RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 COL17A1Q9UMD9 1497 aaPredicted RBP6.21□□□□□ -1.41
SMAD4-202ENST00000398417 TPRNQ4KMQ1 711 aa6.21□□□□□ -1.42
SMAD4-202ENST00000398417 PRDM2Q13029 1718 aa6.21□□□□□ -1.42
SMAD4-202ENST00000398417 NGEFQ8N5V2 710 aa6.21□□□□□ -1.42
SMAD4-202ENST00000398417 SYCP2Q9BX26 1530 aa6.21□□□□□ -1.42
SMAD4-202ENST00000398417 MAGI2Q86UL8 1455 aa6.21□□□□□ -1.42
SMAD4-202ENST00000398417 PCDHB15Q9Y5E8 787 aa6.21□□□□□ -1.42
SMAD4-202ENST00000398417 CEP170Q5SW79 1584 aa6.21□□□□□ -1.42
SMAD4-202ENST00000398417 MVPQ14764 893 aaKnown RBP6.2□□□□□ -1.42
SMAD4-202ENST00000398417 TARBP1Q13395 1621 aaKnown RBP6.2□□□□□ -1.42
SMAD4-202ENST00000398417 WAPLQ7Z5K2 1190 aa6.2□□□□□ -1.42
SMAD4-202ENST00000398417 TXNDC2Q86VQ3 553 aa6.2□□□□□ -1.42
SMAD4-202ENST00000398417 RPGRIP1LQ68CZ1 1315 aa6.2□□□□□ -1.42
SMAD4-202ENST00000398417 IDI1Q13907 227 aa6.2□□□□□ -1.42
SMAD4-202ENST00000398417 ZRANB1Q9UGI0 708 aa6.2□□□□□ -1.42
SMAD4-202ENST00000398417 DDX19BQ9UMR2 479 aa6.2□□□□□ -1.42
SMAD4-202ENST00000398417 EMILIN1Q9Y6C2 1016 aa6.2□□□□□ -1.42
SMAD4-202ENST00000398417 ARHGEF12Q9NZN5 1544 aa6.2□□□□□ -1.42
SMAD4-202ENST00000398417 ANO8Q9HCE9 1232 aaPredicted RBP6.2□□□□□ -1.42
SMAD4-202ENST00000398417 TMPOP42166 694 aaKnown RBP6.19□□□□□ -1.42
SMAD4-202ENST00000398417 C22orf23Q9BZE7 217 aa6.19□□□□□ -1.42
SMAD4-202ENST00000398417 DNMT1P26358 1616 aaKnown RBP6.19□□□□□ -1.42
SMAD4-202ENST00000398417 TMEM57Q8N5G2 664 aa6.19□□□□□ -1.42
SMAD4-202ENST00000398417 FAM69CQ0P6D2 419 aa6.19□□□□□ -1.42
SMAD4-202ENST00000398417 NME9Q86XW9 330 aa6.19□□□□□ -1.42
SMAD4-202ENST00000398417 TRIM44Q96DX7 344 aaPredicted RBP6.19□□□□□ -1.42
SMAD4-202ENST00000398417 SLC4A10Q6U841 1118 aa6.18□□□□□ -1.42
SMAD4-202ENST00000398417 COG3Q96JB2 828 aa6.18□□□□□ -1.42
SMAD4-202ENST00000398417 GOLGA6L3A6NEY3 463 aa6.18□□□□□ -1.42
SMAD4-202ENST00000398417 SSH1Q8WYL5 1049 aa6.18□□□□□ -1.42
SMAD4-202ENST00000398417 KIF14Q15058 1648 aa6.18□□□□□ -1.42
SMAD4-202ENST00000398417 L1TD1Q5T7N2 865 aaKnown RBP6.18□□□□□ -1.42
SMAD4-202ENST00000398417 ADGRL1O94910 1474 aa6.18□□□□□ -1.42
SMAD4-202ENST00000398417 ZNF521Q96K83 1311 aa6.18□□□□□ -1.42
SMAD4-202ENST00000398417 DCTN1Q14203 1278 aa6.18□□□□□ -1.42
SMAD4-202ENST00000398417 TRMT2AQ8IZ69 625 aaKnown RBP6.18□□□□□ -1.42
SMAD4-202ENST00000398417 BLMP54132 1417 aaPredicted RBP6.17□□□□□ -1.42
SMAD4-202ENST00000398417 NOL8Q76FK4 1167 aaKnown RBP6.17□□□□□ -1.42
SMAD4-202ENST00000398417 POLR3AO14802 1390 aaPredicted RBP6.17□□□□□ -1.42
SMAD4-202ENST00000398417 FOXD4L5Q5VV16 416 aaPredicted RBP6.17□□□□□ -1.42
SMAD4-202ENST00000398417 FOXD4L4Q8WXT5 416 aaPredicted RBP6.17□□□□□ -1.42
SMAD4-202ENST00000398417 CHMP5Q9NZZ3 219 aa6.17□□□□□ -1.42
SMAD4-202ENST00000398417 RRS1Q15050 365 aaKnown RBP6.17□□□□□ -1.42
SMAD4-202ENST00000398417 LTV1Q96GA3 475 aaPredicted RBP6.17□□□□□ -1.42
SMAD4-202ENST00000398417 NECTIN2Q92692 538 aa6.17□□□□□ -1.42
SMAD4-202ENST00000398417 NCKAP5LQ9HCH0 1330 aa6.16□□□□□ -1.42
SMAD4-202ENST00000398417 FYB1O15117 783 aa6.16□□□□□ -1.42
SMAD4-202ENST00000398417 PIK3C2GO75747 1445 aa6.16□□□□□ -1.42
SMAD4-202ENST00000398417 TWISTNBQ3B726 338 aaPredicted RBP6.16□□□□□ -1.42
SMAD4-202ENST00000398417 ATF7IPQ6VMQ6 1270 aa6.16□□□□□ -1.42
SMAD4-202ENST00000398417 GNAI1P63096 354 aa6.16□□□□□ -1.42
SMAD4-202ENST00000398417 TBC1D2Q9BYX2 928 aa6.16□□□□□ -1.42
SMAD4-202ENST00000398417 A0A0G2JS52 829 aa6.16□□□□□ -1.42
SMAD4-202ENST00000398417 CHMP4BQ9H444 224 aaKnown RBP6.16□□□□□ -1.42
SMAD4-202ENST00000398417 NAP1L5Q96NT1 182 aaPredicted RBP6.16□□□□□ -1.42
SMAD4-202ENST00000398417 API5Q9BZZ5 524 aaKnown RBP6.16□□□□□ -1.42
SMAD4-202ENST00000398417 CD109Q6YHK3 1445 aa6.16□□□□□ -1.42
SMAD4-202ENST00000398417 FANCAO15360 1455 aa6.15□□□□□ -1.42
SMAD4-202ENST00000398417 NKTRP30414 1462 aaKnown RBP6.15□□□□□ -1.42
SMAD4-202ENST00000398417 TSPYL6Q8N831 410 aa6.15□□□□□ -1.42
SMAD4-202ENST00000398417 TRIM27P14373 513 aa6.15□□□□□ -1.42
SMAD4-202ENST00000398417 CALD1Q05682 793 aaKnown RBP6.15□□□□□ -1.42
SMAD4-202ENST00000398417 RTF1Q92541 710 aaKnown RBP6.15□□□□□ -1.42
SMAD4-202ENST00000398417 KAT6BQ8WYB5 2073 aa6.15□□□□□ -1.42
SMAD4-202ENST00000398417 EIF4G3O43432 1585 aaKnown RBP6.15□□□□□ -1.43
SMAD4-202ENST00000398417 FAM83GA6ND36 823 aa6.15□□□□□ -1.43
SMAD4-202ENST00000398417 NUTM2GQ5VZR2 741 aa6.15□□□□□ -1.43
SMAD4-202ENST00000398417 ABCA8O94911 1581 aa6.15□□□□□ -1.43
SMAD4-202ENST00000398417 SMARCA5O60264 1052 aaPredicted RBP6.14□□□□□ -1.43
SMAD4-202ENST00000398417 DUOX2Q9NRD8 1548 aa6.14□□□□□ -1.43
SMAD4-202ENST00000398417 HDGFP51858 240 aaKnown RBP6.14□□□□□ -1.43
SMAD4-202ENST00000398417 RTEL1-TNFRSF6BF6WH68 1400 aa6.14□□□□□ -1.43
SMAD4-202ENST00000398417 CHD1LQ86WJ1 897 aa6.14□□□□□ -1.43
SMAD4-202ENST00000398417 GOLGA6L22H0YM25 854 aa6.14□□□□□ -1.43
SMAD4-202ENST00000398417 LMOD3Q0VAK6 560 aa6.14□□□□□ -1.43
SMAD4-202ENST00000398417 NFE2L2Q16236 605 aa6.14□□□□□ -1.43
SMAD4-202ENST00000398417 WDR7Q9Y4E6 1490 aa6.14□□□□□ -1.43
SMAD4-202ENST00000398417 INSRP06213 1382 aa6.14□□□□□ -1.43
SMAD4-202ENST00000398417 FCHSD2O94868 740 aa6.14□□□□□ -1.43
SMAD4-202ENST00000398417 MIS18AQ9NYP9 233 aa6.14□□□□□ -1.43
SMAD4-202ENST00000398417 AAMPQ13685 434 aa6.13□□□□□ -1.43
SMAD4-202ENST00000398417 NGDNQ8NEJ9 315 aaKnown RBP6.13□□□□□ -1.43
SMAD4-202ENST00000398417 CASC1Q6TDU7 716 aa6.13□□□□□ -1.43
SMAD4-202ENST00000398417 SULT6B1Q6IMI4 303 aa6.13□□□□□ -1.43
SMAD4-202ENST00000398417 ATP10AO60312 1499 aa6.13□□□□□ -1.43
SMAD4-202ENST00000398417 NINLQ9Y2I6 1382 aa6.13□□□□□ -1.43
SMAD4-202ENST00000398417 MRPL50Q8N5N7 158 aaKnown RBP6.13□□□□□ -1.43
SMAD4-202ENST00000398417 CDC45O75419 566 aa6.13□□□□□ -1.43
SMAD4-202ENST00000398417 KRT24Q2M2I5 525 aa6.13□□□□□ -1.43
SMAD4-202ENST00000398417 TRIM35Q9UPQ4 493 aa6.13□□□□□ -1.43
SMAD4-202ENST00000398417 KIF16BQ96L93 1317 aa6.13□□□□□ -1.43
SMAD4-202ENST00000398417 NUDT16Q96DE0 195 aaKnown RBP6.13□□□□□ -1.43
SMAD4-202ENST00000398417 ASXL2Q76L83 1435 aa6.13□□□□□ -1.43
SMAD4-202ENST00000398417 AMPHP49418 695 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 MBIPQ9NS73 344 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 SLC52A1Q9NWF4 448 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 ERVK-7P63135 1459 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 TRAK2O60296 914 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 ANP32BQ92688 251 aaKnown RBP6.12□□□□□ -1.43
SMAD4-202ENST00000398417 GBP4Q96PP9 640 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms