RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 NPHP4O75161 1426 aaPredicted RBP9.22□□□□□ -0.93
VPS41-204ENST00000413141 ANKLE2Q86XL3 938 aa9.21□□□□□ -0.94
VPS41-204ENST00000413141 MIER1Q8N108 512 aa9.21□□□□□ -0.94
VPS41-204ENST00000413141 PRAM1Q96QH2 718 aa9.21□□□□□ -0.94
VPS41-204ENST00000413141 PIK3R4Q99570 1358 aa9.21□□□□□ -0.94
VPS41-204ENST00000413141 PLEKHH1Q9ULM0 1364 aa9.21□□□□□ -0.94
VPS41-204ENST00000413141 SLC26A8Q96RN1 970 aa9.2□□□□□ -0.94
VPS41-204ENST00000413141 TBX22Q9Y458 520 aa9.2□□□□□ -0.94
VPS41-204ENST00000413141 ROBO2Q9HCK4 1378 aa9.2□□□□□ -0.94
VPS41-204ENST00000413141 NWD1Q149M9 1564 aa9.2□□□□□ -0.94
VPS41-204ENST00000413141 NCBP3Q53F19 620 aaKnown RBP9.19□□□□□ -0.94
VPS41-204ENST00000413141 POGKQ9P215 609 aa9.19□□□□□ -0.94
VPS41-204ENST00000413141 EVC2Q86UK5 1308 aa9.19□□□□□ -0.94
VPS41-204ENST00000413141 CHD2O14647 1828 aaKnown RBP9.19□□□□□ -0.94
VPS41-204ENST00000413141 SAFB2Q14151 953 aaKnown RBP eCLIP9.18□□□□□ -0.94
VPS41-204ENST00000413141 SIRT1Q96EB6 747 aa9.18□□□□□ -0.94
VPS41-204ENST00000413141 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.18□□□□□ -0.94
VPS41-204ENST00000413141 MINK1Q8N4C8 1332 aaPredicted RBP9.17□□□□□ -0.94
VPS41-204ENST00000413141 ANP32CO43423 234 aa9.17□□□□□ -0.94
VPS41-204ENST00000413141 WAPLQ7Z5K2 1190 aa9.17□□□□□ -0.94
VPS41-204ENST00000413141 PUS7Q96PZ0 661 aaKnown RBP9.17□□□□□ -0.94
VPS41-204ENST00000413141 NINLQ9Y2I6 1382 aa9.16□□□□□ -0.94
VPS41-204ENST00000413141 NCKAP5LQ9HCH0 1330 aa9.16□□□□□ -0.94
VPS41-204ENST00000413141 TOPAZ1Q8N9V7 1692 aa9.16□□□□□ -0.94
VPS41-204ENST00000413141 USP32Q8NFA0 1604 aa9.16□□□□□ -0.94
VPS41-204ENST00000413141 ATAD2Q6PL18 1390 aa9.15□□□□□ -0.94
VPS41-204ENST00000413141 STRCQ7RTU9 1775 aa9.15□□□□□ -0.94
VPS41-204ENST00000413141 NALCNQ8IZF0 1738 aa9.15□□□□□ -0.94
VPS41-204ENST00000413141 DCAF8L1A6NGE4 600 aa9.15□□□□□ -0.94
VPS41-204ENST00000413141 AMOTL2Q9Y2J4 779 aa9.15□□□□□ -0.94
VPS41-204ENST00000413141 NKTRP30414 1462 aaKnown RBP9.15□□□□□ -0.95
VPS41-204ENST00000413141 ATP7BP35670 1465 aa9.15□□□□□ -0.95
VPS41-204ENST00000413141 PANK3Q9H999 370 aa9.14□□□□□ -0.95
VPS41-204ENST00000413141 CABP2Q9NPB3 220 aa9.14□□□□□ -0.95
VPS41-204ENST00000413141 CDC42BPGQ6DT37 1551 aa9.14□□□□□ -0.95
VPS41-204ENST00000413141 ANKRD36BQ8N2N9 1353 aa9.13□□□□□ -0.95
VPS41-204ENST00000413141 PER1O15534 1290 aaPredicted RBP9.13□□□□□ -0.95
VPS41-204ENST00000413141 KCNA6P17658 529 aa9.13□□□□□ -0.95
VPS41-204ENST00000413141 HSPA2P54652 639 aa9.13□□□□□ -0.95
VPS41-204ENST00000413141 SRPK2P78362 688 aaKnown RBP9.13□□□□□ -0.95
VPS41-204ENST00000413141 PRKRIP1Q9H875 184 aaPredicted RBP9.13□□□□□ -0.95
VPS41-204ENST00000413141 CD163L1Q9NR16 1453 aa9.13□□□□□ -0.95
VPS41-204ENST00000413141 KTN1Q86UP2 1357 aaKnown RBP9.12□□□□□ -0.95
VPS41-204ENST00000413141 FMN2Q9NZ56 1722 aa9.12□□□□□ -0.95
VPS41-204ENST00000413141 CCER2I3L3R5 266 aa9.12□□□□□ -0.95
VPS41-204ENST00000413141 WASLO00401 505 aaPredicted RBP9.12□□□□□ -0.95
VPS41-204ENST00000413141 CDK19Q9BWU1 502 aa9.12□□□□□ -0.95
VPS41-204ENST00000413141 NSD3Q9BZ95 1437 aa9.12□□□□□ -0.95
VPS41-204ENST00000413141 STRCP1A6NGW2 1772 aa9.12□□□□□ -0.95
VPS41-204ENST00000413141 PARD3Q8TEW0 1356 aa9.12□□□□□ -0.95
VPS41-204ENST00000413141 ITSN1Q15811 1721 aa9.11□□□□□ -0.95
VPS41-204ENST00000413141 ADGRL3Q9HAR2 1447 aa9.11□□□□□ -0.95
VPS41-204ENST00000413141 A0A1W2PP64 1363 aa9.11□□□□□ -0.95
VPS41-204ENST00000413141 NPC1L1Q9UHC9 1359 aa9.11□□□□□ -0.95
VPS41-204ENST00000413141 TMC1Q8TDI8 760 aa9.1□□□□□ -0.95
VPS41-204ENST00000413141 SLC12A5Q9H2X9 1139 aa9.1□□□□□ -0.95
VPS41-204ENST00000413141 PPIP5K1Q6PFW1 1433 aa9.1□□□□□ -0.95
VPS41-204ENST00000413141 MON2Q7Z3U7 1717 aa9.1□□□□□ -0.95
VPS41-204ENST00000413141 AKAP12Q02952 1782 aa9.09□□□□□ -0.95
VPS41-204ENST00000413141 NRKQ7Z2Y5 1582 aa9.09□□□□□ -0.95
VPS41-204ENST00000413141 ANKARQ7Z5J8 1434 aa9.09□□□□□ -0.95
VPS41-204ENST00000413141 AMER1Q5JTC6 1135 aaPredicted RBP9.09□□□□□ -0.95
VPS41-204ENST00000413141 CNKSR2Q8WXI2 1034 aa9.09□□□□□ -0.95
VPS41-204ENST00000413141 CARD14Q9BXL6 1004 aa9.09□□□□□ -0.95
VPS41-204ENST00000413141 KNSTRNQ9Y448 316 aa9.09□□□□□ -0.95
VPS41-204ENST00000413141 ANKRD26Q9UPS8 1709 aa9.08□□□□□ -0.96
VPS41-204ENST00000413141 PRR36Q9H6K5 1346 aa9.08□□□□□ -0.96
VPS41-204ENST00000413141 KIF20BQ96Q89 1820 aa9.08□□□□□ -0.96
VPS41-204ENST00000413141 RALBP1Q15311 655 aa9.08□□□□□ -0.96
VPS41-204ENST00000413141 MYBBP1AQ9BQG0 1328 aaKnown RBP9.07□□□□□ -0.96
VPS41-204ENST00000413141 CPSF1Q10570 1443 aaKnown RBP9.07□□□□□ -0.96
VPS41-204ENST00000413141 CNGB1Q14028 1251 aaPredicted RBP9.07□□□□□ -0.96
VPS41-204ENST00000413141 CC2D1BQ5T0F9 858 aaKnown RBP9.07□□□□□ -0.96
VPS41-204ENST00000413141 NUDT16Q96DE0 195 aaKnown RBP9.07□□□□□ -0.96
VPS41-204ENST00000413141 TERF2IPQ9NYB0 399 aa9.06□□□□□ -0.96
VPS41-204ENST00000413141 CABP1Q9NZU7 370 aa9.06□□□□□ -0.96
VPS41-204ENST00000413141 NSD2O96028 1365 aa9.06□□□□□ -0.96
VPS41-204ENST00000413141 RGPD8O14715 1765 aaPredicted RBP9.06□□□□□ -0.96
VPS41-204ENST00000413141 EDC4Q6P2E9 1401 aaKnown RBP9.05□□□□□ -0.96
VPS41-204ENST00000413141 HDGFL2Q7Z4V5 671 aaPredicted RBP9.05□□□□□ -0.96
VPS41-204ENST00000413141 CCDC61Q9Y6R9 512 aa9.05□□□□□ -0.96
VPS41-204ENST00000413141 XIRP1Q702N8 1843 aaKnown RBP9.05□□□□□ -0.96
VPS41-204ENST00000413141 DCCP43146 1447 aa9.05□□□□□ -0.96
VPS41-204ENST00000413141 NCOA3Q9Y6Q9 1424 aa9.05□□□□□ -0.96
VPS41-204ENST00000413141 CGNL1Q0VF96 1302 aa9.05□□□□□ -0.96
VPS41-204ENST00000413141 BRD4O60885 1362 aaPredicted RBP9.04□□□□□ -0.96
VPS41-204ENST00000413141 TMEM94Q12767 1356 aa9.04□□□□□ -0.96
VPS41-204ENST00000413141 CCDC184Q52MB2 194 aa9.04□□□□□ -0.96
VPS41-204ENST00000413141 POLR3AO14802 1390 aaPredicted RBP9.03□□□□□ -0.96
VPS41-204ENST00000413141 PLEKHG3A1L390 1219 aa9.03□□□□□ -0.96
VPS41-204ENST00000413141 NLRP13Q86W25 1043 aa9.03□□□□□ -0.96
VPS41-204ENST00000413141 RBM33Q96EV2 1170 aaKnown RBP9.03□□□□□ -0.96
VPS41-204ENST00000413141 RNF39Q9H2S5 420 aa9.03□□□□□ -0.96
VPS41-204ENST00000413141 MRS2Q9HD23 443 aa9.03□□□□□ -0.96
VPS41-204ENST00000413141 USP6P35125 1406 aa9.03□□□□□ -0.96
VPS41-204ENST00000413141 LRRC7Q96NW7 1537 aa9.02□□□□□ -0.97
VPS41-204ENST00000413141 KIF1AQ12756 1690 aa9.02□□□□□ -0.97
VPS41-204ENST00000413141 NUTM2FA1L443 756 aa9.02□□□□□ -0.97
VPS41-204ENST00000413141 PROSER2Q86WR7 435 aaPredicted RBP9.02□□□□□ -0.97
VPS41-204ENST00000413141 ZNF335Q9H4Z2 1342 aaPredicted RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 194.9 ms