RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 DISP3Q9P2K9 1392 aa19.87■□□□□ 0.77
SF3B1-204ENST00000414963 KIF7Q2M1P5 1343 aa19.87■□□□□ 0.77
SF3B1-204ENST00000414963 QRICH2Q9H0J4 1663 aa19.87■□□□□ 0.77
SF3B1-204ENST00000414963 NKTRP30414 1462 aaKnown RBP19.85■□□□□ 0.77
SF3B1-204ENST00000414963 EVC2Q86UK5 1308 aa19.84■□□□□ 0.77
SF3B1-204ENST00000414963 SAFB2Q14151 953 aaKnown RBP eCLIP19.84■□□□□ 0.77
SF3B1-204ENST00000414963 MINK1Q8N4C8 1332 aaPredicted RBP19.82■□□□□ 0.76
SF3B1-204ENST00000414963 TULP4Q9NRJ4 1543 aa19.81■□□□□ 0.76
SF3B1-204ENST00000414963 ADGRB2O60241 1585 aa19.79■□□□□ 0.76
SF3B1-204ENST00000414963 NCOA3Q9Y6Q9 1424 aa19.79■□□□□ 0.76
SF3B1-204ENST00000414963 WASLO00401 505 aaPredicted RBP19.79■□□□□ 0.76
SF3B1-204ENST00000414963 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.79■□□□□ 0.76
SF3B1-204ENST00000414963 PROSER2Q86WR7 435 aaPredicted RBP19.78■□□□□ 0.76
SF3B1-204ENST00000414963 CDK19Q9BWU1 502 aa19.78■□□□□ 0.76
SF3B1-204ENST00000414963 ZNF335Q9H4Z2 1342 aaPredicted RBP19.76■□□□□ 0.75
SF3B1-204ENST00000414963 STRCP1A6NGW2 1772 aa19.75■□□□□ 0.75
SF3B1-204ENST00000414963 DDX10Q13206 875 aaKnown RBP19.75■□□□□ 0.75
SF3B1-204ENST00000414963 ADGRL3Q9HAR2 1447 aa19.74■□□□□ 0.75
SF3B1-204ENST00000414963 ATAD2Q6PL18 1390 aa19.73■□□□□ 0.75
SF3B1-204ENST00000414963 SRPK2P78362 688 aaKnown RBP19.73■□□□□ 0.75
SF3B1-204ENST00000414963 CABP2Q9NPB3 220 aa19.73■□□□□ 0.75
SF3B1-204ENST00000414963 TMEM94Q12767 1356 aa19.72■□□□□ 0.75
SF3B1-204ENST00000414963 POLR3GLQ9BT43 218 aa19.72■□□□□ 0.75
SF3B1-204ENST00000414963 NINLQ9Y2I6 1382 aa19.71■□□□□ 0.75
SF3B1-204ENST00000414963 C19orf44Q9H6X5 657 aa19.71■□□□□ 0.75
SF3B1-204ENST00000414963 LRRC7Q96NW7 1537 aa19.7■□□□□ 0.74
SF3B1-204ENST00000414963 CDC42BPGQ6DT37 1551 aa19.7■□□□□ 0.74
SF3B1-204ENST00000414963 NUDT16Q96DE0 195 aaKnown RBP19.69■□□□□ 0.74
SF3B1-204ENST00000414963 RBM33Q96EV2 1170 aaKnown RBP19.69■□□□□ 0.74
SF3B1-204ENST00000414963 DIEXFQ68CQ4 756 aaKnown RBP19.68■□□□□ 0.74
SF3B1-204ENST00000414963 CCDC61Q9Y6R9 512 aa19.68■□□□□ 0.74
SF3B1-204ENST00000414963 NALCNQ8IZF0 1738 aa19.68■□□□□ 0.74
SF3B1-204ENST00000414963 ANKARQ7Z5J8 1434 aa19.68■□□□□ 0.74
SF3B1-204ENST00000414963 PRR36Q9H6K5 1346 aa19.67■□□□□ 0.74
SF3B1-204ENST00000414963 DCCP43146 1447 aa19.67■□□□□ 0.74
SF3B1-204ENST00000414963 C14orf37Q86TY3 774 aa19.66■□□□□ 0.74
SF3B1-204ENST00000414963 SLC12A5Q9H2X9 1139 aa19.66■□□□□ 0.74
SF3B1-204ENST00000414963 ATP7BP35670 1465 aa19.66■□□□□ 0.74
SF3B1-204ENST00000414963 PANK3Q9H999 370 aa19.65■□□□□ 0.74
SF3B1-204ENST00000414963 MYOM1P52179 1685 aa19.65■□□□□ 0.74
SF3B1-204ENST00000414963 TMC1Q8TDI8 760 aa19.64■□□□□ 0.73
SF3B1-204ENST00000414963 LTBP4Q8N2S1 1624 aa19.64■□□□□ 0.73
SF3B1-204ENST00000414963 FMN2Q9NZ56 1722 aa19.63■□□□□ 0.73
SF3B1-204ENST00000414963 PLEKHG3A1L390 1219 aa19.63■□□□□ 0.73
SF3B1-204ENST00000414963 PER1O15534 1290 aaPredicted RBP19.63■□□□□ 0.73
SF3B1-204ENST00000414963 CABP1Q9NZU7 370 aa19.63■□□□□ 0.73
SF3B1-204ENST00000414963 MSH6P52701 1360 aa19.62■□□□□ 0.73
SF3B1-204ENST00000414963 ANKRD36BQ8N2N9 1353 aa19.61■□□□□ 0.73
SF3B1-204ENST00000414963 ATF3P18847 181 aa19.61■□□□□ 0.73
SF3B1-204ENST00000414963 CADPS2Q86UW7 1296 aa19.61■□□□□ 0.73
SF3B1-204ENST00000414963 TERF2IPQ9NYB0 399 aa19.61■□□□□ 0.73
SF3B1-204ENST00000414963 USP32Q8NFA0 1604 aa19.61■□□□□ 0.73
SF3B1-204ENST00000414963 PPIP5K1Q6PFW1 1433 aa19.6■□□□□ 0.73
SF3B1-204ENST00000414963 XIRP1Q702N8 1843 aaKnown RBP19.6■□□□□ 0.73
SF3B1-204ENST00000414963 CARD14Q9BXL6 1004 aa19.59■□□□□ 0.73
SF3B1-204ENST00000414963 CD163L1Q9NR16 1453 aa19.59■□□□□ 0.73
SF3B1-204ENST00000414963 CPSF1Q10570 1443 aaKnown RBP19.59■□□□□ 0.73
SF3B1-204ENST00000414963 TOPAZ1Q8N9V7 1692 aa19.59■□□□□ 0.73
SF3B1-204ENST00000414963 NUTM2FA1L443 756 aa19.57■□□□□ 0.72
SF3B1-204ENST00000414963 HDGFL2Q7Z4V5 671 aaPredicted RBP19.57■□□□□ 0.72
SF3B1-204ENST00000414963 ZNF692Q9BU19 519 aaPredicted RBP19.57■□□□□ 0.72
SF3B1-204ENST00000414963 MST1RQ04912 1400 aa19.56■□□□□ 0.72
SF3B1-204ENST00000414963 A0A1W2PP64 1363 aa19.56■□□□□ 0.72
SF3B1-204ENST00000414963 POLR3AO14802 1390 aaPredicted RBP19.56■□□□□ 0.72
SF3B1-204ENST00000414963 C1orf167Q5SNV9 1468 aa19.55■□□□□ 0.72
SF3B1-204ENST00000414963 KNSTRNQ9Y448 316 aa19.55■□□□□ 0.72
SF3B1-204ENST00000414963 NPC1L1Q9UHC9 1359 aa19.54■□□□□ 0.72
SF3B1-204ENST00000414963 ITSN1Q15811 1721 aa19.54■□□□□ 0.72
SF3B1-204ENST00000414963 ACEP12821 1306 aa19.53■□□□□ 0.72
SF3B1-204ENST00000414963 PHF8Q9UPP1 1060 aa19.53■□□□□ 0.72
SF3B1-204ENST00000414963 AMER1Q5JTC6 1135 aaPredicted RBP19.52■□□□□ 0.72
SF3B1-204ENST00000414963 ESCO1Q5FWF5 840 aa19.51■□□□□ 0.71
SF3B1-204ENST00000414963 KTN1Q86UP2 1357 aaKnown RBP19.51■□□□□ 0.71
SF3B1-204ENST00000414963 NSD3Q9BZ95 1437 aa19.51■□□□□ 0.71
SF3B1-204ENST00000414963 PMFBP1Q8TBY8 1022 aa19.5■□□□□ 0.71
SF3B1-204ENST00000414963 SLAIN2Q9P270 581 aa19.5■□□□□ 0.71
SF3B1-204ENST00000414963 EDC4Q6P2E9 1401 aaKnown RBP19.5■□□□□ 0.71
SF3B1-204ENST00000414963 RGPD8O14715 1765 aaPredicted RBP19.49■□□□□ 0.71
SF3B1-204ENST00000414963 BRD4O60885 1362 aaPredicted RBP19.49■□□□□ 0.71
SF3B1-204ENST00000414963 ANP32CO43423 234 aa19.49■□□□□ 0.71
SF3B1-204ENST00000414963 NGDNQ8NEJ9 315 aaKnown RBP19.49■□□□□ 0.71
SF3B1-204ENST00000414963 ORAI2Q96SN7 254 aa19.49■□□□□ 0.71
SF3B1-204ENST00000414963 CGNL1Q0VF96 1302 aa19.49■□□□□ 0.71
SF3B1-204ENST00000414963 USP6P35125 1406 aa19.48■□□□□ 0.71
SF3B1-204ENST00000414963 SSH2Q76I76 1423 aa19.48■□□□□ 0.71
SF3B1-204ENST00000414963 IQSEC2Q5JU85 1478 aa19.47■□□□□ 0.71
SF3B1-204ENST00000414963 AKAP12Q02952 1782 aa19.47■□□□□ 0.71
SF3B1-204ENST00000414963 PRKRIP1Q9H875 184 aaPredicted RBP19.46■□□□□ 0.71
SF3B1-204ENST00000414963 NSD2O96028 1365 aa19.45■□□□□ 0.7
SF3B1-204ENST00000414963 MON2Q7Z3U7 1717 aa19.45■□□□□ 0.7
SF3B1-204ENST00000414963 RALBP1Q15311 655 aa19.45■□□□□ 0.7
SF3B1-204ENST00000414963 KIF1AQ12756 1690 aa19.45■□□□□ 0.7
SF3B1-204ENST00000414963 MIER1Q8N108 512 aa19.44■□□□□ 0.7
SF3B1-204ENST00000414963 TTC21BQ7Z4L5 1316 aa19.44■□□□□ 0.7
SF3B1-204ENST00000414963 FYB1O15117 783 aa19.43■□□□□ 0.7
SF3B1-204ENST00000414963 BRINP3Q76B58 766 aa19.43■□□□□ 0.7
SF3B1-204ENST00000414963 TTC21AQ8NDW8 1320 aa19.43■□□□□ 0.7
SF3B1-204ENST00000414963 PARD3Q8TEW0 1356 aa19.43■□□□□ 0.7
SF3B1-204ENST00000414963 FOXO3O43524 673 aa19.42■□□□□ 0.7
SF3B1-204ENST00000414963 PSME1Q06323 249 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms