RNA–Protein interactions for RNA: ENST00000397477.2

CPSF1P1-201, Transcript of cleavage and polyadenylation specific factor 1 pseudogene 1, humanhuman

BASIC

Gene CPSF1P1, Length 3,730 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1P1-201ENST00000397477 MS4A1P11836 297 aa13.39□□□□□ -0.27
CPSF1P1-201ENST00000397477 PLXNC1O60486 1568 aa13.39□□□□□ -0.27
CPSF1P1-201ENST00000397477 TXNDC2Q86VQ3 553 aa13.39□□□□□ -0.27
CPSF1P1-201ENST00000397477 DDRGK1Q96HY6 314 aa13.39□□□□□ -0.27
CPSF1P1-201ENST00000397477 NPATQ14207 1427 aa13.39□□□□□ -0.27
CPSF1P1-201ENST00000397477 IGHDP01880 384 aa13.38□□□□□ -0.27
CPSF1P1-201ENST00000397477 FAM161AQ3B820 660 aa13.38□□□□□ -0.27
CPSF1P1-201ENST00000397477 PTPRTO14522 1441 aa13.38□□□□□ -0.27
CPSF1P1-201ENST00000397477 EXOSC9Q06265 439 aaKnown RBP13.38□□□□□ -0.27
CPSF1P1-201ENST00000397477 CLTCL1P53675 1640 aa13.37□□□□□ -0.27
CPSF1P1-201ENST00000397477 BLMP54132 1417 aaPredicted RBP13.37□□□□□ -0.27
CPSF1P1-201ENST00000397477 THUMPD2Q9BTF0 503 aaKnown RBP13.37□□□□□ -0.27
CPSF1P1-201ENST00000397477 SLKQ9H2G2 1235 aaPredicted RBP13.36□□□□□ -0.27
CPSF1P1-201ENST00000397477 UPF2Q9HAU5 1272 aaKnown RBP13.36□□□□□ -0.27
CPSF1P1-201ENST00000397477 SHROOM2Q13796 1616 aa13.36□□□□□ -0.27
CPSF1P1-201ENST00000397477 DIAPH1O60610 1272 aaKnown RBP13.36□□□□□ -0.27
CPSF1P1-201ENST00000397477 SLC52A1Q9NWF4 448 aa13.36□□□□□ -0.27
CPSF1P1-201ENST00000397477 TRPM2O94759 1503 aa13.36□□□□□ -0.27
CPSF1P1-201ENST00000397477 E9PCH4 1651 aa13.36□□□□□ -0.27
CPSF1P1-201ENST00000397477 POLR1AO95602 1720 aaPredicted RBP13.35□□□□□ -0.27
CPSF1P1-201ENST00000397477 ERVK-7P63135 1459 aa13.35□□□□□ -0.27
CPSF1P1-201ENST00000397477 ZBTB7CA1YPR0 619 aa13.35□□□□□ -0.27
CPSF1P1-201ENST00000397477 C14orf37Q86TY3 774 aa13.35□□□□□ -0.27
CPSF1P1-201ENST00000397477 RTN4Q9NQC3 1192 aaKnown RBP13.35□□□□□ -0.27
CPSF1P1-201ENST00000397477 RPGRIP1LQ68CZ1 1315 aa13.35□□□□□ -0.27
CPSF1P1-201ENST00000397477 CLASP1Q7Z460 1538 aa13.34□□□□□ -0.27
CPSF1P1-201ENST00000397477 RARSP54136 660 aaKnown RBP13.34□□□□□ -0.27
CPSF1P1-201ENST00000397477 NCKAP5LQ9HCH0 1330 aa13.34□□□□□ -0.27
CPSF1P1-201ENST00000397477 NKTRP30414 1462 aaKnown RBP13.33□□□□□ -0.28
CPSF1P1-201ENST00000397477 RLBP1P12271 317 aa13.33□□□□□ -0.28
CPSF1P1-201ENST00000397477 PRKAR2BP31323 418 aa13.33□□□□□ -0.28
CPSF1P1-201ENST00000397477 ZKSCAN2Q63HK3 967 aa13.33□□□□□ -0.28
CPSF1P1-201ENST00000397477 ZRANB1Q9UGI0 708 aa13.32□□□□□ -0.28
CPSF1P1-201ENST00000397477 PIK3C2GO75747 1445 aa13.32□□□□□ -0.28
CPSF1P1-201ENST00000397477 YEATS2Q9ULM3 1422 aa13.32□□□□□ -0.28
CPSF1P1-201ENST00000397477 ZMYM4Q5VZL5 1548 aa13.32□□□□□ -0.28
CPSF1P1-201ENST00000397477 RRS1Q15050 365 aaKnown RBP13.32□□□□□ -0.28
CPSF1P1-201ENST00000397477 FYB1O15117 783 aa13.31□□□□□ -0.28
CPSF1P1-201ENST00000397477 APBB1O00213 710 aa13.31□□□□□ -0.28
CPSF1P1-201ENST00000397477 DZIP1LQ8IYY4 767 aaKnown RBP13.31□□□□□ -0.28
CPSF1P1-201ENST00000397477 RWDD1Q9H446 243 aaPredicted RBP13.31□□□□□ -0.28
CPSF1P1-201ENST00000397477 ZNF521Q96K83 1311 aa13.31□□□□□ -0.28
CPSF1P1-201ENST00000397477 TMPOP42166 694 aaKnown RBP13.3□□□□□ -0.28
CPSF1P1-201ENST00000397477 POGZQ7Z3K3 1410 aa13.3□□□□□ -0.28
CPSF1P1-201ENST00000397477 MADDQ8WXG6 1647 aa13.3□□□□□ -0.28
CPSF1P1-201ENST00000397477 EMILIN1Q9Y6C2 1016 aa13.3□□□□□ -0.28
CPSF1P1-201ENST00000397477 MFAP1P55081 439 aaKnown RBP13.29□□□□□ -0.28
CPSF1P1-201ENST00000397477 NME9Q86XW9 330 aa13.29□□□□□ -0.28
CPSF1P1-201ENST00000397477 PMFBP1Q8TBY8 1022 aa13.29□□□□□ -0.28
CPSF1P1-201ENST00000397477 PDE3AQ14432 1141 aa13.29□□□□□ -0.28
CPSF1P1-201ENST00000397477 PDZRN3Q9UPQ7 1066 aa13.29□□□□□ -0.28
CPSF1P1-201ENST00000397477 PCDHB15Q9Y5E8 787 aa13.29□□□□□ -0.28
CPSF1P1-201ENST00000397477 NOB1Q9ULX3 412 aaKnown RBP13.29□□□□□ -0.28
CPSF1P1-201ENST00000397477 SLC26A8Q96RN1 970 aa13.28□□□□□ -0.28
CPSF1P1-201ENST00000397477 C1orf115Q9H7X2 142 aa13.28□□□□□ -0.28
CPSF1P1-201ENST00000397477 A0A1W2PP64 1363 aa13.28□□□□□ -0.28
CPSF1P1-201ENST00000397477 SSH1Q8WYL5 1049 aa13.28□□□□□ -0.28
CPSF1P1-201ENST00000397477 WDR63Q8IWG1 891 aa13.27□□□□□ -0.28
CPSF1P1-201ENST00000397477 CEBPAP49715 358 aaPredicted RBP13.27□□□□□ -0.29
CPSF1P1-201ENST00000397477 DCTN1Q14203 1278 aa13.27□□□□□ -0.29
CPSF1P1-201ENST00000397477 POLR3AO14802 1390 aaPredicted RBP13.27□□□□□ -0.29
CPSF1P1-201ENST00000397477 COG3Q96JB2 828 aa13.26□□□□□ -0.29
CPSF1P1-201ENST00000397477 NGEFQ8N5V2 710 aa13.26□□□□□ -0.29
CPSF1P1-201ENST00000397477 SPHKAPQ2M3C7 1700 aa13.26□□□□□ -0.29
CPSF1P1-201ENST00000397477 KDM2BQ8NHM5 1336 aa13.26□□□□□ -0.29
CPSF1P1-201ENST00000397477 NUTM2GQ5VZR2 741 aa13.26□□□□□ -0.29
CPSF1P1-201ENST00000397477 C8orf34Q49A92 452 aa13.25□□□□□ -0.29
CPSF1P1-201ENST00000397477 TET3O43151 1660 aa13.25□□□□□ -0.29
CPSF1P1-201ENST00000397477 SEC24BO95487 1268 aa13.25□□□□□ -0.29
CPSF1P1-201ENST00000397477 LNPKQ9C0E8 428 aa13.25□□□□□ -0.29
CPSF1P1-201ENST00000397477 ANKRD36BQ8N2N9 1353 aa13.25□□□□□ -0.29
CPSF1P1-201ENST00000397477 NPC1L1Q9UHC9 1359 aa13.25□□□□□ -0.29
CPSF1P1-201ENST00000397477 PNNQ9H307 717 aaKnown RBP13.25□□□□□ -0.29
CPSF1P1-201ENST00000397477 TRHP20396 242 aaPredicted RBP13.24□□□□□ -0.29
CPSF1P1-201ENST00000397477 BECN1Q14457 450 aa13.24□□□□□ -0.29
CPSF1P1-201ENST00000397477 LTV1Q96GA3 475 aaPredicted RBP13.24□□□□□ -0.29
CPSF1P1-201ENST00000397477 IPO8O15397 1037 aaKnown RBP13.23□□□□□ -0.29
CPSF1P1-201ENST00000397477 TRMT2AQ8IZ69 625 aaKnown RBP13.23□□□□□ -0.29
CPSF1P1-201ENST00000397477 EFCAB6Q5THR3 1501 aa13.23□□□□□ -0.29
CPSF1P1-201ENST00000397477 HSP90AA1P07900 732 aaKnown RBP13.23□□□□□ -0.29
CPSF1P1-201ENST00000397477 TMEM57Q8N5G2 664 aa13.23□□□□□ -0.29
CPSF1P1-201ENST00000397477 FAM83GA6ND36 823 aa13.23□□□□□ -0.29
CPSF1P1-201ENST00000397477 MVPQ14764 893 aaKnown RBP13.23□□□□□ -0.29
CPSF1P1-201ENST00000397477 NFKBIBQ15653 356 aa13.23□□□□□ -0.29
CPSF1P1-201ENST00000397477 SYNMO15061 1565 aa13.22□□□□□ -0.29
CPSF1P1-201ENST00000397477 TRIM27P14373 513 aa13.22□□□□□ -0.29
CPSF1P1-201ENST00000397477 KDM5AP29375 1690 aaKnown RBP13.22□□□□□ -0.29
CPSF1P1-201ENST00000397477 NUDT16Q96DE0 195 aaKnown RBP13.22□□□□□ -0.29
CPSF1P1-201ENST00000397477 PHACTR3Q96KR7 559 aa13.22□□□□□ -0.29
CPSF1P1-201ENST00000397477 ATAD2Q6PL18 1390 aa13.22□□□□□ -0.29
CPSF1P1-201ENST00000397477 ABCA6Q8N139 1617 aa13.22□□□□□ -0.29
CPSF1P1-201ENST00000397477 RNF17Q9BXT8 1623 aaKnown RBP13.21□□□□□ -0.29
CPSF1P1-201ENST00000397477 MAP3K4Q9Y6R4 1608 aa13.21□□□□□ -0.29
CPSF1P1-201ENST00000397477 ANKRD45Q5TZF3 282 aa13.21□□□□□ -0.29
CPSF1P1-201ENST00000397477 LMOD2Q6P5Q4 547 aa13.21□□□□□ -0.29
CPSF1P1-201ENST00000397477 HDGFP51858 240 aaKnown RBP13.21□□□□□ -0.29
CPSF1P1-201ENST00000397477 NGDNQ8NEJ9 315 aaKnown RBP13.21□□□□□ -0.29
CPSF1P1-201ENST00000397477 FRAT2O75474 233 aaPredicted RBP13.21□□□□□ -0.3
CPSF1P1-201ENST00000397477 ATF7IPQ6VMQ6 1270 aa13.21□□□□□ -0.3
CPSF1P1-201ENST00000397477 NECTIN2Q92692 538 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms