RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 ADAMTS2O95450 1211 aa22.09■■□□□ 1.13
RPS28-201ENST00000417088 WAPLQ7Z5K2 1190 aa22.08■■□□□ 1.13
RPS28-201ENST00000417088 QTRT2Q9H974 415 aaKnown RBP22.08■■□□□ 1.13
RPS28-201ENST00000417088 LRPPRCP42704 1394 aaKnown RBP22.08■■□□□ 1.12
RPS28-201ENST00000417088 CDC42BPGQ6DT37 1551 aa22.08■■□□□ 1.12
RPS28-201ENST00000417088 TECPR2O15040 1411 aa22.07■■□□□ 1.12
RPS28-201ENST00000417088 ESCO1Q5FWF5 840 aa22.07■■□□□ 1.12
RPS28-201ENST00000417088 TMEM132EQ6IEE7 984 aa22.07■■□□□ 1.12
RPS28-201ENST00000417088 NGLY1Q96IV0 654 aa22.07■■□□□ 1.12
RPS28-201ENST00000417088 IFT172Q9UG01 1749 aa22.06■■□□□ 1.12
RPS28-201ENST00000417088 ABCC11Q96J66 1382 aa22.06■■□□□ 1.12
RPS28-201ENST00000417088 RBM6P78332 1123 aaKnown RBP22.05■■□□□ 1.12
RPS28-201ENST00000417088 PIK3C2GO75747 1445 aa22.05■■□□□ 1.12
RPS28-201ENST00000417088 NPHP3Q7Z494 1330 aa22.04■■□□□ 1.12
RPS28-201ENST00000417088 PLEKHH1Q9ULM0 1364 aa22.03■■□□□ 1.12
RPS28-201ENST00000417088 ACIN1Q9UKV3 1341 aaKnown RBP22.03■■□□□ 1.12
RPS28-201ENST00000417088 NUTM2FA1L443 756 aa22.02■■□□□ 1.12
RPS28-201ENST00000417088 FOXO3O43524 673 aa22.02■■□□□ 1.12
RPS28-201ENST00000417088 RGS12O14924 1447 aa22.02■■□□□ 1.12
RPS28-201ENST00000417088 YTHDC2Q9H6S0 1430 aaKnown RBP22■■□□□ 1.11
RPS28-201ENST00000417088 XPCQ01831 940 aaPredicted RBP22■■□□□ 1.11
RPS28-201ENST00000417088 PXDNQ92626 1479 aa22■■□□□ 1.11
RPS28-201ENST00000417088 COL22A1Q8NFW1 1626 aaPredicted RBP21.99■■□□□ 1.11
RPS28-201ENST00000417088 FNBP4Q8N3X1 1017 aaPredicted RBP21.99■■□□□ 1.11
RPS28-201ENST00000417088 C14orf93Q9H972 538 aaKnown RBP21.99■■□□□ 1.11
RPS28-201ENST00000417088 USP21Q9UK80 565 aa21.99■■□□□ 1.11
RPS28-201ENST00000417088 KNDC1Q76NI1 1749 aa21.99■■□□□ 1.11
RPS28-201ENST00000417088 SIRT1Q96EB6 747 aa21.98■■□□□ 1.11
RPS28-201ENST00000417088 MYOM2P54296 1465 aa21.97■■□□□ 1.11
RPS28-201ENST00000417088 CFAP70Q5T0N1 1121 aa21.96■■□□□ 1.11
RPS28-201ENST00000417088 TRPC5Q9UL62 973 aaPredicted RBP21.96■■□□□ 1.11
RPS28-201ENST00000417088 NRXN1Q9ULB1 1477 aa21.96■■□□□ 1.11
RPS28-201ENST00000417088 RAB3GAP2Q9H2M9 1393 aa21.93■■□□□ 1.1
RPS28-201ENST00000417088 FMN2Q9NZ56 1722 aa21.93■■□□□ 1.1
RPS28-201ENST00000417088 ATRNO75882 1429 aa21.92■■□□□ 1.1
RPS28-201ENST00000417088 DHX57Q6P158 1386 aaKnown RBP21.92■■□□□ 1.1
RPS28-201ENST00000417088 SPATA31A3Q5VYP0 1347 aa21.9■■□□□ 1.1
RPS28-201ENST00000417088 KRT28Q7Z3Y7 464 aa21.89■■□□□ 1.09
RPS28-201ENST00000417088 BCL9LQ86UU0 1499 aa21.89■■□□□ 1.09
RPS28-201ENST00000417088 PRAM1Q96QH2 718 aa21.88■■□□□ 1.09
RPS28-201ENST00000417088 KIF1AQ12756 1690 aa21.87■■□□□ 1.09
RPS28-201ENST00000417088 SAFB2Q14151 953 aaKnown RBP eCLIP21.86■■□□□ 1.09
RPS28-201ENST00000417088 PHF8Q9UPP1 1060 aa21.86■■□□□ 1.09
RPS28-201ENST00000417088 MARF1Q9Y4F3 1742 aaKnown RBP21.85■■□□□ 1.09
RPS28-201ENST00000417088 ATAD2Q6PL18 1390 aa21.85■■□□□ 1.09
RPS28-201ENST00000417088 POGKQ9P215 609 aa21.83■■□□□ 1.09
RPS28-201ENST00000417088 RGPD8O14715 1765 aaPredicted RBP21.83■■□□□ 1.09
RPS28-201ENST00000417088 DLC1Q96QB1 1528 aa21.82■■□□□ 1.08
RPS28-201ENST00000417088 PSME1Q06323 249 aa21.82■■□□□ 1.08
RPS28-201ENST00000417088 GJD4Q96KN9 370 aaPredicted RBP21.82■■□□□ 1.08
RPS28-201ENST00000417088 ADGRB1O14514 1584 aa21.81■■□□□ 1.08
RPS28-201ENST00000417088 SLIT2O94813 1529 aa21.8■■□□□ 1.08
RPS28-201ENST00000417088 UNC5CLQ8IV45 518 aa21.8■■□□□ 1.08
RPS28-201ENST00000417088 TNS3Q68CZ2 1445 aa21.8■■□□□ 1.08
RPS28-201ENST00000417088 DCAF11Q8TEB1 546 aa21.79■■□□□ 1.08
RPS28-201ENST00000417088 TRAK1Q9UPV9 953 aa21.79■■□□□ 1.08
RPS28-201ENST00000417088 KDM2AQ9Y2K7 1162 aa21.79■■□□□ 1.08
RPS28-201ENST00000417088 SBNO1A3KN83 1393 aa21.78■■□□□ 1.08
RPS28-201ENST00000417088 CABLES1Q8TDN4 633 aa21.78■■□□□ 1.08
RPS28-201ENST00000417088 ANKARQ7Z5J8 1434 aa21.78■■□□□ 1.08
RPS28-201ENST00000417088 PMFBP1Q8TBY8 1022 aa21.77■■□□□ 1.08
RPS28-201ENST00000417088 USP32Q8NFA0 1604 aa21.77■■□□□ 1.07
RPS28-201ENST00000417088 HRCP23327 699 aa21.76■■□□□ 1.07
RPS28-201ENST00000417088 HAP1P54257 671 aaPredicted RBP21.76■■□□□ 1.07
RPS28-201ENST00000417088 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.76■■□□□ 1.07
RPS28-201ENST00000417088 ADGRB2O60241 1585 aa21.75■■□□□ 1.07
RPS28-201ENST00000417088 PLEKHG5O94827 1062 aa21.75■■□□□ 1.07
RPS28-201ENST00000417088 HIRIP3Q9BW71 556 aaPredicted RBP21.75■■□□□ 1.07
RPS28-201ENST00000417088 RALGAPBQ86X10 1494 aa21.75■■□□□ 1.07
RPS28-201ENST00000417088 MINK1Q8N4C8 1332 aaPredicted RBP21.75■■□□□ 1.07
RPS28-201ENST00000417088 LMOD2Q6P5Q4 547 aa21.74■■□□□ 1.07
RPS28-201ENST00000417088 STAC3Q96MF2 364 aa21.74■■□□□ 1.07
RPS28-201ENST00000417088 GLI3P10071 1580 aa21.74■■□□□ 1.07
RPS28-201ENST00000417088 ARHGEF10O15013 1369 aa21.74■■□□□ 1.07
RPS28-201ENST00000417088 EP400Q96L91 3159 aa21.72■■□□□ 1.07
RPS28-201ENST00000417088 PRR36Q9H6K5 1346 aa21.72■■□□□ 1.07
RPS28-201ENST00000417088 WASLO00401 505 aaPredicted RBP21.7■■□□□ 1.06
RPS28-201ENST00000417088 VPS72Q15906 364 aa21.7■■□□□ 1.06
RPS28-201ENST00000417088 CCDC125Q86Z20 511 aa21.7■■□□□ 1.06
RPS28-201ENST00000417088 EIF3AQ14152 1382 aaKnown RBP21.69■■□□□ 1.06
RPS28-201ENST00000417088 FAM83GA6ND36 823 aa21.68■■□□□ 1.06
RPS28-201ENST00000417088 ABCA3Q99758 1704 aa21.67■■□□□ 1.06
RPS28-201ENST00000417088 TULP4Q9NRJ4 1543 aa21.67■■□□□ 1.06
RPS28-201ENST00000417088 GPRASP1Q5JY77 1395 aa21.67■■□□□ 1.06
RPS28-201ENST00000417088 SEPT12Q8IYM1 358 aa21.66■■□□□ 1.06
RPS28-201ENST00000417088 TRPM3Q9HCF6 1732 aaPredicted RBP21.66■■□□□ 1.06
RPS28-201ENST00000417088 ONECUT3O60422 494 aaPredicted RBP21.65■■□□□ 1.06
RPS28-201ENST00000417088 CCDC9Q9Y3X0 531 aaKnown RBP21.65■■□□□ 1.06
RPS28-201ENST00000417088 PLCH1Q4KWH8 1693 aa21.65■■□□□ 1.06
RPS28-201ENST00000417088 NWD2Q9ULI1 1742 aa21.64■■□□□ 1.06
RPS28-201ENST00000417088 NGDNQ8NEJ9 315 aaKnown RBP21.63■■□□□ 1.05
RPS28-201ENST00000417088 SRCAPQ6ZRS2 3230 aa21.62■■□□□ 1.05
RPS28-201ENST00000417088 ZRANB1Q9UGI0 708 aa21.62■■□□□ 1.05
RPS28-201ENST00000417088 ALS2Q96Q42 1657 aa21.62■■□□□ 1.05
RPS28-201ENST00000417088 BRWD3Q6RI45 1802 aa21.62■■□□□ 1.05
RPS28-201ENST00000417088 BLMP54132 1417 aaPredicted RBP21.61■■□□□ 1.05
RPS28-201ENST00000417088 NUDT16Q96DE0 195 aaKnown RBP21.6■■□□□ 1.05
RPS28-201ENST00000417088 ARHGEF28Q8N1W1 1705 aaKnown RBP21.6■■□□□ 1.05
RPS28-201ENST00000417088 PAK3O75914 559 aaPredicted RBP21.59■■□□□ 1.05
RPS28-201ENST00000417088 BTG4Q9NY30 223 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms