RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 NOL7Q9UMY1 257 aaKnown RBP4.13□□□□□ -1.75
SYNE1-212ENST00000423061 DHX8Q14562 1220 aaKnown RBP4.13□□□□□ -1.75
SYNE1-212ENST00000423061 CDCA8Q53HL2 280 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 LRRFIP2Q9Y608 721 aaKnown RBP4.13□□□□□ -1.75
SYNE1-212ENST00000423061 ICE2Q659A1 982 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 ANKRD20A12PQ8NF67 263 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 TTC12Q9H892 705 aaPredicted RBP4.13□□□□□ -1.75
SYNE1-212ENST00000423061 SUFUQ9UMX1 484 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 EIF3AQ14152 1382 aaKnown RBP4.13□□□□□ -1.75
SYNE1-212ENST00000423061 TNPO1Q92973 898 aaKnown RBP4.13□□□□□ -1.75
SYNE1-212ENST00000423061 BIN2Q9UBW5 565 aaPredicted RBP4.13□□□□□ -1.75
SYNE1-212ENST00000423061 NEBLO76041 1014 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 GIMAP7Q8NHV1 300 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 CCDC172P0C7W6 258 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 LMAN1P49257 510 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 SLC24A3Q9HC58 644 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.13□□□□□ -1.75
SYNE1-212ENST00000423061 V9GYY5 206 aaPredicted RBP4.13□□□□□ -1.75
SYNE1-212ENST00000423061 NRDCO43847 1150 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 KRBA2Q6ZNG9 492 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 IRAK4Q9NWZ3 460 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 CLSTN1O94985 981 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 CHIC2Q9UKJ5 165 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 CHMP3Q9Y3E7 222 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 GTF3C6Q969F1 213 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 C22orf23Q9BZE7 217 aa4.13□□□□□ -1.75
SYNE1-212ENST00000423061 TPM1P09493 284 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 RDXP35241 583 aaKnown RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 ANAPC15P60006 121 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 NCAPGQ9BPX3 1015 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 GEMIN8Q9NWZ8 242 aaKnown RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 CCDC112Q8NEF3 446 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 RRP7BPQ9NSQ0 103 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 SSR1P43307 286 aaKnown RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 MNS1Q8NEH6 495 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 JRKLQ9Y4A0 524 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 RIOK3O14730 519 aaKnown RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 NOL8Q76FK4 1167 aaKnown RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 FEZ1Q99689 392 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 PRIMPOLQ96LW4 560 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 CNTLNQ9NXG0 1405 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 GABPB1Q06547 395 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 ZNF500O60304 480 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 GNL2Q13823 731 aaKnown RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 PANK1Q8TE04 598 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 RWDD1Q9H446 243 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 SEMA3FQ13275 785 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 ZSCAN23Q3MJ62 389 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 PRKRIP1Q9H875 184 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 DHX57Q6P158 1386 aaKnown RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 CFAP53Q96M91 514 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 CAPN2P17655 700 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 MAP2K2P36507 400 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 SATB1Q01826 763 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 NEK11Q8NG66 645 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 ZNF853P0CG23 659 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 ZRSR1Q15695 479 aaKnown RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 KANK4Q5T7N3 995 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-212ENST00000423061 MCCP23508 829 aa4.12□□□□□ -1.75
SYNE1-212ENST00000423061 TTC19Q6DKK2 380 aaPredicted RBP4.11□□□□□ -1.75
SYNE1-212ENST00000423061 RNF217Q8TC41 542 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 CHRM1P11229 460 aaPredicted RBP4.11□□□□□ -1.75
SYNE1-212ENST00000423061 ISY1Q9ULR0 285 aaKnown RBP4.11□□□□□ -1.75
SYNE1-212ENST00000423061 RAPGEF2Q9Y4G8 1499 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 CENPHQ9H3R5 247 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 ST7Q9NRC1 585 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 ZKSCAN5Q9Y2L8 839 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 TPM3P06753 285 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 NAP1L1P55209 391 aaKnown RBP4.11□□□□□ -1.75
SYNE1-212ENST00000423061 ZNF710Q8N1W2 664 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 BCL2L12Q9HB09 334 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 HTATSF1O43719 755 aaKnown RBP4.11□□□□□ -1.75
SYNE1-212ENST00000423061 ARMCX6Q7L4S7 300 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 PRIM1P49642 420 aaKnown RBP4.11□□□□□ -1.75
SYNE1-212ENST00000423061 SYCE3A1L190 88 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 ATP6V1AP38606 617 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 HS1BP3Q53T59 392 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 PSEN1P49768 467 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 CTR9Q6PD62 1173 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 SYT10Q6XYQ8 523 aa4.11□□□□□ -1.75
SYNE1-212ENST00000423061 ECM2O94769 699 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-212ENST00000423061 NPM1P06748 294 aaKnown RBP eCLIP4.1□□□□□ -1.75
SYNE1-212ENST00000423061 CLNS1AP54105 237 aaKnown RBP4.1□□□□□ -1.75
SYNE1-212ENST00000423061 FBXW7Q969H0 707 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 FRMD3A2A2Y4 597 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 KDM2AQ9Y2K7 1162 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 MRVI1Q9Y6F6 885 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 KIF15Q9NS87 1388 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 DNAAF4Q8WXU2 420 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 HOMER1Q86YM7 354 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 KNSTRNQ9Y448 316 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 GRIPAP1Q4V328 841 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 VGFO15240 615 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-212ENST00000423061 ADCY5O95622 1261 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 DHX16O60231 1041 aaKnown RBP4.1□□□□□ -1.75
SYNE1-212ENST00000423061 TXLNBQ8N3L3 684 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 COG6Q9Y2V7 657 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 CLUAP1Q96AJ1 413 aa4.1□□□□□ -1.75
SYNE1-212ENST00000423061 MAP2K1Q02750 393 aaPredicted RBP4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms