RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 A6NJR5 290 aa12.56□□□□□ -0.4
SNHG3-201ENST00000413987 L3MBTL2Q969R5 705 aa12.56□□□□□ -0.4
SNHG3-201ENST00000413987 CFAP65Q6ZU64 1925 aaKnown RBP12.55□□□□□ -0.4
SNHG3-201ENST00000413987 UGGT1Q9NYU2 1555 aa12.54□□□□□ -0.4
SNHG3-201ENST00000413987 KDM4CQ9H3R0 1056 aa12.53□□□□□ -0.4
SNHG3-201ENST00000413987 ABCC3O15438 1527 aa12.53□□□□□ -0.4
SNHG3-201ENST00000413987 TET3O43151 1660 aa12.53□□□□□ -0.4
SNHG3-201ENST00000413987 RGL3Q3MIN7 710 aa12.53□□□□□ -0.4
SNHG3-201ENST00000413987 EFCAB6Q5THR3 1501 aa12.52□□□□□ -0.41
SNHG3-201ENST00000413987 CCDC144AA2RUR9 1427 aa12.52□□□□□ -0.41
SNHG3-201ENST00000413987 PPP1R15AO75807 674 aaPredicted RBP12.52□□□□□ -0.41
SNHG3-201ENST00000413987 SETQ01105 290 aaPredicted RBP12.52□□□□□ -0.41
SNHG3-201ENST00000413987 BCORL1Q5H9F3 1711 aa12.51□□□□□ -0.41
SNHG3-201ENST00000413987 NPATQ14207 1427 aa12.51□□□□□ -0.41
SNHG3-201ENST00000413987 HIRIP3Q9BW71 556 aaPredicted RBP12.5□□□□□ -0.41
SNHG3-201ENST00000413987 SMARCA5O60264 1052 aaPredicted RBP12.5□□□□□ -0.41
SNHG3-201ENST00000413987 AAMPQ13685 434 aa12.5□□□□□ -0.41
SNHG3-201ENST00000413987 PLCD4Q9BRC7 762 aa12.5□□□□□ -0.41
SNHG3-201ENST00000413987 ERICH6BQ5W0A0 696 aa12.49□□□□□ -0.41
SNHG3-201ENST00000413987 SPHKAPQ2M3C7 1700 aa12.49□□□□□ -0.41
SNHG3-201ENST00000413987 CAMSAP1Q5T5Y3 1602 aa12.49□□□□□ -0.41
SNHG3-201ENST00000413987 NBPF8Q3BBV2 869 aa12.48□□□□□ -0.41
SNHG3-201ENST00000413987 FBXO31Q5XUX0 539 aaPredicted RBP12.48□□□□□ -0.41
SNHG3-201ENST00000413987 PRDM10Q9NQV6 1147 aa12.48□□□□□ -0.41
SNHG3-201ENST00000413987 CLTCL1P53675 1640 aa12.48□□□□□ -0.41
SNHG3-201ENST00000413987 REREQ9P2R6 1566 aa12.47□□□□□ -0.41
SNHG3-201ENST00000413987 LMTK2Q8IWU2 1503 aa12.47□□□□□ -0.41
SNHG3-201ENST00000413987 ANP32CO43423 234 aa12.47□□□□□ -0.41
SNHG3-201ENST00000413987 CLTCQ00610 1675 aaKnown RBP12.47□□□□□ -0.41
SNHG3-201ENST00000413987 DDX10Q13206 875 aaKnown RBP12.46□□□□□ -0.41
SNHG3-201ENST00000413987 DCAF11Q8TEB1 546 aa12.46□□□□□ -0.41
SNHG3-201ENST00000413987 TRPM2O94759 1503 aa12.46□□□□□ -0.41
SNHG3-201ENST00000413987 ANKRD13AQ8IZ07 590 aa12.46□□□□□ -0.42
SNHG3-201ENST00000413987 SERPINA10Q9UK55 444 aa12.46□□□□□ -0.42
SNHG3-201ENST00000413987 AGLP35573 1532 aa12.46□□□□□ -0.42
SNHG3-201ENST00000413987 PTPRTO14522 1441 aa12.45□□□□□ -0.42
SNHG3-201ENST00000413987 CCDC97Q96F63 343 aaPredicted RBP12.45□□□□□ -0.42
SNHG3-201ENST00000413987 DEKP35659 375 aaKnown RBP12.45□□□□□ -0.42
SNHG3-201ENST00000413987 IGSF5Q9NSI5 407 aa12.45□□□□□ -0.42
SNHG3-201ENST00000413987 LOC102724159A0A0B4J2E5 919 aa12.44□□□□□ -0.42
SNHG3-201ENST00000413987 ONECUT3O60422 494 aaPredicted RBP12.44□□□□□ -0.42
SNHG3-201ENST00000413987 PWP2Q15269 919 aaKnown RBP12.44□□□□□ -0.42
SNHG3-201ENST00000413987 SPATA32Q96LK8 384 aa12.44□□□□□ -0.42
SNHG3-201ENST00000413987 SYNMO15061 1565 aa12.42□□□□□ -0.42
SNHG3-201ENST00000413987 ZC3H13Q5T200 1668 aaKnown RBP12.42□□□□□ -0.42
SNHG3-201ENST00000413987 PTMSP20962 102 aa12.42□□□□□ -0.42
SNHG3-201ENST00000413987 CEBPAP49715 358 aaPredicted RBP12.42□□□□□ -0.42
SNHG3-201ENST00000413987 NOL8Q76FK4 1167 aaKnown RBP12.42□□□□□ -0.42
SNHG3-201ENST00000413987 SPATA31E1Q6ZUB1 1445 aa12.41□□□□□ -0.42
SNHG3-201ENST00000413987 NUTM2DQ5VT03 806 aaPredicted RBP12.41□□□□□ -0.42
SNHG3-201ENST00000413987 MROH2AA6NES4 1674 aa12.41□□□□□ -0.42
SNHG3-201ENST00000413987 UNCXA6NJT0 531 aa12.41□□□□□ -0.42
SNHG3-201ENST00000413987 MAFGO15525 162 aa12.41□□□□□ -0.42
SNHG3-201ENST00000413987 EXOC8Q8IYI6 725 aa12.41□□□□□ -0.42
SNHG3-201ENST00000413987 AK7Q96M32 723 aa12.41□□□□□ -0.42
SNHG3-201ENST00000413987 ESF1Q9H501 851 aaKnown RBP12.4□□□□□ -0.42
SNHG3-201ENST00000413987 CIZ1Q9ULV3 898 aaPredicted RBP12.4□□□□□ -0.42
SNHG3-201ENST00000413987 RIPOR2Q9Y4F9 1068 aa12.4□□□□□ -0.42
SNHG3-201ENST00000413987 ANAPC15P60006 121 aa12.39□□□□□ -0.43
SNHG3-201ENST00000413987 NOS1P29475 1434 aa12.39□□□□□ -0.43
SNHG3-201ENST00000413987 PREX1Q8TCU6 1659 aa12.39□□□□□ -0.43
SNHG3-201ENST00000413987 IDI1Q13907 227 aa12.38□□□□□ -0.43
SNHG3-201ENST00000413987 ZMYM3Q14202 1370 aa12.38□□□□□ -0.43
SNHG3-201ENST00000413987 ARHGAP31Q2M1Z3 1444 aa12.38□□□□□ -0.43
SNHG3-201ENST00000413987 CNTLNQ9NXG0 1405 aa12.37□□□□□ -0.43
SNHG3-201ENST00000413987 ERVK-7P63135 1459 aa12.37□□□□□ -0.43
SNHG3-201ENST00000413987 PPP4R2Q9NY27 417 aa12.37□□□□□ -0.43
SNHG3-201ENST00000413987 NBPF1Q3BBV0 1214 aa12.35□□□□□ -0.43
SNHG3-201ENST00000413987 CNPY4Q8N129 248 aa12.35□□□□□ -0.43
SNHG3-201ENST00000413987 ARIH1Q9Y4X5 557 aaPredicted RBP12.35□□□□□ -0.43
SNHG3-201ENST00000413987 KIF1BO60333 1816 aa12.35□□□□□ -0.43
SNHG3-201ENST00000413987 PRAG1Q86YV5 1406 aa12.35□□□□□ -0.43
SNHG3-201ENST00000413987 HSP90AB4PQ58FF6 505 aa12.34□□□□□ -0.43
SNHG3-201ENST00000413987 PIK3C2BO00750 1634 aa12.34□□□□□ -0.43
SNHG3-201ENST00000413987 ADGRB3O60242 1522 aa12.34□□□□□ -0.43
SNHG3-201ENST00000413987 MYO5BQ9ULV0 1848 aa12.34□□□□□ -0.43
SNHG3-201ENST00000413987 BRD1O95696 1058 aa12.34□□□□□ -0.43
SNHG3-201ENST00000413987 FER1L4A9Z1Z3 1794 aa12.34□□□□□ -0.43
SNHG3-201ENST00000413987 ADGRF5Q8IZF2 1346 aa12.34□□□□□ -0.43
SNHG3-201ENST00000413987 TESPA1A2RU30 521 aaPredicted RBP12.33□□□□□ -0.44
SNHG3-201ENST00000413987 PATL2C9JE40 543 aaKnown RBP12.33□□□□□ -0.44
SNHG3-201ENST00000413987 SEMA3EO15041 775 aa12.33□□□□□ -0.44
SNHG3-201ENST00000413987 HSPA5P11021 654 aaKnown RBP12.33□□□□□ -0.44
SNHG3-201ENST00000413987 UHRF1BP1Q6BDS2 1440 aa12.33□□□□□ -0.44
SNHG3-201ENST00000413987 MADDQ8WXG6 1647 aa12.32□□□□□ -0.44
SNHG3-201ENST00000413987 NOP58Q9Y2X3 529 aaKnown RBP12.32□□□□□ -0.44
SNHG3-201ENST00000413987 FAM117AQ9C073 453 aa12.31□□□□□ -0.44
SNHG3-201ENST00000413987 ROCK2O75116 1388 aaKnown RBP12.31□□□□□ -0.44
SNHG3-201ENST00000413987 SPATA31D1Q6ZQQ2 1576 aa12.31□□□□□ -0.44
SNHG3-201ENST00000413987 RNF25Q96BH1 459 aaPredicted RBP12.31□□□□□ -0.44
SNHG3-201ENST00000413987 CARD11Q9BXL7 1154 aa12.31□□□□□ -0.44
SNHG3-201ENST00000413987 C3P01024 1663 aa12.3□□□□□ -0.44
SNHG3-201ENST00000413987 STAG3Q9UJ98 1225 aa12.3□□□□□ -0.44
SNHG3-201ENST00000413987 RALGAPBQ86X10 1494 aa12.3□□□□□ -0.44
SNHG3-201ENST00000413987 MARCH6O60337 910 aa12.3□□□□□ -0.44
SNHG3-201ENST00000413987 TRPM1Q7Z4N2 1603 aa12.3□□□□□ -0.44
SNHG3-201ENST00000413987 RIMS1Q86UR5 1692 aaKnown RBP12.3□□□□□ -0.44
SNHG3-201ENST00000413987 TMEM131LA2VDJ0 1609 aa12.29□□□□□ -0.44
SNHG3-201ENST00000413987 SLC52A1Q9NWF4 448 aa12.29□□□□□ -0.44
SNHG3-201ENST00000413987 CFAP70Q5T0N1 1121 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms