1Q9Y6X0 1596 aa10.92□□□□□ -0.66
CD44-208ENST00000428726 SBNO2Q9Y2G9 1366 aa10.91□□□□□ -0.66
CD44-208ENST00000428726 ERVK-7P63135 1459 aa10.91□□□□□ -0.66
CD44-208ENST00000428726 MYO3AQ8NEV4 1616 aa10.91□□□□□ -0.66
CD44-208ENST00000428726 ABCC3O15438 1527 aa10.91□□□□□ -0.66
CD44-208ENST00000428726 RPGRIP1LQ68CZ1 1315 aa10.91□□□□□ -0.66
CD44-208ENST00000428726 PDE4AP27815 886 aa10.9□□□□□ -0.66
CD44-208ENST00000428726 WWC1Q8IX03 1113 aa10.9□□□□□ -0.66
CD44-208ENST00000428726 PIK3C2GO75747 1445 aa10.9□□□□□ -0.66
CD44-208ENST00000428726 PPLO60437 1756 aa10.9□□□□□ -0.67
CD44-208ENST00000428726 SLFN5Q08AF3 891 aa10.9□□□□□ -0.67
CD44-208ENST00000428726 ANP32AP39687 249 aaKnown RBP10.89□□□□□ -0.67
CD44-208ENST00000428726 DCTN1Q14203 1278 aa10.89□□□□□ -0.67
CD44-208ENST00000428726 PMFBP1Q8TBY8 1022 aa10.89□□□□□ -0.67
CD44-208ENST00000428726 ZNF428Q96B54 188 aa10.89□□□□□ -0.67
CD44-208ENST00000428726 CAMSAP1Q5T5Y3 1602 aa10.88□□□□□ -0.67
CD44-208ENST00000428726 IGHDP01880 384 aa10.88□□□□□ -0.67
CD44-208ENST00000428726 NME9Q86XW9 330 aa10.88□□□□□ -0.67
CD44-208ENST00000428726 EMILIN1Q9Y6C2 1016 aa10.88□□□□□ -0.67
CD44-208ENST00000428726 EVC2Q86UK5 1308 aa10.88□□□□□ -0.67
CD44-208ENST00000428726 RLBP1P12271 317 aa10.88□□□□□ -0.67
CD44-208ENST00000428726 ZBTB47Q9UFB7 747 aaPredicted RBP10.88□□□□□ -0.67
CD44-208ENST00000428726 DIP2CQ9Y2E4 1556 aa10.87□□□□□ -0.67
CD44-208ENST00000428726 SPRYD3Q8NCJ5 442 aa10.87□□□□□ -0.67
CD44-208ENST00000428726 FYB1O15117 783 aa10.87□□□□□ -0.67
CD44-208ENST00000428726 C14orf37Q86TY3 774 aa10.87□□□□□ -0.67
CD44-208ENST00000428726 CGNL1Q0VF96 1302 aa10.86□□□□□ -0.67
CD44-208ENST00000428726 RICTORQ6R327 1708 aa10.86□□□□□ -0.67
CD44-208ENST00000428726 ZC3H13Q5T200 1668 aaKnown RBP10.85□□□□□ -0.67
CD44-208ENST00000428726 ARHGAP31Q2M1Z3 1444 aa10.85□□□□□ -0.67
CD44-208ENST00000428726 FAM83GA6ND36 823 aa10.85□□□□□ -0.67
CD44-208ENST00000428726 PIK3C2BO00750 1634 aa10.85□□□□□ -0.67
CD44-208ENST00000428726 ADGRB1O14514 1584 aa10.85□□□□□ -0.67
CD44-208ENST00000428726 RTL5Q5HYW3 569 aaPredicted RBP10.84□□□□□ -0.67
CD44-208ENST00000428726 SIGLEC1Q9BZZ2 1709 aa10.84□□□□□ -0.67
CD44-208ENST00000428726 EXOSC9Q06265 439 aaKnown RBP10.84□□□□□ -0.67
CD44-208ENST00000428726 RIPK4P57078 832 aa10.84□□□□□ -0.67
CD44-208ENST00000428726 CFAP53Q96M91 514 aa10.84□□□□□ -0.67
CD44-208ENST00000428726 A0A1W2PP64 1363 aa10.83□□□□□ -0.68
CD44-208ENST00000428726 GLI2P10070 1586 aa10.83□□□□□ -0.68
CD44-208ENST00000428726 PHACTR3Q96KR7 559 aa10.83□□□□□ -0.68
CD44-208ENST00000428726 C1orf115Q9H7X2 142 aa10.83□□□□□ -0.68
CD44-208ENST00000428726 QRICH2Q9H0J4 1663 aa10.83□□□□□ -0.68
CD44-208ENST00000428726 LTV1Q96GA3 475 aaPredicted RBP10.83□□□□□ -0.68
CD44-208ENST00000428726 MIS18AQ9NYP9 233 aa10.83□□□□□ -0.68
CD44-208ENST00000428726 KRT24Q2M2I5 525 aa10.82□□□□□ -0.68
CD44-208ENST00000428726 APBB1O00213 710 aa10.82□□□□□ -0.68
CD44-208ENST00000428726 PRKAR2BP31323 418 aa10.82□□□□□ -0.68
CD44-208ENST00000428726 RUNDC1Q96C34 613 aa10.82□□□□□ -0.68
CD44-208ENST00000428726 ARXQ96QS3 562 aa10.82□□□□□ -0.68
CD44-208ENST00000428726 SLC52A1Q9NWF4 448 aa10.82□□□□□ -0.68
CD44-208ENST00000428726 NEXMIFQ5QGS0 1516 aa10.81□□□□□ -0.68
CD44-208ENST00000428726 MAPK8IP3Q9UPT6 1336 aa10.81□□□□□ -0.68
CD44-208ENST00000428726 IL27Q8NEV9 243 aa10.81□□□□□ -0.68
CD44-208ENST00000428726 NECTIN2Q92692 538 aa10.81□□□□□ -0.68
CD44-208ENST00000428726 IPO9Q96P70 1041 aaKnown RBP10.81□□□□□ -0.68
CD44-208ENST00000428726 PUS7Q96PZ0 661 aaKnown RBP10.81□□□□□ -0.68
CD44-208ENST00000428726 SMC4Q9NTJ3 1288 aa10.81□□□□□ -0.68
CD44-208ENST00000428726 ZNF521Q96K83 1311 aa10.81□□□□□ -0.68
CD44-208ENST00000428726 SEC24BO95487 1268 aa10.81□□□□□ -0.68
CD44-208ENST00000428726 E9PSI1 815 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms