RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 NLRP1Q9C000 1473 aa12.54□□□□□ -0.4
USP54-205ENST00000424265 ATAD2Q6PL18 1390 aa12.54□□□□□ -0.4
USP54-205ENST00000424265 CCDC7Q96M83 1385 aa12.54□□□□□ -0.4
USP54-205ENST00000424265 PTPRTO14522 1441 aa12.54□□□□□ -0.4
USP54-205ENST00000424265 EFCAB6Q5THR3 1501 aa12.53□□□□□ -0.4
USP54-205ENST00000424265 MINK1Q8N4C8 1332 aaPredicted RBP12.53□□□□□ -0.4
USP54-205ENST00000424265 CEBPAP49715 358 aaPredicted RBP12.53□□□□□ -0.4
USP54-205ENST00000424265 ATF3P18847 181 aa12.52□□□□□ -0.41
USP54-205ENST00000424265 DNTTIP2Q5QJE6 756 aaKnown RBP12.52□□□□□ -0.41
USP54-205ENST00000424265 PRAG1Q86YV5 1406 aa12.52□□□□□ -0.41
USP54-205ENST00000424265 FAM9BQ8IZU0 186 aa12.51□□□□□ -0.41
USP54-205ENST00000424265 ZC3H13Q5T200 1668 aaKnown RBP12.51□□□□□ -0.41
USP54-205ENST00000424265 TMEM132EQ6IEE7 984 aa12.51□□□□□ -0.41
USP54-205ENST00000424265 PLCD3Q8N3E9 789 aa12.5□□□□□ -0.41
USP54-205ENST00000424265 ERVK-7P63135 1459 aa12.5□□□□□ -0.41
USP54-205ENST00000424265 PROSER2Q86WR7 435 aaPredicted RBP12.5□□□□□ -0.41
USP54-205ENST00000424265 NFKBIBQ15653 356 aa12.5□□□□□ -0.41
USP54-205ENST00000424265 NBPF1Q3BBV0 1214 aa12.5□□□□□ -0.41
USP54-205ENST00000424265 CC2D1BQ5T0F9 858 aaKnown RBP12.5□□□□□ -0.41
USP54-205ENST00000424265 FTSJ3Q8IY81 847 aaKnown RBP12.5□□□□□ -0.41
USP54-205ENST00000424265 MAP7D2Q96T17 732 aa12.5□□□□□ -0.41
USP54-205ENST00000424265 ADGRF5Q8IZF2 1346 aa12.49□□□□□ -0.41
USP54-205ENST00000424265 PRAM1Q96QH2 718 aa12.49□□□□□ -0.41
USP54-205ENST00000424265 NINLQ9Y2I6 1382 aa12.49□□□□□ -0.41
USP54-205ENST00000424265 LMOD2Q6P5Q4 547 aa12.49□□□□□ -0.41
USP54-205ENST00000424265 ARID3AQ99856 593 aa12.48□□□□□ -0.41
USP54-205ENST00000424265 KIF7Q2M1P5 1343 aa12.48□□□□□ -0.41
USP54-205ENST00000424265 ZNF692Q9BU19 519 aaPredicted RBP12.48□□□□□ -0.41
USP54-205ENST00000424265 KIDINS220Q9ULH0 1771 aa12.48□□□□□ -0.41
USP54-205ENST00000424265 NLRP13Q86W25 1043 aa12.48□□□□□ -0.41
USP54-205ENST00000424265 PUS7Q96PZ0 661 aaKnown RBP12.48□□□□□ -0.41
USP54-205ENST00000424265 REREQ9P2R6 1566 aa12.48□□□□□ -0.41
USP54-205ENST00000424265 MAPK8IP3Q9UPT6 1336 aa12.48□□□□□ -0.41
USP54-205ENST00000424265 PANK3Q9H999 370 aa12.47□□□□□ -0.41
USP54-205ENST00000424265 ZHX1Q9UKY1 873 aaPredicted RBP12.47□□□□□ -0.41
USP54-205ENST00000424265 ABCA6Q8N139 1617 aa12.47□□□□□ -0.41
USP54-205ENST00000424265 APPP05067 770 aa12.47□□□□□ -0.41
USP54-205ENST00000424265 RNF17Q9BXT8 1623 aaKnown RBP12.46□□□□□ -0.41
USP54-205ENST00000424265 TBX22Q9Y458 520 aa12.46□□□□□ -0.41
USP54-205ENST00000424265 MYOM2P54296 1465 aa12.46□□□□□ -0.42
USP54-205ENST00000424265 GPRASP1Q5JY77 1395 aa12.46□□□□□ -0.42
USP54-205ENST00000424265 COG3Q96JB2 828 aa12.45□□□□□ -0.42
USP54-205ENST00000424265 TMEM2Q9UHN6 1383 aa12.45□□□□□ -0.42
USP54-205ENST00000424265 SLC26A8Q96RN1 970 aa12.45□□□□□ -0.42
USP54-205ENST00000424265 MYBBP1AQ9BQG0 1328 aaKnown RBP12.45□□□□□ -0.42
USP54-205ENST00000424265 PSME1Q06323 249 aa12.44□□□□□ -0.42
USP54-205ENST00000424265 PTMSP20962 102 aa12.44□□□□□ -0.42
USP54-205ENST00000424265 ZFP91Q96JP5 570 aaPredicted RBP12.43□□□□□ -0.42
USP54-205ENST00000424265 KIF1BO60333 1816 aa12.43□□□□□ -0.42
USP54-205ENST00000424265 ZBTB7CA1YPR0 619 aa12.43□□□□□ -0.42
USP54-205ENST00000424265 AMOTL2Q9Y2J4 779 aa12.42□□□□□ -0.42
USP54-205ENST00000424265 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.42□□□□□ -0.42
USP54-205ENST00000424265 CDK19Q9BWU1 502 aa12.42□□□□□ -0.42
USP54-205ENST00000424265 ZFYVE9O95405 1425 aa12.42□□□□□ -0.42
USP54-205ENST00000424265 SPATA31E1Q6ZUB1 1445 aa12.42□□□□□ -0.42
USP54-205ENST00000424265 LRPPRCP42704 1394 aaKnown RBP12.41□□□□□ -0.42
USP54-205ENST00000424265 SIRT1Q96EB6 747 aa12.41□□□□□ -0.42
USP54-205ENST00000424265 RRAGDQ9NQL2 400 aaPredicted RBP12.41□□□□□ -0.42
USP54-205ENST00000424265 CAMSAP1Q5T5Y3 1602 aa12.41□□□□□ -0.42
USP54-205ENST00000424265 FAM13BQ9NYF5 915 aa12.41□□□□□ -0.42
USP54-205ENST00000424265 RICTORQ6R327 1708 aa12.41□□□□□ -0.42
USP54-205ENST00000424265 SPHKAPQ2M3C7 1700 aa12.4□□□□□ -0.42
USP54-205ENST00000424265 UGGT1Q9NYU2 1555 aa12.4□□□□□ -0.42
USP54-205ENST00000424265 NGEFQ8N5V2 710 aa12.4□□□□□ -0.42
USP54-205ENST00000424265 GOLGA6L3A6NEY3 463 aa12.4□□□□□ -0.42
USP54-205ENST00000424265 GTF2E1P29083 439 aaPredicted RBP12.4□□□□□ -0.42
USP54-205ENST00000424265 CCDC61Q9Y6R9 512 aa12.4□□□□□ -0.42
USP54-205ENST00000424265 CABP2Q9NPB3 220 aa12.4□□□□□ -0.43
USP54-205ENST00000424265 PLEKHG1Q9ULL1 1385 aa12.4□□□□□ -0.43
USP54-205ENST00000424265 IRX3P78415 501 aaPredicted RBP12.39□□□□□ -0.43
USP54-205ENST00000424265 A2ML1A8K2U0 1454 aa12.39□□□□□ -0.43
USP54-205ENST00000424265 CLCN1P35523 988 aa12.38□□□□□ -0.43
USP54-205ENST00000424265 SMAP1Q8IYB5 467 aaPredicted RBP12.38□□□□□ -0.43
USP54-205ENST00000424265 HSP90B1P14625 803 aaKnown RBP12.38□□□□□ -0.43
USP54-205ENST00000424265 MTERF4Q7Z6M4 381 aaKnown RBP12.38□□□□□ -0.43
USP54-205ENST00000424265 PRKRIP1Q9H875 184 aaPredicted RBP12.38□□□□□ -0.43
USP54-205ENST00000424265 U2SURPO15042 1029 aaKnown RBP12.38□□□□□ -0.43
USP54-205ENST00000424265 WASLO00401 505 aaPredicted RBP12.37□□□□□ -0.43
USP54-205ENST00000424265 DEPDC5O75140 1603 aa12.37□□□□□ -0.43
USP54-205ENST00000424265 YTHDC2Q9H6S0 1430 aaKnown RBP12.37□□□□□ -0.43
USP54-205ENST00000424265 PIK3R4Q99570 1358 aa12.37□□□□□ -0.43
USP54-205ENST00000424265 BCCIPQ9P287 314 aaKnown RBP eCLIP12.37□□□□□ -0.43
USP54-205ENST00000424265 VGLL3A8MV65 326 aa12.37□□□□□ -0.43
USP54-205ENST00000424265 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.36□□□□□ -0.43
USP54-205ENST00000424265 NSD2O96028 1365 aa12.36□□□□□ -0.43
USP54-205ENST00000424265 TCERG1O14776 1098 aaKnown RBP12.36□□□□□ -0.43
USP54-205ENST00000424265 AMPHP49418 695 aa12.36□□□□□ -0.43
USP54-205ENST00000424265 ADGRB3O60242 1522 aa12.36□□□□□ -0.43
USP54-205ENST00000424265 VWDEQ8N2E2 1590 aa12.36□□□□□ -0.43
USP54-205ENST00000424265 CEP152O94986 1710 aa12.35□□□□□ -0.43
USP54-205ENST00000424265 CADPS2Q86UW7 1296 aa12.35□□□□□ -0.43
USP54-205ENST00000424265 TEX2Q8IWB9 1127 aa12.35□□□□□ -0.43
USP54-205ENST00000424265 NUTM2FA1L443 756 aa12.35□□□□□ -0.43
USP54-205ENST00000424265 PLA2R1Q13018 1463 aa12.35□□□□□ -0.43
USP54-205ENST00000424265 TAF3Q5VWG9 929 aa12.35□□□□□ -0.43
USP54-205ENST00000424265 NUDT16Q96DE0 195 aaKnown RBP12.35□□□□□ -0.43
USP54-205ENST00000424265 ABCC11Q96J66 1382 aa12.35□□□□□ -0.43
USP54-205ENST00000424265 LMOD3Q0VAK6 560 aa12.35□□□□□ -0.43
USP54-205ENST00000424265 PRDM10Q9NQV6 1147 aa12.35□□□□□ -0.43
USP54-205ENST00000424265 PATL2C9JE40 543 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms