RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 USP21Q9UK80 565 aa24.48■■□□□ 1.51
CUX2-202ENST00000397643 CDC42BPGQ6DT37 1551 aa24.47■■□□□ 1.51
CUX2-202ENST00000397643 ATAD2Q6PL18 1390 aa24.47■■□□□ 1.51
CUX2-202ENST00000397643 TRPC5Q9UL62 973 aaPredicted RBP24.46■■□□□ 1.51
CUX2-202ENST00000397643 PXDNQ92626 1479 aa24.45■■□□□ 1.51
CUX2-202ENST00000397643 RPGRIP1LQ68CZ1 1315 aa24.45■■□□□ 1.5
CUX2-202ENST00000397643 EP400Q96L91 3159 aa24.44■■□□□ 1.5
CUX2-202ENST00000397643 BCL9LQ86UU0 1499 aa24.41■■□□□ 1.5
CUX2-202ENST00000397643 MARF1Q9Y4F3 1742 aaKnown RBP24.4■■□□□ 1.5
CUX2-202ENST00000397643 NPHP3Q7Z494 1330 aa24.39■■□□□ 1.5
CUX2-202ENST00000397643 TECPR2O15040 1411 aa24.37■■□□□ 1.49
CUX2-202ENST00000397643 ESCO1Q5FWF5 840 aa24.36■■□□□ 1.49
CUX2-202ENST00000397643 SLC4A1APQ9BWU0 796 aaKnown RBP24.35■■□□□ 1.49
CUX2-202ENST00000397643 XPCQ01831 940 aaPredicted RBP24.34■■□□□ 1.49
CUX2-202ENST00000397643 ADGRF5Q8IZF2 1346 aa24.34■■□□□ 1.49
CUX2-202ENST00000397643 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.33■■□□□ 1.49
CUX2-202ENST00000397643 FOXO3O43524 673 aa24.33■■□□□ 1.49
CUX2-202ENST00000397643 KNDC1Q76NI1 1749 aa24.32■■□□□ 1.48
CUX2-202ENST00000397643 IFT172Q9UG01 1749 aa24.32■■□□□ 1.48
CUX2-202ENST00000397643 SPATA31E1Q6ZUB1 1445 aa24.31■■□□□ 1.48
CUX2-202ENST00000397643 LRPPRCP42704 1394 aaKnown RBP24.3■■□□□ 1.48
CUX2-202ENST00000397643 FOXD1Q16676 465 aa24.3■■□□□ 1.48
CUX2-202ENST00000397643 WAPLQ7Z5K2 1190 aa24.3■■□□□ 1.48
CUX2-202ENST00000397643 PLEKHH1Q9ULM0 1364 aa24.29■■□□□ 1.48
CUX2-202ENST00000397643 GLI3P10071 1580 aa24.29■■□□□ 1.48
CUX2-202ENST00000397643 GJD4Q96KN9 370 aaPredicted RBP24.29■■□□□ 1.48
CUX2-202ENST00000397643 FMN2Q9NZ56 1722 aa24.29■■□□□ 1.48
CUX2-202ENST00000397643 SLIT2O94813 1529 aa24.29■■□□□ 1.48
CUX2-202ENST00000397643 ABCC11Q96J66 1382 aa24.28■■□□□ 1.48
CUX2-202ENST00000397643 NUTM2FA1L443 756 aa24.27■■□□□ 1.48
CUX2-202ENST00000397643 STK26Q9P289 416 aa24.26■■□□□ 1.47
CUX2-202ENST00000397643 ZRANB1Q9UGI0 708 aa24.26■■□□□ 1.47
CUX2-202ENST00000397643 KIF1AQ12756 1690 aa24.26■■□□□ 1.47
CUX2-202ENST00000397643 CCDC144AA2RUR9 1427 aa24.26■■□□□ 1.47
CUX2-202ENST00000397643 PIK3C2GO75747 1445 aa24.26■■□□□ 1.47
CUX2-202ENST00000397643 RALGAPBQ86X10 1494 aa24.26■■□□□ 1.47
CUX2-202ENST00000397643 CCDC125Q86Z20 511 aa24.25■■□□□ 1.47
CUX2-202ENST00000397643 SPATA31A3Q5VYP0 1347 aa24.25■■□□□ 1.47
CUX2-202ENST00000397643 ANKRD30BQ9BXX2 1392 aa24.25■■□□□ 1.47
CUX2-202ENST00000397643 USP32Q8NFA0 1604 aa24.24■■□□□ 1.47
CUX2-202ENST00000397643 TMEM132EQ6IEE7 984 aa24.23■■□□□ 1.47
CUX2-202ENST00000397643 UNC5CLQ8IV45 518 aa24.22■■□□□ 1.47
CUX2-202ENST00000397643 YTHDC2Q9H6S0 1430 aaKnown RBP24.21■■□□□ 1.47
CUX2-202ENST00000397643 RGL3Q3MIN7 710 aa24.21■■□□□ 1.47
CUX2-202ENST00000397643 BRWD3Q6RI45 1802 aa24.19■■□□□ 1.46
CUX2-202ENST00000397643 BLMP54132 1417 aaPredicted RBP24.18■■□□□ 1.46
CUX2-202ENST00000397643 TNS3Q68CZ2 1445 aa24.17■■□□□ 1.46
CUX2-202ENST00000397643 RGPD8O14715 1765 aaPredicted RBP24.16■■□□□ 1.46
CUX2-202ENST00000397643 ABCA3Q99758 1704 aa24.15■■□□□ 1.46
CUX2-202ENST00000397643 KRT28Q7Z3Y7 464 aa24.15■■□□□ 1.46
CUX2-202ENST00000397643 PLCH1Q4KWH8 1693 aa24.15■■□□□ 1.46
CUX2-202ENST00000397643 NRXN1Q9ULB1 1477 aa24.13■■□□□ 1.45
CUX2-202ENST00000397643 NWD2Q9ULI1 1742 aa24.13■■□□□ 1.45
CUX2-202ENST00000397643 SIRT1Q96EB6 747 aa24.13■■□□□ 1.45
CUX2-202ENST00000397643 MPHOSPH9Q99550 1183 aa24.13■■□□□ 1.45
CUX2-202ENST00000397643 VPS72Q15906 364 aa24.11■■□□□ 1.45
CUX2-202ENST00000397643 PHF8Q9UPP1 1060 aa24.11■■□□□ 1.45
CUX2-202ENST00000397643 DEFB132Q7Z7B7 95 aa24.1■■□□□ 1.45
CUX2-202ENST00000397643 SEPT12Q8IYM1 358 aa24.1■■□□□ 1.45
CUX2-202ENST00000397643 CABLES1Q8TDN4 633 aa24.1■■□□□ 1.45
CUX2-202ENST00000397643 C14orf93Q9H972 538 aaKnown RBP24.1■■□□□ 1.45
CUX2-202ENST00000397643 SBNO1A3KN83 1393 aa24.1■■□□□ 1.45
CUX2-202ENST00000397643 ONECUT3O60422 494 aaPredicted RBP24.08■■□□□ 1.45
CUX2-202ENST00000397643 PSME1Q06323 249 aa24.05■■□□□ 1.44
CUX2-202ENST00000397643 CFAP70Q5T0N1 1121 aa24.05■■□□□ 1.44
CUX2-202ENST00000397643 ARHGEF10O15013 1369 aa24.04■■□□□ 1.44
CUX2-202ENST00000397643 NRAPQ86VF7 1730 aa24.04■■□□□ 1.44
CUX2-202ENST00000397643 DLC1Q96QB1 1528 aa24.04■■□□□ 1.44
CUX2-202ENST00000397643 DHX57Q6P158 1386 aaKnown RBP24.03■■□□□ 1.44
CUX2-202ENST00000397643 ADGRB2O60241 1585 aa24.03■■□□□ 1.44
CUX2-202ENST00000397643 LRP5O75197 1615 aa24.03■■□□□ 1.44
CUX2-202ENST00000397643 HAP1P54257 671 aaPredicted RBP24.03■■□□□ 1.44
CUX2-202ENST00000397643 TRPM3Q9HCF6 1732 aaPredicted RBP24.03■■□□□ 1.44
CUX2-202ENST00000397643 ANKARQ7Z5J8 1434 aa24.02■■□□□ 1.44
CUX2-202ENST00000397643 PRAM1Q96QH2 718 aa24.02■■□□□ 1.44
CUX2-202ENST00000397643 FAM83GA6ND36 823 aa24.01■■□□□ 1.43
CUX2-202ENST00000397643 PLEKHG5O94827 1062 aa24.01■■□□□ 1.43
CUX2-202ENST00000397643 KRT27Q7Z3Y8 459 aa24.01■■□□□ 1.43
CUX2-202ENST00000397643 SAFB2Q14151 953 aaKnown RBP eCLIP24■■□□□ 1.43
CUX2-202ENST00000397643 ADGRB1O14514 1584 aa23.99■■□□□ 1.43
CUX2-202ENST00000397643 ALS2Q96Q42 1657 aa23.99■■□□□ 1.43
CUX2-202ENST00000397643 SF3B2Q13435 895 aaKnown RBP23.98■■□□□ 1.43
CUX2-202ENST00000397643 CCDC9Q9Y3X0 531 aaKnown RBP23.98■■□□□ 1.43
CUX2-202ENST00000397643 LMOD2Q6P5Q4 547 aa23.97■■□□□ 1.43
CUX2-202ENST00000397643 PMFBP1Q8TBY8 1022 aa23.97■■□□□ 1.43
CUX2-202ENST00000397643 COL14A1Q05707 1796 aaKnown RBP23.95■■□□□ 1.42
CUX2-202ENST00000397643 CRYBG1Q9Y4K1 1723 aa23.95■■□□□ 1.42
CUX2-202ENST00000397643 PRR36Q9H6K5 1346 aa23.92■■□□□ 1.42
CUX2-202ENST00000397643 FAM98CQ17RN3 349 aaKnown RBP23.92■■□□□ 1.42
CUX2-202ENST00000397643 BTG4Q9NY30 223 aa23.92■■□□□ 1.42
CUX2-202ENST00000397643 POGKQ9P215 609 aa23.92■■□□□ 1.42
CUX2-202ENST00000397643 TULP4Q9NRJ4 1543 aa23.91■■□□□ 1.42
CUX2-202ENST00000397643 THSD7AQ9UPZ6 1657 aa23.9■■□□□ 1.42
CUX2-202ENST00000397643 ACIN1Q9UKV3 1341 aaKnown RBP23.89■■□□□ 1.42
CUX2-202ENST00000397643 BAG6P46379 1132 aa23.89■■□□□ 1.41
CUX2-202ENST00000397643 HIRIP3Q9BW71 556 aaPredicted RBP23.89■■□□□ 1.41
CUX2-202ENST00000397643 RGPD1P0DJD0 1748 aa23.89■■□□□ 1.41
CUX2-202ENST00000397643 A0A0G2JS52 829 aa23.88■■□□□ 1.41
CUX2-202ENST00000397643 PSDA5PKW4 1024 aaPredicted RBP23.88■■□□□ 1.41
CUX2-202ENST00000397643 MYT1Q01538 1121 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms