RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 TMCO4Q5TGY1 634 aa8.54□□□□□ -1.04
TM9SF4-202ENST00000398022 KDM5AP29375 1690 aaKnown RBP8.53□□□□□ -1.04
TM9SF4-202ENST00000398022 NAIPQ13075 1403 aa8.53□□□□□ -1.04
TM9SF4-202ENST00000398022 EIF2AK4Q9P2K8 1649 aaKnown RBP8.53□□□□□ -1.04
TM9SF4-202ENST00000398022 ZNF830Q96NB3 372 aaPredicted RBP8.53□□□□□ -1.04
TM9SF4-202ENST00000398022 EHBP1L1Q8N3D4 1523 aa8.53□□□□□ -1.04
TM9SF4-202ENST00000398022 MFAP1P55081 439 aaKnown RBP8.53□□□□□ -1.04
TM9SF4-202ENST00000398022 AEBP1Q8IUX7 1158 aa8.53□□□□□ -1.04
TM9SF4-202ENST00000398022 SOX12O15370 315 aa8.52□□□□□ -1.05
TM9SF4-202ENST00000398022 ILDR2Q71H61 639 aa8.52□□□□□ -1.05
TM9SF4-202ENST00000398022 MSH5O43196 834 aa8.52□□□□□ -1.05
TM9SF4-202ENST00000398022 KIAA1107Q9UPP5 1409 aa8.52□□□□□ -1.05
TM9SF4-202ENST00000398022 ARHGEF5Q12774 1597 aa8.51□□□□□ -1.05
TM9SF4-202ENST00000398022 MED14O60244 1454 aa8.51□□□□□ -1.05
TM9SF4-202ENST00000398022 HSPA2P54652 639 aa8.51□□□□□ -1.05
TM9SF4-202ENST00000398022 CCDC125Q86Z20 511 aa8.51□□□□□ -1.05
TM9SF4-202ENST00000398022 IQGAP1P46940 1657 aa8.5□□□□□ -1.05
TM9SF4-202ENST00000398022 CENPJQ9HC77 1338 aaPredicted RBP8.5□□□□□ -1.05
TM9SF4-202ENST00000398022 HSPA5P11021 654 aaKnown RBP8.5□□□□□ -1.05
TM9SF4-202ENST00000398022 ADRA2BP18089 450 aa8.5□□□□□ -1.05
TM9SF4-202ENST00000398022 PIAS4Q8N2W9 510 aaPredicted RBP8.5□□□□□ -1.05
TM9SF4-202ENST00000398022 RRP7BPQ9NSQ0 103 aa8.5□□□□□ -1.05
TM9SF4-202ENST00000398022 APBB1O00213 710 aa8.5□□□□□ -1.05
TM9SF4-202ENST00000398022 SYNMO15061 1565 aa8.5□□□□□ -1.05
TM9SF4-202ENST00000398022 CERKQ8TCT0 537 aa8.5□□□□□ -1.05
TM9SF4-202ENST00000398022 CEP152O94986 1710 aa8.49□□□□□ -1.05
TM9SF4-202ENST00000398022 RGS3P49796 1198 aa8.49□□□□□ -1.05
TM9SF4-202ENST00000398022 CHIC2Q9UKJ5 165 aa8.49□□□□□ -1.05
TM9SF4-202ENST00000398022 RIPOR2Q9Y4F9 1068 aa8.49□□□□□ -1.05
TM9SF4-202ENST00000398022 MED1Q15648 1581 aaPredicted RBP8.49□□□□□ -1.05
TM9SF4-202ENST00000398022 KDM5DQ9BY66 1539 aa8.49□□□□□ -1.05
TM9SF4-202ENST00000398022 TTC36A6NLP5 189 aa8.49□□□□□ -1.05
TM9SF4-202ENST00000398022 CEP120Q8N960 986 aa8.49□□□□□ -1.05
TM9SF4-202ENST00000398022 TRIM44Q96DX7 344 aaPredicted RBP8.49□□□□□ -1.05
TM9SF4-202ENST00000398022 SGSM3Q96HU1 749 aa8.49□□□□□ -1.05
TM9SF4-202ENST00000398022 NBPF11Q86T75 865 aa8.48□□□□□ -1.05
TM9SF4-202ENST00000398022 PPP4R2Q9NY27 417 aa8.48□□□□□ -1.05
TM9SF4-202ENST00000398022 NBPF20Q3BBV1 942 aa8.48□□□□□ -1.05
TM9SF4-202ENST00000398022 FOXD4L6Q3SYB3 417 aaPredicted RBP8.48□□□□□ -1.05
TM9SF4-202ENST00000398022 SPTY2D1Q68D10 685 aaPredicted RBP8.48□□□□□ -1.05
TM9SF4-202ENST00000398022 FOXD4L3Q6VB84 417 aaPredicted RBP8.48□□□□□ -1.05
TM9SF4-202ENST00000398022 UHRF1BP1Q6BDS2 1440 aa8.48□□□□□ -1.05
TM9SF4-202ENST00000398022 NBPF1Q3BBV0 1214 aa8.47□□□□□ -1.05
TM9SF4-202ENST00000398022 MYCNP04198 464 aaPredicted RBP8.47□□□□□ -1.05
TM9SF4-202ENST00000398022 WASHC2AQ641Q2 1341 aa8.47□□□□□ -1.05
TM9SF4-202ENST00000398022 CNTLNQ9NXG0 1405 aa8.47□□□□□ -1.05
TM9SF4-202ENST00000398022 MRS2Q9HD23 443 aa8.46□□□□□ -1.05
TM9SF4-202ENST00000398022 MPHOSPH9Q99550 1183 aa8.46□□□□□ -1.05
TM9SF4-202ENST00000398022 SLC52A1Q9NWF4 448 aa8.46□□□□□ -1.05
TM9SF4-202ENST00000398022 NOL8Q76FK4 1167 aaKnown RBP8.46□□□□□ -1.06
TM9SF4-202ENST00000398022 AFAP1Q8N556 730 aa8.46□□□□□ -1.06
TM9SF4-202ENST00000398022 MIA2Q96PC5 1412 aa8.45□□□□□ -1.06
TM9SF4-202ENST00000398022 RTEL1-TNFRSF6BF6WH68 1400 aa8.45□□□□□ -1.06
TM9SF4-202ENST00000398022 NEUROD2Q15784 382 aa8.45□□□□□ -1.06
TM9SF4-202ENST00000398022 CC2D1BQ5T0F9 858 aaKnown RBP8.45□□□□□ -1.06
TM9SF4-202ENST00000398022 PZPP20742 1482 aa8.45□□□□□ -1.06
TM9SF4-202ENST00000398022 PRDM15P57071 1507 aaPredicted RBP8.45□□□□□ -1.06
TM9SF4-202ENST00000398022 HSP90AA1P07900 732 aaKnown RBP8.45□□□□□ -1.06
TM9SF4-202ENST00000398022 CEBPAP49715 358 aaPredicted RBP8.45□□□□□ -1.06
TM9SF4-202ENST00000398022 CDCA8Q53HL2 280 aa8.45□□□□□ -1.06
TM9SF4-202ENST00000398022 CASC1Q6TDU7 716 aa8.45□□□□□ -1.06
TM9SF4-202ENST00000398022 A2ML1A8K2U0 1454 aa8.44□□□□□ -1.06
TM9SF4-202ENST00000398022 A2MP01023 1474 aa8.44□□□□□ -1.06
TM9SF4-202ENST00000398022 TMEM51Q9NW97 253 aa8.44□□□□□ -1.06
TM9SF4-202ENST00000398022 SH3BP1Q9Y3L3 701 aa8.44□□□□□ -1.06
TM9SF4-202ENST00000398022 BRD1O95696 1058 aa8.44□□□□□ -1.06
TM9SF4-202ENST00000398022 PSEN1P49768 467 aa8.44□□□□□ -1.06
TM9SF4-202ENST00000398022 L3MBTL2Q969R5 705 aa8.44□□□□□ -1.06
TM9SF4-202ENST00000398022 TET3O43151 1660 aa8.44□□□□□ -1.06
TM9SF4-202ENST00000398022 SPRYD3Q8NCJ5 442 aa8.44□□□□□ -1.06
TM9SF4-202ENST00000398022 PRKRIP1Q9H875 184 aaPredicted RBP8.44□□□□□ -1.06
TM9SF4-202ENST00000398022 GCC2Q8IWJ2 1684 aa8.43□□□□□ -1.06
TM9SF4-202ENST00000398022 RINLQ6ZS11 566 aa8.43□□□□□ -1.06
TM9SF4-202ENST00000398022 TSHZ1Q6ZSZ6 1077 aa8.43□□□□□ -1.06
TM9SF4-202ENST00000398022 ZBED9Q6R2W3 1325 aa8.43□□□□□ -1.06
TM9SF4-202ENST00000398022 CCDC7Q96M83 1385 aa8.43□□□□□ -1.06
TM9SF4-202ENST00000398022 GZF1Q9H116 711 aaPredicted RBP8.43□□□□□ -1.06
TM9SF4-202ENST00000398022 NWD1Q149M9 1564 aa8.43□□□□□ -1.06
TM9SF4-202ENST00000398022 UGGT1Q9NYU2 1555 aa8.43□□□□□ -1.06
TM9SF4-202ENST00000398022 ABCC3O15438 1527 aa8.43□□□□□ -1.06
TM9SF4-202ENST00000398022 MYO5BQ9ULV0 1848 aa8.43□□□□□ -1.06
TM9SF4-202ENST00000398022 CPS1P31327 1500 aa8.42□□□□□ -1.06
TM9SF4-202ENST00000398022 ZMYM3Q14202 1370 aa8.42□□□□□ -1.06
TM9SF4-202ENST00000398022 PIK3C2BO00750 1634 aa8.42□□□□□ -1.06
TM9SF4-202ENST00000398022 SLIT1O75093 1534 aa8.42□□□□□ -1.06
TM9SF4-202ENST00000398022 EGFL6Q8IUX8 553 aa8.41□□□□□ -1.06
TM9SF4-202ENST00000398022 ARHGAP23Q9P227 1491 aa8.41□□□□□ -1.06
TM9SF4-202ENST00000398022 FAM43AQ8N2R8 423 aa8.41□□□□□ -1.06
TM9SF4-202ENST00000398022 MYH16Q9H6N6 1097 aa8.41□□□□□ -1.06
TM9SF4-202ENST00000398022 CARD10Q9BWT7 1032 aa8.4□□□□□ -1.06
TM9SF4-202ENST00000398022 ROCK1Q13464 1354 aa8.4□□□□□ -1.06
TM9SF4-202ENST00000398022 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.39□□□□□ -1.07
TM9SF4-202ENST00000398022 PLEKHH2Q8IVE3 1493 aa8.39□□□□□ -1.07
TM9SF4-202ENST00000398022 PKD2Q13563 968 aa8.39□□□□□ -1.07
TM9SF4-202ENST00000398022 RPRD2Q5VT52 1461 aaKnown RBP8.38□□□□□ -1.07
TM9SF4-202ENST00000398022 EFCAB2Q5VUJ9 269 aa8.38□□□□□ -1.07
TM9SF4-202ENST00000398022 TERF2IPQ9NYB0 399 aa8.38□□□□□ -1.07
TM9SF4-202ENST00000398022 CHD2O14647 1828 aaKnown RBP8.38□□□□□ -1.07
TM9SF4-202ENST00000398022 ANKRD30BQ9BXX2 1392 aa8.38□□□□□ -1.07
TM9SF4-202ENST00000398022 MAPK8IP2Q13387 824 aaPredicted RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms