RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 C1orf141Q5JVX7 400 aa10.95□□□□□ -0.66
SYNE1-211ENST00000413186 CCDC146Q8IYE0 955 aa10.95□□□□□ -0.66
SYNE1-211ENST00000413186 ARXQ96QS3 562 aa10.95□□□□□ -0.66
SYNE1-211ENST00000413186 MSH6P52701 1360 aa10.94□□□□□ -0.66
SYNE1-211ENST00000413186 TRPM2O94759 1503 aa10.94□□□□□ -0.66
SYNE1-211ENST00000413186 CROCC2H7BZ55 1655 aa10.94□□□□□ -0.66
SYNE1-211ENST00000413186 TET3O43151 1660 aa10.94□□□□□ -0.66
SYNE1-211ENST00000413186 PPP2R1AP30153 589 aa10.94□□□□□ -0.66
SYNE1-211ENST00000413186 NUTM2GQ5VZR2 741 aa10.94□□□□□ -0.66
SYNE1-211ENST00000413186 IPO8O15397 1037 aaKnown RBP10.94□□□□□ -0.66
SYNE1-211ENST00000413186 ERVK-7P63135 1459 aa10.94□□□□□ -0.66
SYNE1-211ENST00000413186 CFAP65Q6ZU64 1925 aaKnown RBP10.94□□□□□ -0.66
SYNE1-211ENST00000413186 HSPA2P54652 639 aa10.93□□□□□ -0.66
SYNE1-211ENST00000413186 KCNH5Q8NCM2 988 aa10.93□□□□□ -0.66
SYNE1-211ENST00000413186 NSD3Q9BZ95 1437 aa10.93□□□□□ -0.66
SYNE1-211ENST00000413186 YTHDC2Q9H6S0 1430 aaKnown RBP10.93□□□□□ -0.66
SYNE1-211ENST00000413186 NCKAP5LQ9HCH0 1330 aa10.93□□□□□ -0.66
SYNE1-211ENST00000413186 RAPGEF4Q8WZA2 1011 aa10.93□□□□□ -0.66
SYNE1-211ENST00000413186 MEX3CQ5U5Q3 659 aaKnown RBP10.93□□□□□ -0.66
SYNE1-211ENST00000413186 FRAT1Q92837 279 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-211ENST00000413186 SUPT16HQ9Y5B9 1047 aaKnown RBP10.93□□□□□ -0.66
SYNE1-211ENST00000413186 RUNDC1Q96C34 613 aa10.92□□□□□ -0.66
SYNE1-211ENST00000413186 EFCAB6Q5THR3 1501 aa10.92□□□□□ -0.66
SYNE1-211ENST00000413186 IQGAP3Q86VI3 1631 aa10.92□□□□□ -0.66
SYNE1-211ENST00000413186 SMG6Q86US8 1419 aaKnown RBP10.92□□□□□ -0.66
SYNE1-211ENST00000413186 KCNA6P17658 529 aa10.91□□□□□ -0.66
SYNE1-211ENST00000413186 NSD2O96028 1365 aa10.91□□□□□ -0.66
SYNE1-211ENST00000413186 UNC13BO14795 1591 aa10.91□□□□□ -0.66
SYNE1-211ENST00000413186 C19orf44Q9H6X5 657 aa10.91□□□□□ -0.66
SYNE1-211ENST00000413186 STK31Q9BXU1 1019 aa10.91□□□□□ -0.66
SYNE1-211ENST00000413186 NLRP2Q9NX02 1062 aa10.91□□□□□ -0.66
SYNE1-211ENST00000413186 PPP4R2Q9NY27 417 aa10.91□□□□□ -0.66
SYNE1-211ENST00000413186 INO80Q9ULG1 1556 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-211ENST00000413186 TEFQ10587 303 aa10.9□□□□□ -0.66
SYNE1-211ENST00000413186 AGLP35573 1532 aa10.9□□□□□ -0.66
SYNE1-211ENST00000413186 SIRT1Q96EB6 747 aa10.9□□□□□ -0.66
SYNE1-211ENST00000413186 DIP2CQ9Y2E4 1556 aa10.9□□□□□ -0.67
SYNE1-211ENST00000413186 APAF1O14727 1248 aa10.89□□□□□ -0.67
SYNE1-211ENST00000413186 KDM5CP41229 1560 aa10.89□□□□□ -0.67
SYNE1-211ENST00000413186 E9PSI1 815 aa10.89□□□□□ -0.67
SYNE1-211ENST00000413186 PRDM15P57071 1507 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-211ENST00000413186 SPATA31E1Q6ZUB1 1445 aa10.89□□□□□ -0.67
SYNE1-211ENST00000413186 C11orf95C9JLR9 678 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-211ENST00000413186 FOXO3O43524 673 aa10.89□□□□□ -0.67
SYNE1-211ENST00000413186 CALRP27797 417 aaKnown RBP10.89□□□□□ -0.67
SYNE1-211ENST00000413186 RCAN3Q9UKA8 241 aa10.89□□□□□ -0.67
SYNE1-211ENST00000413186 ZBED9Q6R2W3 1325 aa10.88□□□□□ -0.67
SYNE1-211ENST00000413186 UGGT1Q9NYU2 1555 aa10.88□□□□□ -0.67
SYNE1-211ENST00000413186 DISP3Q9P2K9 1392 aa10.88□□□□□ -0.67
SYNE1-211ENST00000413186 PRDM11Q9NQV5 511 aa10.88□□□□□ -0.67
SYNE1-211ENST00000413186 ABCC11Q96J66 1382 aa10.88□□□□□ -0.67
SYNE1-211ENST00000413186 TOM1O60784 492 aa10.88□□□□□ -0.67
SYNE1-211ENST00000413186 IRX6P78412 446 aaPredicted RBP10.88□□□□□ -0.67
SYNE1-211ENST00000413186 ANP32BQ92688 251 aaKnown RBP10.88□□□□□ -0.67
SYNE1-211ENST00000413186 PLEKHG1Q9ULL1 1385 aa10.88□□□□□ -0.67
SYNE1-211ENST00000413186 RIPK4P57078 832 aa10.87□□□□□ -0.67
SYNE1-211ENST00000413186 RRP7AQ9Y3A4 280 aaKnown RBP10.87□□□□□ -0.67
SYNE1-211ENST00000413186 TTC21AQ8NDW8 1320 aa10.87□□□□□ -0.67
SYNE1-211ENST00000413186 MYOM2P54296 1465 aa10.87□□□□□ -0.67
SYNE1-211ENST00000413186 LMTK2Q8IWU2 1503 aa10.87□□□□□ -0.67
SYNE1-211ENST00000413186 NPHP3Q7Z494 1330 aa10.87□□□□□ -0.67
SYNE1-211ENST00000413186 LTKP29376 864 aa10.87□□□□□ -0.67
SYNE1-211ENST00000413186 GAS2L2Q8NHY3 880 aa10.87□□□□□ -0.67
SYNE1-211ENST00000413186 RBM33Q96EV2 1170 aaKnown RBP10.87□□□□□ -0.67
SYNE1-211ENST00000413186 TESK2Q96S53 571 aa10.87□□□□□ -0.67
SYNE1-211ENST00000413186 ACEP12821 1306 aa10.87□□□□□ -0.67
SYNE1-211ENST00000413186 PIP4K2BP78356 416 aa10.87□□□□□ -0.67
SYNE1-211ENST00000413186 KRT28Q7Z3Y7 464 aa10.87□□□□□ -0.67
SYNE1-211ENST00000413186 ANKRD36BQ8N2N9 1353 aa10.86□□□□□ -0.67
SYNE1-211ENST00000413186 ARHGEF40Q8TER5 1519 aa10.86□□□□□ -0.67
SYNE1-211ENST00000413186 HDAC5Q9UQL6 1122 aa10.86□□□□□ -0.67
SYNE1-211ENST00000413186 KIF1BO60333 1816 aa10.86□□□□□ -0.67
SYNE1-211ENST00000413186 PLEKHO1Q53GL0 409 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-211ENST00000413186 UPF2Q9HAU5 1272 aaKnown RBP10.86□□□□□ -0.67
SYNE1-211ENST00000413186 HMOX1P09601 288 aa10.85□□□□□ -0.67
SYNE1-211ENST00000413186 XPCQ01831 940 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-211ENST00000413186 NPHP1O15259 732 aa10.85□□□□□ -0.67
SYNE1-211ENST00000413186 ZMYM4Q5VZL5 1548 aa10.85□□□□□ -0.67
SYNE1-211ENST00000413186 GNAI1P63096 354 aa10.84□□□□□ -0.67
SYNE1-211ENST00000413186 ADAMTS8Q9UP79 889 aa10.84□□□□□ -0.67
SYNE1-211ENST00000413186 PLA2R1Q13018 1463 aa10.84□□□□□ -0.67
SYNE1-211ENST00000413186 MAP3K4Q9Y6R4 1608 aa10.84□□□□□ -0.67
SYNE1-211ENST00000413186 NME9Q86XW9 330 aa10.84□□□□□ -0.67
SYNE1-211ENST00000413186 TTC5Q8N0Z6 440 aa10.84□□□□□ -0.67
SYNE1-211ENST00000413186 SMC4Q9NTJ3 1288 aa10.84□□□□□ -0.67
SYNE1-211ENST00000413186 PPIP5K1Q6PFW1 1433 aa10.84□□□□□ -0.67
SYNE1-211ENST00000413186 TATP17735 454 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-211ENST00000413186 KIDINS220Q9ULH0 1771 aa10.84□□□□□ -0.67
SYNE1-211ENST00000413186 ZFYVE9O95405 1425 aa10.83□□□□□ -0.67
SYNE1-211ENST00000413186 ABCA6Q8N139 1617 aa10.83□□□□□ -0.68
SYNE1-211ENST00000413186 PRKAR2BP31323 418 aa10.83□□□□□ -0.68
SYNE1-211ENST00000413186 NPHP4O75161 1426 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-211ENST00000413186 PIK3R4Q99570 1358 aa10.83□□□□□ -0.68
SYNE1-211ENST00000413186 SBNO2Q9Y2G9 1366 aa10.82□□□□□ -0.68
SYNE1-211ENST00000413186 A2ML1A8K2U0 1454 aa10.82□□□□□ -0.68
SYNE1-211ENST00000413186 FCHSD2O94868 740 aa10.82□□□□□ -0.68
SYNE1-211ENST00000413186 TOM1L2Q6ZVM7 507 aa10.82□□□□□ -0.68
SYNE1-211ENST00000413186 TCP11L2Q8N4U5 519 aa10.82□□□□□ -0.68
SYNE1-211ENST00000413186 TTC21BQ7Z4L5 1316 aa10.82□□□□□ -0.68
SYNE1-211ENST00000413186 SULT6B1Q6IMI4 303 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms