RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 RGS3P49796 1198 aa12.87□□□□□ -0.35
COL17A1-203ENST00000393211 RPGRIP1LQ68CZ1 1315 aa12.87□□□□□ -0.35
COL17A1-203ENST00000393211 NSD2O96028 1365 aa12.86□□□□□ -0.35
COL17A1-203ENST00000393211 PPLO60437 1756 aa12.86□□□□□ -0.35
COL17A1-203ENST00000393211 QRICH2Q9H0J4 1663 aa12.85□□□□□ -0.35
COL17A1-203ENST00000393211 KIDINS220Q9ULH0 1771 aa12.85□□□□□ -0.35
COL17A1-203ENST00000393211 UGGT1Q9NYU2 1555 aa12.85□□□□□ -0.35
COL17A1-203ENST00000393211 IGHDP01880 384 aa12.84□□□□□ -0.35
COL17A1-203ENST00000393211 BECN1Q14457 450 aa12.84□□□□□ -0.35
COL17A1-203ENST00000393211 MORC1Q86VD1 984 aa12.84□□□□□ -0.35
COL17A1-203ENST00000393211 NSD3Q9BZ95 1437 aa12.84□□□□□ -0.35
COL17A1-203ENST00000393211 CT47B1P0C2W7 299 aaPredicted RBP12.84□□□□□ -0.35
COL17A1-203ENST00000393211 CANXP27824 592 aaKnown RBP12.84□□□□□ -0.35
COL17A1-203ENST00000393211 CFAP53Q96M91 514 aa12.84□□□□□ -0.35
COL17A1-203ENST00000393211 C14orf93Q9H972 538 aaKnown RBP12.84□□□□□ -0.35
COL17A1-203ENST00000393211 ZNF518AQ6AHZ1 1483 aa12.83□□□□□ -0.36
COL17A1-203ENST00000393211 ADGRB1O14514 1584 aa12.83□□□□□ -0.36
COL17A1-203ENST00000393211 RARSP54136 660 aaKnown RBP12.83□□□□□ -0.36
COL17A1-203ENST00000393211 USP19O94966 1318 aa12.83□□□□□ -0.36
COL17A1-203ENST00000393211 NOS1P29475 1434 aa12.83□□□□□ -0.36
COL17A1-203ENST00000393211 SLC4A3P48751 1232 aa12.82□□□□□ -0.36
COL17A1-203ENST00000393211 DMRT2Q9Y5R5 561 aa12.82□□□□□ -0.36
COL17A1-203ENST00000393211 CFAP74Q9C0B2 1584 aa12.82□□□□□ -0.36
COL17A1-203ENST00000393211 IL27Q8NEV9 243 aa12.8□□□□□ -0.36
COL17A1-203ENST00000393211 MYH16Q9H6N6 1097 aa12.8□□□□□ -0.36
COL17A1-203ENST00000393211 ADGRB2O60241 1585 aa12.8□□□□□ -0.36
COL17A1-203ENST00000393211 TCP11L2Q8N4U5 519 aa12.8□□□□□ -0.36
COL17A1-203ENST00000393211 FRAT1Q92837 279 aaPredicted RBP12.8□□□□□ -0.36
COL17A1-203ENST00000393211 RWDD1Q9H446 243 aaPredicted RBP12.8□□□□□ -0.36
COL17A1-203ENST00000393211 UPF2Q9HAU5 1272 aaKnown RBP12.8□□□□□ -0.36
COL17A1-203ENST00000393211 COG6Q9Y2V7 657 aa12.8□□□□□ -0.36
COL17A1-203ENST00000393211 PANK1Q8TE04 598 aa12.79□□□□□ -0.36
COL17A1-203ENST00000393211 NLRP1Q9C000 1473 aa12.78□□□□□ -0.36
COL17A1-203ENST00000393211 MLH3Q9UHC1 1453 aa12.78□□□□□ -0.36
COL17A1-203ENST00000393211 ANKRD36BQ8N2N9 1353 aa12.78□□□□□ -0.36
COL17A1-203ENST00000393211 FRAT2O75474 233 aaPredicted RBP12.77□□□□□ -0.36
COL17A1-203ENST00000393211 HECW2Q9P2P5 1572 aa12.77□□□□□ -0.36
COL17A1-203ENST00000393211 EVC2Q86UK5 1308 aa12.77□□□□□ -0.37
COL17A1-203ENST00000393211 NPATQ14207 1427 aa12.76□□□□□ -0.37
COL17A1-203ENST00000393211 SLC12A5Q9H2X9 1139 aa12.76□□□□□ -0.37
COL17A1-203ENST00000393211 ASXL2Q76L83 1435 aa12.76□□□□□ -0.37
COL17A1-203ENST00000393211 GLI2P10070 1586 aa12.75□□□□□ -0.37
COL17A1-203ENST00000393211 MTHFSP49914 203 aa12.75□□□□□ -0.37
COL17A1-203ENST00000393211 TBC1D32Q96NH3 1257 aa12.75□□□□□ -0.37
COL17A1-203ENST00000393211 PIK3C2BO00750 1634 aa12.75□□□□□ -0.37
COL17A1-203ENST00000393211 ARHGEF28Q8N1W1 1705 aaKnown RBP12.75□□□□□ -0.37
COL17A1-203ENST00000393211 DNAJC5Q9H3Z4 198 aa12.74□□□□□ -0.37
COL17A1-203ENST00000393211 TRAK1Q9UPV9 953 aa12.74□□□□□ -0.37
COL17A1-203ENST00000393211 PCDHB15Q9Y5E8 787 aa12.74□□□□□ -0.37
COL17A1-203ENST00000393211 IL16Q14005 1332 aa12.74□□□□□ -0.37
COL17A1-203ENST00000393211 FRMPD1Q5SYB0 1578 aa12.74□□□□□ -0.37
COL17A1-203ENST00000393211 ZFYVE9O95405 1425 aa12.73□□□□□ -0.37
COL17A1-203ENST00000393211 POGZQ7Z3K3 1410 aa12.73□□□□□ -0.37
COL17A1-203ENST00000393211 MVPQ14764 893 aaKnown RBP12.73□□□□□ -0.37
COL17A1-203ENST00000393211 ZKSCAN2Q63HK3 967 aa12.73□□□□□ -0.37
COL17A1-203ENST00000393211 PDZRN3Q9UPQ7 1066 aa12.73□□□□□ -0.37
COL17A1-203ENST00000393211 ABCC3O15438 1527 aa12.73□□□□□ -0.37
COL17A1-203ENST00000393211 ABCC11Q96J66 1382 aa12.73□□□□□ -0.37
COL17A1-203ENST00000393211 CAMSAP1Q5T5Y3 1602 aa12.73□□□□□ -0.37
COL17A1-203ENST00000393211 MED14O60244 1454 aa12.73□□□□□ -0.37
COL17A1-203ENST00000393211 VGFO15240 615 aaPredicted RBP12.73□□□□□ -0.37
COL17A1-203ENST00000393211 TULP4Q9NRJ4 1543 aa12.73□□□□□ -0.37
COL17A1-203ENST00000393211 SEC24BO95487 1268 aa12.72□□□□□ -0.37
COL17A1-203ENST00000393211 RLBP1P12271 317 aa12.72□□□□□ -0.37
COL17A1-203ENST00000393211 ANTXR1Q9H6X2 564 aa12.72□□□□□ -0.37
COL17A1-203ENST00000393211 BRPF3Q9ULD4 1205 aa12.72□□□□□ -0.37
COL17A1-203ENST00000393211 ANKRD26Q9UPS8 1709 aa12.71□□□□□ -0.37
COL17A1-203ENST00000393211 HDAC1Q13547 482 aaPredicted RBP12.71□□□□□ -0.37
COL17A1-203ENST00000393211 NEUROD2Q15784 382 aa12.71□□□□□ -0.37
COL17A1-203ENST00000393211 DZIP1LQ8IYY4 767 aaKnown RBP12.71□□□□□ -0.37
COL17A1-203ENST00000393211 RRP7AQ9Y3A4 280 aaKnown RBP12.71□□□□□ -0.37
COL17A1-203ENST00000393211 ARHGAP31Q2M1Z3 1444 aa12.71□□□□□ -0.38
COL17A1-203ENST00000393211 NEXMIFQ5QGS0 1516 aa12.71□□□□□ -0.38
COL17A1-203ENST00000393211 CHGAP10645 457 aaKnown RBP12.7□□□□□ -0.38
COL17A1-203ENST00000393211 L1TD1Q5T7N2 865 aaKnown RBP12.7□□□□□ -0.38
COL17A1-203ENST00000393211 PNNQ9H307 717 aaKnown RBP12.7□□□□□ -0.38
COL17A1-203ENST00000393211 FAM43AQ8N2R8 423 aa12.7□□□□□ -0.38
COL17A1-203ENST00000393211 DDX19BQ9UMR2 479 aa12.7□□□□□ -0.38
COL17A1-203ENST00000393211 U2AF1L5P0DN76 240 aaPredicted RBP12.69□□□□□ -0.38
COL17A1-203ENST00000393211 TNNT2P45379 298 aaPredicted RBP12.69□□□□□ -0.38
COL17A1-203ENST00000393211 U2AF1Q01081 240 aaKnown RBP eCLIP12.69□□□□□ -0.38
COL17A1-203ENST00000393211 FTSJ3Q8IY81 847 aaKnown RBP12.69□□□□□ -0.38
COL17A1-203ENST00000393211 COL3A1P02461 1466 aaPredicted RBP12.68□□□□□ -0.38
COL17A1-203ENST00000393211 ATAD2Q6PL18 1390 aa12.67□□□□□ -0.38
COL17A1-203ENST00000393211 CLTCQ00610 1675 aaKnown RBP12.67□□□□□ -0.38
COL17A1-203ENST00000393211 PLEKHF1Q96S99 279 aa12.67□□□□□ -0.38
COL17A1-203ENST00000393211 TBC1D2Q9BYX2 928 aa12.67□□□□□ -0.38
COL17A1-203ENST00000393211 TMEM132EQ6IEE7 984 aa12.66□□□□□ -0.38
COL17A1-203ENST00000393211 ZNF428Q96B54 188 aa12.66□□□□□ -0.38
COL17A1-203ENST00000393211 SIGLEC1Q9BZZ2 1709 aa12.66□□□□□ -0.38
COL17A1-203ENST00000393211 CD109Q6YHK3 1445 aa12.66□□□□□ -0.38
COL17A1-203ENST00000393211 IPO8O15397 1037 aaKnown RBP12.66□□□□□ -0.38
COL17A1-203ENST00000393211 TMPOP42166 694 aaKnown RBP12.66□□□□□ -0.38
COL17A1-203ENST00000393211 SMC5Q8IY18 1101 aa12.66□□□□□ -0.38
COL17A1-203ENST00000393211 RTN4Q9NQC3 1192 aaKnown RBP12.66□□□□□ -0.38
COL17A1-203ENST00000393211 NEO1Q92859 1461 aa12.65□□□□□ -0.38
COL17A1-203ENST00000393211 ATF7IPQ6VMQ6 1270 aa12.65□□□□□ -0.38
COL17A1-203ENST00000393211 OSCARQ8IYS5 282 aa12.65□□□□□ -0.38
COL17A1-203ENST00000393211 SMC4Q9NTJ3 1288 aa12.65□□□□□ -0.38
COL17A1-203ENST00000393211 TNNQ9UQP3 1299 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms