RNA–Protein interactions for RNA: ENST00000409909.7

LSM5-204, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM5, Length 740 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-204ENST00000409909 ORAI2Q96SN7 254 aa25.91■■□□□ 1.74
LSM5-204ENST00000409909 LAMC1P11047 1609 aa25.91■■□□□ 1.74
LSM5-204ENST00000409909 DHX57Q6P158 1386 aaKnown RBP25.9■■□□□ 1.74
LSM5-204ENST00000409909 SIRT1Q96EB6 747 aa25.89■■□□□ 1.74
LSM5-204ENST00000409909 CDC42BPGQ6DT37 1551 aa25.88■■□□□ 1.73
LSM5-204ENST00000409909 SHPRHQ149N8 1683 aa25.87■■□□□ 1.73
LSM5-204ENST00000409909 SPATA31A6Q5VVP1 1343 aa25.86■■□□□ 1.73
LSM5-204ENST00000409909 STAC3Q96MF2 364 aa25.85■■□□□ 1.73
LSM5-204ENST00000409909 LRP6O75581 1613 aa25.85■■□□□ 1.73
LSM5-204ENST00000409909 ADGRB1O14514 1584 aa25.84■■□□□ 1.73
LSM5-204ENST00000409909 LRRC59Q96AG4 307 aaKnown RBP25.83■■□□□ 1.73
LSM5-204ENST00000409909 PRAM1Q96QH2 718 aa25.81■■□□□ 1.72
LSM5-204ENST00000409909 NUTM2FA1L443 756 aa25.8■■□□□ 1.72
LSM5-204ENST00000409909 ESCO1Q5FWF5 840 aa25.8■■□□□ 1.72
LSM5-204ENST00000409909 POTEAQ6S8J7 498 aa25.8■■□□□ 1.72
LSM5-204ENST00000409909 SOS2Q07890 1332 aaPredicted RBP25.79■■□□□ 1.72
LSM5-204ENST00000409909 SAFB2Q14151 953 aaKnown RBP eCLIP25.78■■□□□ 1.72
LSM5-204ENST00000409909 DLC1Q96QB1 1528 aa25.78■■□□□ 1.72
LSM5-204ENST00000409909 NUTM2BA6NNL0 878 aaPredicted RBP25.77■■□□□ 1.72
LSM5-204ENST00000409909 NUTM2EB1AL46 878 aaPredicted RBP25.77■■□□□ 1.72
LSM5-204ENST00000409909 NUTM2AQ8IVF1 878 aaPredicted RBP25.77■■□□□ 1.72
LSM5-204ENST00000409909 TRAK1Q9UPV9 953 aa25.77■■□□□ 1.72
LSM5-204ENST00000409909 FMN2Q9NZ56 1722 aa25.77■■□□□ 1.72
LSM5-204ENST00000409909 PNPLA6Q8IY17 1366 aa25.76■■□□□ 1.71
LSM5-204ENST00000409909 MEX3CQ5U5Q3 659 aaKnown RBP25.74■■□□□ 1.71
LSM5-204ENST00000409909 POGKQ9P215 609 aa25.74■■□□□ 1.71
LSM5-204ENST00000409909 FOXO3O43524 673 aa25.73■■□□□ 1.71
LSM5-204ENST00000409909 NPHP3Q7Z494 1330 aa25.71■■□□□ 1.71
LSM5-204ENST00000409909 PXDNQ92626 1479 aa25.7■■□□□ 1.7
LSM5-204ENST00000409909 XPCQ01831 940 aaPredicted RBP25.69■■□□□ 1.7
LSM5-204ENST00000409909 SIN3AQ96ST3 1273 aa25.69■■□□□ 1.7
LSM5-204ENST00000409909 RGPD8O14715 1765 aaPredicted RBP25.69■■□□□ 1.7
LSM5-204ENST00000409909 HIRIP3Q9BW71 556 aaPredicted RBP25.67■■□□□ 1.7
LSM5-204ENST00000409909 MINK1Q8N4C8 1332 aaPredicted RBP25.65■■□□□ 1.7
LSM5-204ENST00000409909 ADGRB2O60241 1585 aa25.65■■□□□ 1.7
LSM5-204ENST00000409909 NBPF1Q3BBV0 1214 aa25.64■■□□□ 1.7
LSM5-204ENST00000409909 L3MBTL2Q969R5 705 aa25.64■■□□□ 1.7
LSM5-204ENST00000409909 KIAA1210Q9ULL0 1709 aa25.63■■□□□ 1.69
LSM5-204ENST00000409909 ZNF772Q68DY9 489 aaPredicted RBP25.63■■□□□ 1.69
LSM5-204ENST00000409909 PHF8Q9UPP1 1060 aa25.63■■□□□ 1.69
LSM5-204ENST00000409909 KIF1AQ12756 1690 aa25.63■■□□□ 1.69
LSM5-204ENST00000409909 ARHGEF28Q8N1W1 1705 aaKnown RBP25.63■■□□□ 1.69
LSM5-204ENST00000409909 TRIM26Q12899 539 aaPredicted RBP25.62■■□□□ 1.69
LSM5-204ENST00000409909 USP32Q8NFA0 1604 aa25.62■■□□□ 1.69
LSM5-204ENST00000409909 NEUROD1Q13562 356 aa25.61■■□□□ 1.69
LSM5-204ENST00000409909 COL22A1Q8NFW1 1626 aaPredicted RBP25.61■■□□□ 1.69
LSM5-204ENST00000409909 AFF2P51816 1311 aa25.61■■□□□ 1.69
LSM5-204ENST00000409909 ADAMTS2O95450 1211 aa25.6■■□□□ 1.69
LSM5-204ENST00000409909 KRT28Q7Z3Y7 464 aa25.6■■□□□ 1.69
LSM5-204ENST00000409909 C8orf37Q96NL8 207 aa25.6■■□□□ 1.69
LSM5-204ENST00000409909 ANKARQ7Z5J8 1434 aa25.6■■□□□ 1.69
LSM5-204ENST00000409909 WASLO00401 505 aaPredicted RBP25.58■■□□□ 1.69
LSM5-204ENST00000409909 PRR36Q9H6K5 1346 aa25.58■■□□□ 1.69
LSM5-204ENST00000409909 SPATA31A3Q5VYP0 1347 aa25.57■■□□□ 1.68
LSM5-204ENST00000409909 PMFBP1Q8TBY8 1022 aa25.56■■□□□ 1.68
LSM5-204ENST00000409909 NGLY1Q96IV0 654 aa25.54■■□□□ 1.68
LSM5-204ENST00000409909 TULP4Q9NRJ4 1543 aa25.53■■□□□ 1.68
LSM5-204ENST00000409909 PSME1Q06323 249 aa25.52■■□□□ 1.68
LSM5-204ENST00000409909 EIF3AQ14152 1382 aaKnown RBP25.52■■□□□ 1.68
LSM5-204ENST00000409909 RXRBP28702 533 aa25.49■■□□□ 1.67
LSM5-204ENST00000409909 CDK19Q9BWU1 502 aa25.49■■□□□ 1.67
LSM5-204ENST00000409909 TNS3Q68CZ2 1445 aa25.48■■□□□ 1.67
LSM5-204ENST00000409909 SBNO1A3KN83 1393 aa25.48■■□□□ 1.67
LSM5-204ENST00000409909 QTRT2Q9H974 415 aaKnown RBP25.48■■□□□ 1.67
LSM5-204ENST00000409909 FNBP4Q8N3X1 1017 aaPredicted RBP25.47■■□□□ 1.67
LSM5-204ENST00000409909 NUDT16Q96DE0 195 aaKnown RBP25.47■■□□□ 1.67
LSM5-204ENST00000409909 ATP7BP35670 1465 aa25.46■■□□□ 1.67
LSM5-204ENST00000409909 TRPM1Q7Z4N2 1603 aa25.45■■□□□ 1.67
LSM5-204ENST00000409909 MARF1Q9Y4F3 1742 aaKnown RBP25.44■■□□□ 1.66
LSM5-204ENST00000409909 USP21Q9UK80 565 aa25.44■■□□□ 1.66
LSM5-204ENST00000409909 CENPJQ9HC77 1338 aaPredicted RBP25.43■■□□□ 1.66
LSM5-204ENST00000409909 NBPF8Q3BBV2 869 aa25.43■■□□□ 1.66
LSM5-204ENST00000409909 LMOD2Q6P5Q4 547 aa25.43■■□□□ 1.66
LSM5-204ENST00000409909 CABLES1Q8TDN4 633 aa25.43■■□□□ 1.66
LSM5-204ENST00000409909 TRPM3Q9HCF6 1732 aaPredicted RBP25.43■■□□□ 1.66
LSM5-204ENST00000409909 NGDNQ8NEJ9 315 aaKnown RBP25.42■■□□□ 1.66
LSM5-204ENST00000409909 GPRASP1Q5JY77 1395 aa25.42■■□□□ 1.66
LSM5-204ENST00000409909 RBM6P78332 1123 aaKnown RBP25.41■■□□□ 1.66
LSM5-204ENST00000409909 ARHGEF10O15013 1369 aa25.41■■□□□ 1.66
LSM5-204ENST00000409909 PLEKHG5O94827 1062 aa25.4■■□□□ 1.66
LSM5-204ENST00000409909 ITSN1Q15811 1721 aa25.4■■□□□ 1.66
LSM5-204ENST00000409909 BCL9LQ86UU0 1499 aa25.4■■□□□ 1.66
LSM5-204ENST00000409909 CDK12Q9NYV4 1490 aaPredicted RBP25.4■■□□□ 1.66
LSM5-204ENST00000409909 ROCK2O75116 1388 aaKnown RBP25.38■■□□□ 1.65
LSM5-204ENST00000409909 ALS2Q96Q42 1657 aa25.37■■□□□ 1.65
LSM5-204ENST00000409909 QRICH2Q9H0J4 1663 aa25.37■■□□□ 1.65
LSM5-204ENST00000409909 TRPC5Q9UL62 973 aaPredicted RBP25.37■■□□□ 1.65
LSM5-204ENST00000409909 CCDC61Q9Y6R9 512 aa25.37■■□□□ 1.65
LSM5-204ENST00000409909 ATRNO75882 1429 aa25.37■■□□□ 1.65
LSM5-204ENST00000409909 TOPAZ1Q8N9V7 1692 aa25.36■■□□□ 1.65
LSM5-204ENST00000409909 ABCA3Q99758 1704 aa25.35■■□□□ 1.65
LSM5-204ENST00000409909 PLEKHG3A1L390 1219 aa25.35■■□□□ 1.65
LSM5-204ENST00000409909 HAP1P54257 671 aaPredicted RBP25.35■■□□□ 1.65
LSM5-204ENST00000409909 CABP2Q9NPB3 220 aa25.35■■□□□ 1.65
LSM5-204ENST00000409909 RGS12O14924 1447 aa25.35■■□□□ 1.65
LSM5-204ENST00000409909 SRPK2P78362 688 aaKnown RBP25.34■■□□□ 1.65
LSM5-204ENST00000409909 ACEP12821 1306 aa25.34■■□□□ 1.65
LSM5-204ENST00000409909 POLR3AO14802 1390 aaPredicted RBP25.33■■□□□ 1.65
LSM5-204ENST00000409909 TONSLQ96HA7 1378 aa25.33■■□□□ 1.65
LSM5-204ENST00000409909 SLIT2O94813 1529 aa25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms