RNA–Protein interactions for RNA: ENST00000420121.5

SSBP3-206, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-206ENST00000420121 HRCP23327 699 aa16.35■□□□□ 0.21
SSBP3-206ENST00000420121 TMEM132EQ6IEE7 984 aa16.35■□□□□ 0.21
SSBP3-206ENST00000420121 YTHDC2Q9H6S0 1430 aaKnown RBP16.35■□□□□ 0.21
SSBP3-206ENST00000420121 PLEKHH1Q9ULM0 1364 aa16.34■□□□□ 0.21
SSBP3-206ENST00000420121 FMN2Q9NZ56 1722 aa16.33■□□□□ 0.21
SSBP3-206ENST00000420121 ORAI2Q96SN7 254 aa16.33■□□□□ 0.2
SSBP3-206ENST00000420121 C14orf93Q9H972 538 aaKnown RBP16.33■□□□□ 0.2
SSBP3-206ENST00000420121 WAPLQ7Z5K2 1190 aa16.32■□□□□ 0.2
SSBP3-206ENST00000420121 STK26Q9P289 416 aa16.32■□□□□ 0.2
SSBP3-206ENST00000420121 ADGRB1O14514 1584 aa16.31■□□□□ 0.2
SSBP3-206ENST00000420121 PNPLA6Q8IY17 1366 aa16.31■□□□□ 0.2
SSBP3-206ENST00000420121 RGPD8O14715 1765 aaPredicted RBP16.31■□□□□ 0.2
SSBP3-206ENST00000420121 CFAP70Q5T0N1 1121 aa16.3■□□□□ 0.2
SSBP3-206ENST00000420121 SOS2Q07890 1332 aaPredicted RBP16.29■□□□□ 0.2
SSBP3-206ENST00000420121 LRRC59Q96AG4 307 aaKnown RBP16.29■□□□□ 0.2
SSBP3-206ENST00000420121 COL22A1Q8NFW1 1626 aaPredicted RBP16.28■□□□□ 0.2
SSBP3-206ENST00000420121 DLC1Q96QB1 1528 aa16.28■□□□□ 0.2
SSBP3-206ENST00000420121 PXDNQ92626 1479 aa16.28■□□□□ 0.2
SSBP3-206ENST00000420121 SIRT1Q96EB6 747 aa16.27■□□□□ 0.2
SSBP3-206ENST00000420121 DHX57Q6P158 1386 aaKnown RBP16.26■□□□□ 0.19
SSBP3-206ENST00000420121 KIF1AQ12756 1690 aa16.24■□□□□ 0.19
SSBP3-206ENST00000420121 USP32Q8NFA0 1604 aa16.24■□□□□ 0.19
SSBP3-206ENST00000420121 NUTM2BA6NNL0 878 aaPredicted RBP16.24■□□□□ 0.19
SSBP3-206ENST00000420121 NUTM2EB1AL46 878 aaPredicted RBP16.24■□□□□ 0.19
SSBP3-206ENST00000420121 NUTM2AQ8IVF1 878 aaPredicted RBP16.24■□□□□ 0.19
SSBP3-206ENST00000420121 ADGRB2O60241 1585 aa16.24■□□□□ 0.19
SSBP3-206ENST00000420121 MEX3CQ5U5Q3 659 aaKnown RBP16.23■□□□□ 0.19
SSBP3-206ENST00000420121 MARF1Q9Y4F3 1742 aaKnown RBP16.22■□□□□ 0.19
SSBP3-206ENST00000420121 ESCO1Q5FWF5 840 aa16.22■□□□□ 0.19
SSBP3-206ENST00000420121 ARHGEF28Q8N1W1 1705 aaKnown RBP16.22■□□□□ 0.19
SSBP3-206ENST00000420121 NUTM2FA1L443 756 aa16.21■□□□□ 0.19
SSBP3-206ENST00000420121 DCAF11Q8TEB1 546 aa16.21■□□□□ 0.19
SSBP3-206ENST00000420121 NPHP3Q7Z494 1330 aa16.2■□□□□ 0.18
SSBP3-206ENST00000420121 ZNF772Q68DY9 489 aaPredicted RBP16.2■□□□□ 0.18
SSBP3-206ENST00000420121 PRAM1Q96QH2 718 aa16.2■□□□□ 0.18
SSBP3-206ENST00000420121 KDM2AQ9Y2K7 1162 aa16.2■□□□□ 0.18
SSBP3-206ENST00000420121 AFF2P51816 1311 aa16.19■□□□□ 0.18
SSBP3-206ENST00000420121 FOXO3O43524 673 aa16.19■□□□□ 0.18
SSBP3-206ENST00000420121 KIAA1210Q9ULL0 1709 aa16.19■□□□□ 0.18
SSBP3-206ENST00000420121 STAC3Q96MF2 364 aa16.18■□□□□ 0.18
SSBP3-206ENST00000420121 XPCQ01831 940 aaPredicted RBP16.17■□□□□ 0.18
SSBP3-206ENST00000420121 SAFB2Q14151 953 aaKnown RBP eCLIP16.17■□□□□ 0.18
SSBP3-206ENST00000420121 C8orf37Q96NL8 207 aa16.16■□□□□ 0.18
SSBP3-206ENST00000420121 CDK12Q9NYV4 1490 aaPredicted RBP16.16■□□□□ 0.18
SSBP3-206ENST00000420121 ABCA3Q99758 1704 aa16.15■□□□□ 0.18
SSBP3-206ENST00000420121 TRAK1Q9UPV9 953 aa16.15■□□□□ 0.18
SSBP3-206ENST00000420121 TRPM3Q9HCF6 1732 aaPredicted RBP16.14■□□□□ 0.17
SSBP3-206ENST00000420121 ANKARQ7Z5J8 1434 aa16.14■□□□□ 0.17
SSBP3-206ENST00000420121 ADAMTS2O95450 1211 aa16.14■□□□□ 0.17
SSBP3-206ENST00000420121 POGKQ9P215 609 aa16.13■□□□□ 0.17
SSBP3-206ENST00000420121 SPATA31A3Q5VYP0 1347 aa16.13■□□□□ 0.17
SSBP3-206ENST00000420121 PHF8Q9UPP1 1060 aa16.12■□□□□ 0.17
SSBP3-206ENST00000420121 TULP4Q9NRJ4 1543 aa16.12■□□□□ 0.17
SSBP3-206ENST00000420121 PRR36Q9H6K5 1346 aa16.12■□□□□ 0.17
SSBP3-206ENST00000420121 RXRBP28702 533 aa16.11■□□□□ 0.17
SSBP3-206ENST00000420121 ALS2Q96Q42 1657 aa16.11■□□□□ 0.17
SSBP3-206ENST00000420121 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.11■□□□□ 0.17
SSBP3-206ENST00000420121 RGS12O14924 1447 aa16.11■□□□□ 0.17
SSBP3-206ENST00000420121 KRT28Q7Z3Y7 464 aa16.1■□□□□ 0.17
SSBP3-206ENST00000420121 FNBP4Q8N3X1 1017 aaPredicted RBP16.1■□□□□ 0.17
SSBP3-206ENST00000420121 NGLY1Q96IV0 654 aa16.1■□□□□ 0.17
SSBP3-206ENST00000420121 HIRIP3Q9BW71 556 aaPredicted RBP16.1■□□□□ 0.17
SSBP3-206ENST00000420121 MINK1Q8N4C8 1332 aaPredicted RBP16.1■□□□□ 0.17
SSBP3-206ENST00000420121 ITSN1Q15811 1721 aa16.1■□□□□ 0.17
SSBP3-206ENST00000420121 TNS3Q68CZ2 1445 aa16.1■□□□□ 0.17
SSBP3-206ENST00000420121 QTRT2Q9H974 415 aaKnown RBP16.09■□□□□ 0.17
SSBP3-206ENST00000420121 BCL9LQ86UU0 1499 aa16.09■□□□□ 0.17
SSBP3-206ENST00000420121 TOPAZ1Q8N9V7 1692 aa16.08■□□□□ 0.17
SSBP3-206ENST00000420121 CRYBG1Q9Y4K1 1723 aa16.08■□□□□ 0.17
SSBP3-206ENST00000420121 SBNO1A3KN83 1393 aa16.08■□□□□ 0.16
SSBP3-206ENST00000420121 ATRNO75882 1429 aa16.08■□□□□ 0.16
SSBP3-206ENST00000420121 ATP7BP35670 1465 aa16.08■□□□□ 0.16
SSBP3-206ENST00000420121 WASLO00401 505 aaPredicted RBP16.07■□□□□ 0.16
SSBP3-206ENST00000420121 RBM6P78332 1123 aaKnown RBP16.07■□□□□ 0.16
SSBP3-206ENST00000420121 SLIT2O94813 1529 aa16.06■□□□□ 0.16
SSBP3-206ENST00000420121 NBPF1Q3BBV0 1214 aa16.06■□□□□ 0.16
SSBP3-206ENST00000420121 PMFBP1Q8TBY8 1022 aa16.06■□□□□ 0.16
SSBP3-206ENST00000420121 USP21Q9UK80 565 aa16.06■□□□□ 0.16
SSBP3-206ENST00000420121 PLCH1Q4KWH8 1693 aa16.05■□□□□ 0.16
SSBP3-206ENST00000420121 TRPM1Q7Z4N2 1603 aa16.05■□□□□ 0.16
SSBP3-206ENST00000420121 EIF3AQ14152 1382 aaKnown RBP16.05■□□□□ 0.16
SSBP3-206ENST00000420121 UPF1Q92900 1129 aaKnown RBP eCLIP16.04■□□□□ 0.16
SSBP3-206ENST00000420121 NWD2Q9ULI1 1742 aa16.03■□□□□ 0.16
SSBP3-206ENST00000420121 PSME1Q06323 249 aa16.03■□□□□ 0.16
SSBP3-206ENST00000420121 SIN3AQ96ST3 1273 aa16.03■□□□□ 0.16
SSBP3-206ENST00000420121 GLI3P10071 1580 aa16.03■□□□□ 0.16
SSBP3-206ENST00000420121 QRICH2Q9H0J4 1663 aa16.02■□□□□ 0.16
SSBP3-206ENST00000420121 CABLES1Q8TDN4 633 aa16.02■□□□□ 0.16
SSBP3-206ENST00000420121 L3MBTL2Q969R5 705 aa16.02■□□□□ 0.16
SSBP3-206ENST00000420121 TRPC5Q9UL62 973 aaPredicted RBP16.02■□□□□ 0.16
SSBP3-206ENST00000420121 ARHGEF10O15013 1369 aa16.01■□□□□ 0.15
SSBP3-206ENST00000420121 NRAPQ86VF7 1730 aa16.01■□□□□ 0.15
SSBP3-206ENST00000420121 NUDT16Q96DE0 195 aaKnown RBP15.99■□□□□ 0.15
SSBP3-206ENST00000420121 BRWD3Q6RI45 1802 aa15.98■□□□□ 0.15
SSBP3-206ENST00000420121 CDK19Q9BWU1 502 aa15.98■□□□□ 0.15
SSBP3-206ENST00000420121 PHRF1Q9P1Y6 1649 aaKnown RBP15.97■□□□□ 0.15
SSBP3-206ENST00000420121 EP400Q96L91 3159 aa15.97■□□□□ 0.15
SSBP3-206ENST00000420121 RALGAPBQ86X10 1494 aa15.97■□□□□ 0.15
SSBP3-206ENST00000420121 POLR3AO14802 1390 aaPredicted RBP15.97■□□□□ 0.15
SSBP3-206ENST00000420121 GPRASP1Q5JY77 1395 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms