RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 RGS17Q9UGC6 210 aaPredicted RBP27.92■■■□□ 2.06
SF3A1-202ENST00000411423 CDC42BPGQ6DT37 1551 aa27.91■■■□□ 2.06
SF3A1-202ENST00000411423 ORAI2Q96SN7 254 aa27.9■■■□□ 2.06
SF3A1-202ENST00000411423 PHF23Q9BUL5 403 aaPredicted RBP27.88■■■□□ 2.05
SF3A1-202ENST00000411423 LRP6O75581 1613 aa27.87■■■□□ 2.05
SF3A1-202ENST00000411423 SHPRHQ149N8 1683 aa27.86■■■□□ 2.05
SF3A1-202ENST00000411423 SIRT1Q96EB6 747 aa27.84■■■□□ 2.05
SF3A1-202ENST00000411423 DLC1Q96QB1 1528 aa27.82■■■□□ 2.04
SF3A1-202ENST00000411423 NUTM2FA1L443 756 aa27.81■■■□□ 2.04
SF3A1-202ENST00000411423 FMN2Q9NZ56 1722 aa27.81■■■□□ 2.04
SF3A1-202ENST00000411423 PRAM1Q96QH2 718 aa27.8■■■□□ 2.04
SF3A1-202ENST00000411423 SAFB2Q14151 953 aaKnown RBP eCLIP27.78■■■□□ 2.04
SF3A1-202ENST00000411423 SPATA31A6Q5VVP1 1343 aa27.77■■■□□ 2.04
SF3A1-202ENST00000411423 SOCS7O14512 581 aa27.77■■■□□ 2.04
SF3A1-202ENST00000411423 STAC3Q96MF2 364 aa27.77■■■□□ 2.04
SF3A1-202ENST00000411423 TRAK1Q9UPV9 953 aa27.77■■■□□ 2.04
SF3A1-202ENST00000411423 SIN3AQ96ST3 1273 aa27.76■■■□□ 2.03
SF3A1-202ENST00000411423 PNPLA6Q8IY17 1366 aa27.75■■■□□ 2.03
SF3A1-202ENST00000411423 SOS2Q07890 1332 aaPredicted RBP27.75■■■□□ 2.03
SF3A1-202ENST00000411423 ESCO1Q5FWF5 840 aa27.75■■■□□ 2.03
SF3A1-202ENST00000411423 POTEAQ6S8J7 498 aa27.74■■■□□ 2.03
SF3A1-202ENST00000411423 LRRC59Q96AG4 307 aaKnown RBP27.74■■■□□ 2.03
SF3A1-202ENST00000411423 RGPD8O14715 1765 aaPredicted RBP27.71■■■□□ 2.03
SF3A1-202ENST00000411423 PXDNQ92626 1479 aa27.7■■■□□ 2.03
SF3A1-202ENST00000411423 NUTM2BA6NNL0 878 aaPredicted RBP27.7■■■□□ 2.02
SF3A1-202ENST00000411423 NUTM2EB1AL46 878 aaPredicted RBP27.7■■■□□ 2.02
SF3A1-202ENST00000411423 NUTM2AQ8IVF1 878 aaPredicted RBP27.7■■■□□ 2.02
SF3A1-202ENST00000411423 ADGRB2O60241 1585 aa27.69■■■□□ 2.02
SF3A1-202ENST00000411423 POGKQ9P215 609 aa27.69■■■□□ 2.02
SF3A1-202ENST00000411423 ARHGEF28Q8N1W1 1705 aaKnown RBP27.69■■■□□ 2.02
SF3A1-202ENST00000411423 USP32Q8NFA0 1604 aa27.68■■■□□ 2.02
SF3A1-202ENST00000411423 FOXO3O43524 673 aa27.68■■■□□ 2.02
SF3A1-202ENST00000411423 XPCQ01831 940 aaPredicted RBP27.68■■■□□ 2.02
SF3A1-202ENST00000411423 KIAA1210Q9ULL0 1709 aa27.67■■■□□ 2.02
SF3A1-202ENST00000411423 TRIM26Q12899 539 aaPredicted RBP27.67■■■□□ 2.02
SF3A1-202ENST00000411423 NBPF1Q3BBV0 1214 aa27.67■■■□□ 2.02
SF3A1-202ENST00000411423 L3MBTL2Q969R5 705 aa27.67■■■□□ 2.02
SF3A1-202ENST00000411423 HIRIP3Q9BW71 556 aaPredicted RBP27.67■■■□□ 2.02
SF3A1-202ENST00000411423 NPHP3Q7Z494 1330 aa27.65■■■□□ 2.02
SF3A1-202ENST00000411423 MINK1Q8N4C8 1332 aaPredicted RBP27.65■■■□□ 2.02
SF3A1-202ENST00000411423 NEUROD1Q13562 356 aa27.63■■■□□ 2.01
SF3A1-202ENST00000411423 MEX3CQ5U5Q3 659 aaKnown RBP27.63■■■□□ 2.01
SF3A1-202ENST00000411423 KIF1AQ12756 1690 aa27.62■■■□□ 2.01
SF3A1-202ENST00000411423 COL22A1Q8NFW1 1626 aaPredicted RBP27.6■■■□□ 2.01
SF3A1-202ENST00000411423 PRR36Q9H6K5 1346 aa27.6■■■□□ 2.01
SF3A1-202ENST00000411423 PHF8Q9UPP1 1060 aa27.59■■■□□ 2.01
SF3A1-202ENST00000411423 ANKARQ7Z5J8 1434 aa27.58■■■□□ 2
SF3A1-202ENST00000411423 WASLO00401 505 aaPredicted RBP27.55■■■□□ 2
SF3A1-202ENST00000411423 TULP4Q9NRJ4 1543 aa27.55■■■□□ 2
SF3A1-202ENST00000411423 AFF2P51816 1311 aa27.53■■■□□ 2
SF3A1-202ENST00000411423 ADAMTS2O95450 1211 aa27.53■■■□□ 2
SF3A1-202ENST00000411423 KRT28Q7Z3Y7 464 aa27.53■■■□□ 2
SF3A1-202ENST00000411423 PMFBP1Q8TBY8 1022 aa27.53■■■□□ 2
SF3A1-202ENST00000411423 TRPM1Q7Z4N2 1603 aa27.52■■■□□ 2
SF3A1-202ENST00000411423 SPATA31A3Q5VYP0 1347 aa27.52■■■□□ 2
SF3A1-202ENST00000411423 C8orf37Q96NL8 207 aa27.52■■■□□ 2
SF3A1-202ENST00000411423 ZNF772Q68DY9 489 aaPredicted RBP27.49■■□□□ 1.99
SF3A1-202ENST00000411423 NBPF8Q3BBV2 869 aa27.48■■□□□ 1.99
SF3A1-202ENST00000411423 ATP7BP35670 1465 aa27.48■■□□□ 1.99
SF3A1-202ENST00000411423 TNS3Q68CZ2 1445 aa27.46■■□□□ 1.99
SF3A1-202ENST00000411423 TRPM3Q9HCF6 1732 aaPredicted RBP27.45■■□□□ 1.99
SF3A1-202ENST00000411423 EIF3AQ14152 1382 aaKnown RBP27.45■■□□□ 1.98
SF3A1-202ENST00000411423 CDK19Q9BWU1 502 aa27.44■■□□□ 1.98
SF3A1-202ENST00000411423 SBNO1A3KN83 1393 aa27.43■■□□□ 1.98
SF3A1-202ENST00000411423 PSME1Q06323 249 aa27.42■■□□□ 1.98
SF3A1-202ENST00000411423 NUDT16Q96DE0 195 aaKnown RBP27.42■■□□□ 1.98
SF3A1-202ENST00000411423 NGLY1Q96IV0 654 aa27.42■■□□□ 1.98
SF3A1-202ENST00000411423 MARF1Q9Y4F3 1742 aaKnown RBP27.41■■□□□ 1.98
SF3A1-202ENST00000411423 TOPAZ1Q8N9V7 1692 aa27.41■■□□□ 1.98
SF3A1-202ENST00000411423 QRICH2Q9H0J4 1663 aa27.41■■□□□ 1.98
SF3A1-202ENST00000411423 CENPJQ9HC77 1338 aaPredicted RBP27.41■■□□□ 1.98
SF3A1-202ENST00000411423 CABLES1Q8TDN4 633 aa27.39■■□□□ 1.98
SF3A1-202ENST00000411423 ROCK2O75116 1388 aaKnown RBP27.38■■□□□ 1.97
SF3A1-202ENST00000411423 FNBP4Q8N3X1 1017 aaPredicted RBP27.38■■□□□ 1.97
SF3A1-202ENST00000411423 ITSN1Q15811 1721 aa27.38■■□□□ 1.97
SF3A1-202ENST00000411423 ABCA3Q99758 1704 aa27.38■■□□□ 1.97
SF3A1-202ENST00000411423 ALS2Q96Q42 1657 aa27.37■■□□□ 1.97
SF3A1-202ENST00000411423 PLEKHG5O94827 1062 aa27.36■■□□□ 1.97
SF3A1-202ENST00000411423 RXRBP28702 533 aa27.36■■□□□ 1.97
SF3A1-202ENST00000411423 QTRT2Q9H974 415 aaKnown RBP27.36■■□□□ 1.97
SF3A1-202ENST00000411423 GPRASP1Q5JY77 1395 aa27.35■■□□□ 1.97
SF3A1-202ENST00000411423 BCL9LQ86UU0 1499 aa27.34■■□□□ 1.97
SF3A1-202ENST00000411423 LMOD2Q6P5Q4 547 aa27.34■■□□□ 1.97
SF3A1-202ENST00000411423 USP21Q9UK80 565 aa27.34■■□□□ 1.97
SF3A1-202ENST00000411423 TONSLQ96HA7 1378 aa27.34■■□□□ 1.97
SF3A1-202ENST00000411423 NGDNQ8NEJ9 315 aaKnown RBP27.33■■□□□ 1.97
SF3A1-202ENST00000411423 CABP2Q9NPB3 220 aa27.33■■□□□ 1.97
SF3A1-202ENST00000411423 ARHGEF10O15013 1369 aa27.32■■□□□ 1.96
SF3A1-202ENST00000411423 POLR3AO14802 1390 aaPredicted RBP27.31■■□□□ 1.96
SF3A1-202ENST00000411423 ATRNO75882 1429 aa27.31■■□□□ 1.96
SF3A1-202ENST00000411423 CCDC61Q9Y6R9 512 aa27.3■■□□□ 1.96
SF3A1-202ENST00000411423 RGS12O14924 1447 aa27.3■■□□□ 1.96
SF3A1-202ENST00000411423 CDK12Q9NYV4 1490 aaPredicted RBP27.3■■□□□ 1.96
SF3A1-202ENST00000411423 ACEP12821 1306 aa27.29■■□□□ 1.96
SF3A1-202ENST00000411423 SLIT2O94813 1529 aa27.29■■□□□ 1.96
SF3A1-202ENST00000411423 CRYBG1Q9Y4K1 1723 aa27.29■■□□□ 1.96
SF3A1-202ENST00000411423 RALGAPBQ86X10 1494 aa27.28■■□□□ 1.96
SF3A1-202ENST00000411423 PLEKHG3A1L390 1219 aa27.28■■□□□ 1.96
SF3A1-202ENST00000411423 RBM6P78332 1123 aaKnown RBP27.28■■□□□ 1.96
SF3A1-202ENST00000411423 SRPK2P78362 688 aaKnown RBP27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms