RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 SIRT1Q96EB6 747 aa27.67■■■□□ 2.02
CKS1B-203ENST00000368439 JCADQ9P266 1359 aa27.65■■■□□ 2.02
CKS1B-203ENST00000368439 DLC1Q96QB1 1528 aa27.62■■■□□ 2.01
CKS1B-203ENST00000368439 SHPRHQ149N8 1683 aa27.62■■■□□ 2.01
CKS1B-203ENST00000368439 FMN2Q9NZ56 1722 aa27.59■■■□□ 2.01
CKS1B-203ENST00000368439 ORAI2Q96SN7 254 aa27.59■■■□□ 2.01
CKS1B-203ENST00000368439 TRIM26Q12899 539 aaPredicted RBP27.58■■■□□ 2.01
CKS1B-203ENST00000368439 DDX17Q92841 729 aaKnown RBP27.58■■■□□ 2.01
CKS1B-203ENST00000368439 KIAA1210Q9ULL0 1709 aa27.55■■■□□ 2
CKS1B-203ENST00000368439 PRAM1Q96QH2 718 aa27.54■■■□□ 2
CKS1B-203ENST00000368439 PHF23Q9BUL5 403 aaPredicted RBP27.54■■■□□ 2
CKS1B-203ENST00000368439 RGS17Q9UGC6 210 aaPredicted RBP27.54■■■□□ 2
CKS1B-203ENST00000368439 LRP6O75581 1613 aa27.52■■■□□ 2
CKS1B-203ENST00000368439 SIN3AQ96ST3 1273 aa27.52■■■□□ 2
CKS1B-203ENST00000368439 SPATA31A6Q5VVP1 1343 aa27.51■■□□□ 1.99
CKS1B-203ENST00000368439 TRAK1Q9UPV9 953 aa27.51■■□□□ 1.99
CKS1B-203ENST00000368439 RGPD8O14715 1765 aaPredicted RBP27.5■■□□□ 1.99
CKS1B-203ENST00000368439 ARHGEF28Q8N1W1 1705 aaKnown RBP27.5■■□□□ 1.99
CKS1B-203ENST00000368439 ADGRB2O60241 1585 aa27.5■■□□□ 1.99
CKS1B-203ENST00000368439 SOS2Q07890 1332 aaPredicted RBP27.49■■□□□ 1.99
CKS1B-203ENST00000368439 LRRC59Q96AG4 307 aaKnown RBP27.49■■□□□ 1.99
CKS1B-203ENST00000368439 SAFB2Q14151 953 aaKnown RBP eCLIP27.48■■□□□ 1.99
CKS1B-203ENST00000368439 ESCO1Q5FWF5 840 aa27.48■■□□□ 1.99
CKS1B-203ENST00000368439 NUTM2FA1L443 756 aa27.47■■□□□ 1.99
CKS1B-203ENST00000368439 L3MBTL2Q969R5 705 aa27.46■■□□□ 1.99
CKS1B-203ENST00000368439 POGKQ9P215 609 aa27.46■■□□□ 1.99
CKS1B-203ENST00000368439 PNPLA6Q8IY17 1366 aa27.46■■□□□ 1.99
CKS1B-203ENST00000368439 USP32Q8NFA0 1604 aa27.45■■□□□ 1.98
CKS1B-203ENST00000368439 PXDNQ92626 1479 aa27.44■■□□□ 1.98
CKS1B-203ENST00000368439 KIF1AQ12756 1690 aa27.43■■□□□ 1.98
CKS1B-203ENST00000368439 NBPF1Q3BBV0 1214 aa27.42■■□□□ 1.98
CKS1B-203ENST00000368439 NPHP3Q7Z494 1330 aa27.41■■□□□ 1.98
CKS1B-203ENST00000368439 NEUROD1Q13562 356 aa27.4■■□□□ 1.98
CKS1B-203ENST00000368439 SOCS7O14512 581 aa27.39■■□□□ 1.98
CKS1B-203ENST00000368439 FOXO3O43524 673 aa27.39■■□□□ 1.98
CKS1B-203ENST00000368439 COL22A1Q8NFW1 1626 aaPredicted RBP27.38■■□□□ 1.97
CKS1B-203ENST00000368439 MINK1Q8N4C8 1332 aaPredicted RBP27.38■■□□□ 1.97
CKS1B-203ENST00000368439 ANKARQ7Z5J8 1434 aa27.37■■□□□ 1.97
CKS1B-203ENST00000368439 HIRIP3Q9BW71 556 aaPredicted RBP27.37■■□□□ 1.97
CKS1B-203ENST00000368439 POTEAQ6S8J7 498 aa27.36■■□□□ 1.97
CKS1B-203ENST00000368439 TRPM1Q7Z4N2 1603 aa27.36■■□□□ 1.97
CKS1B-203ENST00000368439 NUTM2BA6NNL0 878 aaPredicted RBP27.35■■□□□ 1.97
CKS1B-203ENST00000368439 NUTM2EB1AL46 878 aaPredicted RBP27.35■■□□□ 1.97
CKS1B-203ENST00000368439 NUTM2AQ8IVF1 878 aaPredicted RBP27.35■■□□□ 1.97
CKS1B-203ENST00000368439 XPCQ01831 940 aaPredicted RBP27.34■■□□□ 1.97
CKS1B-203ENST00000368439 TULP4Q9NRJ4 1543 aa27.33■■□□□ 1.97
CKS1B-203ENST00000368439 PHF8Q9UPP1 1060 aa27.33■■□□□ 1.97
CKS1B-203ENST00000368439 WASLO00401 505 aaPredicted RBP27.32■■□□□ 1.96
CKS1B-203ENST00000368439 PRR36Q9H6K5 1346 aa27.32■■□□□ 1.96
CKS1B-203ENST00000368439 MEX3CQ5U5Q3 659 aaKnown RBP27.31■■□□□ 1.96
CKS1B-203ENST00000368439 EIF3AQ14152 1382 aaKnown RBP27.28■■□□□ 1.96
CKS1B-203ENST00000368439 KRT28Q7Z3Y7 464 aa27.27■■□□□ 1.96
CKS1B-203ENST00000368439 SPATA31A3Q5VYP0 1347 aa27.26■■□□□ 1.95
CKS1B-203ENST00000368439 ATP7BP35670 1465 aa27.25■■□□□ 1.95
CKS1B-203ENST00000368439 NBPF8Q3BBV2 869 aa27.25■■□□□ 1.95
CKS1B-203ENST00000368439 PMFBP1Q8TBY8 1022 aa27.24■■□□□ 1.95
CKS1B-203ENST00000368439 ITSN1Q15811 1721 aa27.24■■□□□ 1.95
CKS1B-203ENST00000368439 TRPM3Q9HCF6 1732 aaPredicted RBP27.23■■□□□ 1.95
CKS1B-203ENST00000368439 QRICH2Q9H0J4 1663 aa27.23■■□□□ 1.95
CKS1B-203ENST00000368439 MARF1Q9Y4F3 1742 aaKnown RBP27.22■■□□□ 1.95
CKS1B-203ENST00000368439 ZNF772Q68DY9 489 aaPredicted RBP27.22■■□□□ 1.95
CKS1B-203ENST00000368439 AFF2P51816 1311 aa27.21■■□□□ 1.95
CKS1B-203ENST00000368439 TOPAZ1Q8N9V7 1692 aa27.21■■□□□ 1.95
CKS1B-203ENST00000368439 CDK19Q9BWU1 502 aa27.21■■□□□ 1.95
CKS1B-203ENST00000368439 SBNO1A3KN83 1393 aa27.21■■□□□ 1.95
CKS1B-203ENST00000368439 CENPJQ9HC77 1338 aaPredicted RBP27.2■■□□□ 1.95
CKS1B-203ENST00000368439 ADAMTS2O95450 1211 aa27.2■■□□□ 1.94
CKS1B-203ENST00000368439 TNS3Q68CZ2 1445 aa27.2■■□□□ 1.94
CKS1B-203ENST00000368439 PSME1Q06323 249 aa27.19■■□□□ 1.94
CKS1B-203ENST00000368439 NUDT16Q96DE0 195 aaKnown RBP27.19■■□□□ 1.94
CKS1B-203ENST00000368439 C8orf37Q96NL8 207 aa27.19■■□□□ 1.94
CKS1B-203ENST00000368439 GPRASP1Q5JY77 1395 aa27.19■■□□□ 1.94
CKS1B-203ENST00000368439 ROCK2O75116 1388 aaKnown RBP27.18■■□□□ 1.94
CKS1B-203ENST00000368439 TONSLQ96HA7 1378 aa27.18■■□□□ 1.94
CKS1B-203ENST00000368439 ALS2Q96Q42 1657 aa27.16■■□□□ 1.94
CKS1B-203ENST00000368439 ABCA3Q99758 1704 aa27.15■■□□□ 1.94
CKS1B-203ENST00000368439 NGLY1Q96IV0 654 aa27.13■■□□□ 1.93
CKS1B-203ENST00000368439 RALGAPBQ86X10 1494 aa27.12■■□□□ 1.93
CKS1B-203ENST00000368439 FNBP4Q8N3X1 1017 aaPredicted RBP27.11■■□□□ 1.93
CKS1B-203ENST00000368439 ARHGEF10O15013 1369 aa27.1■■□□□ 1.93
CKS1B-203ENST00000368439 CCDC61Q9Y6R9 512 aa27.1■■□□□ 1.93
CKS1B-203ENST00000368439 POLR3AO14802 1390 aaPredicted RBP27.09■■□□□ 1.93
CKS1B-203ENST00000368439 NGDNQ8NEJ9 315 aaKnown RBP27.09■■□□□ 1.93
CKS1B-203ENST00000368439 PLEKHG3A1L390 1219 aa27.08■■□□□ 1.93
CKS1B-203ENST00000368439 PCGF6Q9BYE7 350 aa27.08■■□□□ 1.93
CKS1B-203ENST00000368439 CRYBG1Q9Y4K1 1723 aa27.07■■□□□ 1.92
CKS1B-203ENST00000368439 CABLES1Q8TDN4 633 aa27.07■■□□□ 1.92
CKS1B-203ENST00000368439 RXRBP28702 533 aa27.06■■□□□ 1.92
CKS1B-203ENST00000368439 QTRT2Q9H974 415 aaKnown RBP27.06■■□□□ 1.92
CKS1B-203ENST00000368439 CABP2Q9NPB3 220 aa27.06■■□□□ 1.92
CKS1B-203ENST00000368439 BCL9LQ86UU0 1499 aa27.06■■□□□ 1.92
CKS1B-203ENST00000368439 SRPK2P78362 688 aaKnown RBP27.05■■□□□ 1.92
CKS1B-203ENST00000368439 USP21Q9UK80 565 aa27.05■■□□□ 1.92
CKS1B-203ENST00000368439 ACEP12821 1306 aa27.05■■□□□ 1.92
CKS1B-203ENST00000368439 CDK12Q9NYV4 1490 aaPredicted RBP27.05■■□□□ 1.92
CKS1B-203ENST00000368439 LMOD2Q6P5Q4 547 aa27.04■■□□□ 1.92
CKS1B-203ENST00000368439 PPIP5K1Q6PFW1 1433 aa27.03■■□□□ 1.92
CKS1B-203ENST00000368439 CARD11Q9BXL7 1154 aa27.03■■□□□ 1.92
CKS1B-203ENST00000368439 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.03■■□□□ 1.92
CKS1B-203ENST00000368439 SLIT2O94813 1529 aa27.02■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms