RNA–Protein interactions for RNA: ENST00000420503.1

LINC00339-203, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 771 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-203ENST00000420503 PLEKHH1Q9ULM0 1364 aa19.47■□□□□ 0.71
LINC00339-203ENST00000420503 PXDNQ92626 1479 aa19.47■□□□□ 0.71
LINC00339-203ENST00000420503 COL22A1Q8NFW1 1626 aaPredicted RBP19.47■□□□□ 0.71
LINC00339-203ENST00000420503 CDC42BPGQ6DT37 1551 aa19.46■□□□□ 0.71
LINC00339-203ENST00000420503 WAPLQ7Z5K2 1190 aa19.46■□□□□ 0.71
LINC00339-203ENST00000420503 STK26Q9P289 416 aa19.46■□□□□ 0.71
LINC00339-203ENST00000420503 USP21Q9UK80 565 aa19.46■□□□□ 0.71
LINC00339-203ENST00000420503 MYOM2P54296 1465 aa19.46■□□□□ 0.71
LINC00339-203ENST00000420503 ESCO1Q5FWF5 840 aa19.45■□□□□ 0.7
LINC00339-203ENST00000420503 RPGRIP1LQ68CZ1 1315 aa19.45■□□□□ 0.7
LINC00339-203ENST00000420503 RGL3Q3MIN7 710 aa19.44■□□□□ 0.7
LINC00339-203ENST00000420503 ATRNO75882 1429 aa19.43■□□□□ 0.7
LINC00339-203ENST00000420503 TMEM132EQ6IEE7 984 aa19.43■□□□□ 0.7
LINC00339-203ENST00000420503 IFT172Q9UG01 1749 aa19.42■□□□□ 0.7
LINC00339-203ENST00000420503 FOXO3O43524 673 aa19.42■□□□□ 0.7
LINC00339-203ENST00000420503 FNBP4Q8N3X1 1017 aaPredicted RBP19.42■□□□□ 0.7
LINC00339-203ENST00000420503 SRCAPQ6ZRS2 3230 aa19.42■□□□□ 0.7
LINC00339-203ENST00000420503 SPATA31E1Q6ZUB1 1445 aa19.42■□□□□ 0.7
LINC00339-203ENST00000420503 BCL9LQ86UU0 1499 aa19.41■□□□□ 0.7
LINC00339-203ENST00000420503 TRPC5Q9UL62 973 aaPredicted RBP19.4■□□□□ 0.7
LINC00339-203ENST00000420503 MARF1Q9Y4F3 1742 aaKnown RBP19.39■□□□□ 0.7
LINC00339-203ENST00000420503 EP400Q96L91 3159 aa19.39■□□□□ 0.69
LINC00339-203ENST00000420503 TECPR2O15040 1411 aa19.38■□□□□ 0.69
LINC00339-203ENST00000420503 NPHP3Q7Z494 1330 aa19.38■□□□□ 0.69
LINC00339-203ENST00000420503 CCDC144AA2RUR9 1427 aa19.37■□□□□ 0.69
LINC00339-203ENST00000420503 LRPPRCP42704 1394 aaKnown RBP19.37■□□□□ 0.69
LINC00339-203ENST00000420503 ATAD2Q6PL18 1390 aa19.37■□□□□ 0.69
LINC00339-203ENST00000420503 KNDC1Q76NI1 1749 aa19.37■□□□□ 0.69
LINC00339-203ENST00000420503 FMN2Q9NZ56 1722 aa19.37■□□□□ 0.69
LINC00339-203ENST00000420503 PIK3C2GO75747 1445 aa19.35■□□□□ 0.69
LINC00339-203ENST00000420503 RGPD8O14715 1765 aaPredicted RBP19.35■□□□□ 0.69
LINC00339-203ENST00000420503 PLEKHG5O94827 1062 aa19.34■□□□□ 0.69
LINC00339-203ENST00000420503 MPHOSPH9Q99550 1183 aa19.34■□□□□ 0.69
LINC00339-203ENST00000420503 GLI3P10071 1580 aa19.33■□□□□ 0.69
LINC00339-203ENST00000420503 ABCC11Q96J66 1382 aa19.32■□□□□ 0.68
LINC00339-203ENST00000420503 YTHDC2Q9H6S0 1430 aaKnown RBP19.32■□□□□ 0.68
LINC00339-203ENST00000420503 SPATA31A3Q5VYP0 1347 aa19.3■□□□□ 0.68
LINC00339-203ENST00000420503 CABLES1Q8TDN4 633 aa19.3■□□□□ 0.68
LINC00339-203ENST00000420503 GJD4Q96KN9 370 aaPredicted RBP19.3■□□□□ 0.68
LINC00339-203ENST00000420503 ANKRD30BQ9BXX2 1392 aa19.3■□□□□ 0.68
LINC00339-203ENST00000420503 RALGAPBQ86X10 1494 aa19.29■□□□□ 0.68
LINC00339-203ENST00000420503 BRWD3Q6RI45 1802 aa19.29■□□□□ 0.68
LINC00339-203ENST00000420503 SLIT2O94813 1529 aa19.29■□□□□ 0.68
LINC00339-203ENST00000420503 USP32Q8NFA0 1604 aa19.29■□□□□ 0.68
LINC00339-203ENST00000420503 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.28■□□□□ 0.68
LINC00339-203ENST00000420503 SAFB2Q14151 953 aaKnown RBP eCLIP19.28■□□□□ 0.68
LINC00339-203ENST00000420503 KIF1AQ12756 1690 aa19.27■□□□□ 0.68
LINC00339-203ENST00000420503 CFAP70Q5T0N1 1121 aa19.27■□□□□ 0.68
LINC00339-203ENST00000420503 KRT28Q7Z3Y7 464 aa19.26■□□□□ 0.67
LINC00339-203ENST00000420503 ABCA3Q99758 1704 aa19.25■□□□□ 0.67
LINC00339-203ENST00000420503 UNC5CLQ8IV45 518 aa19.25■□□□□ 0.67
LINC00339-203ENST00000420503 NRXN1Q9ULB1 1477 aa19.24■□□□□ 0.67
LINC00339-203ENST00000420503 PLCH1Q4KWH8 1693 aa19.24■□□□□ 0.67
LINC00339-203ENST00000420503 C14orf93Q9H972 538 aaKnown RBP19.23■□□□□ 0.67
LINC00339-203ENST00000420503 TNS3Q68CZ2 1445 aa19.23■□□□□ 0.67
LINC00339-203ENST00000420503 DEFB132Q7Z7B7 95 aa19.22■□□□□ 0.67
LINC00339-203ENST00000420503 PRAM1Q96QH2 718 aa19.22■□□□□ 0.67
LINC00339-203ENST00000420503 PHF8Q9UPP1 1060 aa19.22■□□□□ 0.67
LINC00339-203ENST00000420503 PMFBP1Q8TBY8 1022 aa19.2■□□□□ 0.66
LINC00339-203ENST00000420503 ZRANB1Q9UGI0 708 aa19.2■□□□□ 0.66
LINC00339-203ENST00000420503 LMOD2Q6P5Q4 547 aa19.19■□□□□ 0.66
LINC00339-203ENST00000420503 SEPT12Q8IYM1 358 aa19.18■□□□□ 0.66
LINC00339-203ENST00000420503 HAP1P54257 671 aaPredicted RBP19.17■□□□□ 0.66
LINC00339-203ENST00000420503 HIRIP3Q9BW71 556 aaPredicted RBP19.17■□□□□ 0.66
LINC00339-203ENST00000420503 ADGRB1O14514 1584 aa19.17■□□□□ 0.66
LINC00339-203ENST00000420503 SIRT1Q96EB6 747 aa19.16■□□□□ 0.66
LINC00339-203ENST00000420503 TRPM3Q9HCF6 1732 aaPredicted RBP19.16■□□□□ 0.66
LINC00339-203ENST00000420503 DHX57Q6P158 1386 aaKnown RBP19.16■□□□□ 0.66
LINC00339-203ENST00000420503 BLMP54132 1417 aaPredicted RBP19.16■□□□□ 0.66
LINC00339-203ENST00000420503 FAM83GA6ND36 823 aa19.15■□□□□ 0.66
LINC00339-203ENST00000420503 PRR36Q9H6K5 1346 aa19.15■□□□□ 0.66
LINC00339-203ENST00000420503 NRAPQ86VF7 1730 aa19.14■□□□□ 0.66
LINC00339-203ENST00000420503 NWD2Q9ULI1 1742 aa19.14■□□□□ 0.66
LINC00339-203ENST00000420503 VPS72Q15906 364 aa19.14■□□□□ 0.65
LINC00339-203ENST00000420503 CCDC9Q9Y3X0 531 aaKnown RBP19.14■□□□□ 0.65
LINC00339-203ENST00000420503 SBNO1A3KN83 1393 aa19.14■□□□□ 0.65
LINC00339-203ENST00000420503 CCDC125Q86Z20 511 aa19.13■□□□□ 0.65
LINC00339-203ENST00000420503 TRAK1Q9UPV9 953 aa19.13■□□□□ 0.65
LINC00339-203ENST00000420503 DLC1Q96QB1 1528 aa19.13■□□□□ 0.65
LINC00339-203ENST00000420503 ADGRB2O60241 1585 aa19.13■□□□□ 0.65
LINC00339-203ENST00000420503 RAB3GAP2Q9H2M9 1393 aa19.12■□□□□ 0.65
LINC00339-203ENST00000420503 MINK1Q8N4C8 1332 aaPredicted RBP19.12■□□□□ 0.65
LINC00339-203ENST00000420503 PSME1Q06323 249 aa19.12■□□□□ 0.65
LINC00339-203ENST00000420503 POGKQ9P215 609 aa19.11■□□□□ 0.65
LINC00339-203ENST00000420503 ALS2Q96Q42 1657 aa19.11■□□□□ 0.65
LINC00339-203ENST00000420503 ANKARQ7Z5J8 1434 aa19.09■□□□□ 0.65
LINC00339-203ENST00000420503 ARHGEF10O15013 1369 aa19.09■□□□□ 0.65
LINC00339-203ENST00000420503 FAM182BQ5T319 152 aa19.09■□□□□ 0.65
LINC00339-203ENST00000420503 KDM2AQ9Y2K7 1162 aa19.09■□□□□ 0.65
LINC00339-203ENST00000420503 CRYBG1Q9Y4K1 1723 aa19.08■□□□□ 0.65
LINC00339-203ENST00000420503 ONECUT3O60422 494 aaPredicted RBP19.08■□□□□ 0.64
LINC00339-203ENST00000420503 FAM98CQ17RN3 349 aaKnown RBP19.08■□□□□ 0.64
LINC00339-203ENST00000420503 KRT27Q7Z3Y8 459 aa19.08■□□□□ 0.64
LINC00339-203ENST00000420503 A0A0G2JS52 829 aa19.07■□□□□ 0.64
LINC00339-203ENST00000420503 MYT1Q01538 1121 aa19.07■□□□□ 0.64
LINC00339-203ENST00000420503 BTG4Q9NY30 223 aa19.07■□□□□ 0.64
LINC00339-203ENST00000420503 ACIN1Q9UKV3 1341 aaKnown RBP19.06■□□□□ 0.64
LINC00339-203ENST00000420503 TULP4Q9NRJ4 1543 aa19.05■□□□□ 0.64
LINC00339-203ENST00000420503 PSDA5PKW4 1024 aaPredicted RBP19.05■□□□□ 0.64
LINC00339-203ENST00000420503 COL14A1Q05707 1796 aaKnown RBP19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms