RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 PSMA5P28066 241 aa11.64□□□□□ -0.55
CUX1-203ENST00000360264 TXLNAP40222 546 aa11.64□□□□□ -0.55
CUX1-203ENST00000360264 SMC3Q9UQE7 1217 aa11.64□□□□□ -0.55
CUX1-203ENST00000360264 KANK4Q5T7N3 995 aaPredicted RBP11.64□□□□□ -0.55
CUX1-203ENST00000360264 CCDC191Q8NCU4 936 aa11.64□□□□□ -0.55
CUX1-203ENST00000360264 DIAPH1O60610 1272 aaKnown RBP11.64□□□□□ -0.55
CUX1-203ENST00000360264 GAS2L2Q8NHY3 880 aa11.63□□□□□ -0.55
CUX1-203ENST00000360264 USP47Q96K76 1375 aa11.63□□□□□ -0.55
CUX1-203ENST00000360264 L3MBTL2Q969R5 705 aa11.63□□□□□ -0.55
CUX1-203ENST00000360264 RIC3Q7Z5B4 369 aa11.63□□□□□ -0.55
CUX1-203ENST00000360264 PTPRGP23470 1445 aa11.63□□□□□ -0.55
CUX1-203ENST00000360264 HSP90AB2PQ58FF8 381 aa11.63□□□□□ -0.55
CUX1-203ENST00000360264 DESP17661 470 aa11.63□□□□□ -0.55
CUX1-203ENST00000360264 RRP1P56182 461 aaKnown RBP11.63□□□□□ -0.55
CUX1-203ENST00000360264 CECR2Q9BXF3 1484 aa11.62□□□□□ -0.55
CUX1-203ENST00000360264 DHX57Q6P158 1386 aaKnown RBP11.62□□□□□ -0.55
CUX1-203ENST00000360264 RRP7AQ9Y3A4 280 aaKnown RBP11.62□□□□□ -0.55
CUX1-203ENST00000360264 TMEM132AQ24JP5 1023 aa11.62□□□□□ -0.55
CUX1-203ENST00000360264 NUTM2FA1L443 756 aa11.62□□□□□ -0.55
CUX1-203ENST00000360264 PATL2C9JE40 543 aaKnown RBP11.62□□□□□ -0.55
CUX1-203ENST00000360264 RIPK4P57078 832 aa11.62□□□□□ -0.55
CUX1-203ENST00000360264 TXLNBQ8N3L3 684 aa11.62□□□□□ -0.55
CUX1-203ENST00000360264 LUC7LQ9NQ29 371 aaKnown RBP11.62□□□□□ -0.55
CUX1-203ENST00000360264 CWC15Q9P013 229 aaKnown RBP11.62□□□□□ -0.55
CUX1-203ENST00000360264 TSPYL4Q9UJ04 414 aa11.62□□□□□ -0.55
CUX1-203ENST00000360264 CADPSQ9ULU8 1353 aa11.62□□□□□ -0.55
CUX1-203ENST00000360264 PDCP20941 246 aa11.62□□□□□ -0.55
CUX1-203ENST00000360264 SMARCE1Q969G3 411 aa11.62□□□□□ -0.55
CUX1-203ENST00000360264 CHMP5Q9NZZ3 219 aa11.62□□□□□ -0.55
CUX1-203ENST00000360264 SCAPERQ9BY12 1400 aa11.61□□□□□ -0.55
CUX1-203ENST00000360264 MCM2P49736 904 aa11.61□□□□□ -0.55
CUX1-203ENST00000360264 LETM1O95202 739 aaPredicted RBP11.61□□□□□ -0.55
CUX1-203ENST00000360264 MAGEC2Q9UBF1 373 aaPredicted RBP11.61□□□□□ -0.55
CUX1-203ENST00000360264 TDRD9Q8NDG6 1382 aaKnown RBP11.61□□□□□ -0.55
CUX1-203ENST00000360264 ERLIN2O94905 339 aa11.61□□□□□ -0.55
CUX1-203ENST00000360264 ERC1Q8IUD2 1116 aa11.61□□□□□ -0.55
CUX1-203ENST00000360264 CCDC27Q2M243 656 aa11.61□□□□□ -0.55
CUX1-203ENST00000360264 CUX1P39880 1505 aa11.6□□□□□ -0.55
CUX1-203ENST00000360264 RUNDC1Q96C34 613 aa11.6□□□□□ -0.55
CUX1-203ENST00000360264 TRIM21P19474 475 aaKnown RBP11.6□□□□□ -0.55
CUX1-203ENST00000360264 CDK5RAP3Q96JB5 506 aa11.6□□□□□ -0.55
CUX1-203ENST00000360264 UBTFL1P0CB47 393 aaPredicted RBP11.6□□□□□ -0.55
CUX1-203ENST00000360264 GPRASP1Q5JY77 1395 aa11.6□□□□□ -0.55
CUX1-203ENST00000360264 OSCARQ8IYS5 282 aa11.59□□□□□ -0.55
CUX1-203ENST00000360264 PAF1Q8N7H5 531 aa11.59□□□□□ -0.55
CUX1-203ENST00000360264 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.59□□□□□ -0.557e-7■■■□□ 15.6
CUX1-203ENST00000360264 KIF6Q6ZMV9 814 aa11.59□□□□□ -0.55
CUX1-203ENST00000360264 CAGE1Q8TC20 777 aa11.59□□□□□ -0.55
CUX1-203ENST00000360264 ZNF396Q96N95 335 aaPredicted RBP11.59□□□□□ -0.55
CUX1-203ENST00000360264 FHOD3Q2V2M9 1422 aa11.59□□□□□ -0.55
CUX1-203ENST00000360264 SMG6Q86US8 1419 aaKnown RBP11.59□□□□□ -0.55
CUX1-203ENST00000360264 VPS37CA5D8V6 355 aaPredicted RBP11.58□□□□□ -0.56
CUX1-203ENST00000360264 MAP7D2Q96T17 732 aa11.58□□□□□ -0.56
CUX1-203ENST00000360264 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.58□□□□□ -0.56
CUX1-203ENST00000360264 RRBP1Q9P2E9 1410 aaKnown RBP11.58□□□□□ -0.56
CUX1-203ENST00000360264 STIM1Q13586 685 aa11.58□□□□□ -0.56
CUX1-203ENST00000360264 SYCP1Q15431 976 aa11.58□□□□□ -0.56
CUX1-203ENST00000360264 WASHC4Q2M389 1173 aa11.58□□□□□ -0.56
CUX1-203ENST00000360264 IFT57Q9NWB7 429 aa11.58□□□□□ -0.56
CUX1-203ENST00000360264 FOXD4L6Q3SYB3 417 aaPredicted RBP11.58□□□□□ -0.56
CUX1-203ENST00000360264 FOXD4L3Q6VB84 417 aaPredicted RBP11.58□□□□□ -0.56
CUX1-203ENST00000360264 CCDC39Q9UFE4 941 aa11.58□□□□□ -0.56
CUX1-203ENST00000360264 ZNF771Q7L3S4 317 aaPredicted RBP11.58□□□□□ -0.56
CUX1-203ENST00000360264 CDC45O75419 566 aa11.57□□□□□ -0.56
CUX1-203ENST00000360264 ZFYVE27Q5T4F4 411 aa11.57□□□□□ -0.56
CUX1-203ENST00000360264 JMYQ8N9B5 988 aa11.57□□□□□ -0.56
CUX1-203ENST00000360264 GOLGA6L10A6NI86 522 aa11.57□□□□□ -0.56
CUX1-203ENST00000360264 PLEKHO1Q53GL0 409 aaPredicted RBP11.57□□□□□ -0.56
CUX1-203ENST00000360264 MBD3O95983 291 aa11.57□□□□□ -0.56
CUX1-203ENST00000360264 ZNHIT6Q9NWK9 470 aaKnown RBP11.56□□□□□ -0.56
CUX1-203ENST00000360264 MYOM3Q5VTT5 1437 aa11.56□□□□□ -0.56
CUX1-203ENST00000360264 CCDC158Q5M9N0 1113 aa11.56□□□□□ -0.56
CUX1-203ENST00000360264 DNAI2Q9GZS0 605 aa11.56□□□□□ -0.56
CUX1-203ENST00000360264 MINK1Q8N4C8 1332 aaPredicted RBP11.56□□□□□ -0.56
CUX1-203ENST00000360264 IKQ13123 557 aaPredicted RBP11.56□□□□□ -0.56
CUX1-203ENST00000360264 KLHL34Q8N239 644 aa11.56□□□□□ -0.56
CUX1-203ENST00000360264 BCL2L13Q9BXK5 485 aa11.56□□□□□ -0.56
CUX1-203ENST00000360264 HMGN5P82970 282 aaKnown RBP11.56□□□□□ -0.56
CUX1-203ENST00000360264 FILIP1LQ4L180 1135 aa11.56□□□□□ -0.56
CUX1-203ENST00000360264 CLASRPQ8N2M8 674 aaKnown RBP11.56□□□□□ -0.56
CUX1-203ENST00000360264 PDIA4P13667 645 aaKnown RBP11.56□□□□□ -0.56
CUX1-203ENST00000360264 FAM43AQ8N2R8 423 aa11.56□□□□□ -0.56
CUX1-203ENST00000360264 GOLGA4Q13439 2230 aaKnown RBP11.55□□□□□ -0.56
CUX1-203ENST00000360264 DACH1Q9UI36 760 aa11.55□□□□□ -0.56
CUX1-203ENST00000360264 GSE1Q14687 1217 aa11.55□□□□□ -0.56
CUX1-203ENST00000360264 CCDC30Q5VVM6 783 aa11.55□□□□□ -0.56
CUX1-203ENST00000360264 PDE4AP27815 886 aa11.55□□□□□ -0.56
CUX1-203ENST00000360264 EZRP15311 586 aaKnown RBP11.54□□□□□ -0.56
CUX1-203ENST00000360264 SDF4Q9BRK5 362 aa11.54□□□□□ -0.56
CUX1-203ENST00000360264 KINO60870 393 aaKnown RBP11.54□□□□□ -0.56
CUX1-203ENST00000360264 FYCO1Q9BQS8 1478 aa11.54□□□□□ -0.56
CUX1-203ENST00000360264 ELL2O00472 640 aaPredicted RBP11.54□□□□□ -0.56
CUX1-203ENST00000360264 NLRP2Q9NX02 1062 aa11.54□□□□□ -0.56
CUX1-203ENST00000360264 FBXO3Q9UK99 471 aa11.54□□□□□ -0.56
CUX1-203ENST00000360264 PNISRQ8TF01 805 aaKnown RBP11.54□□□□□ -0.56
CUX1-203ENST00000360264 CT47B1P0C2W7 299 aaPredicted RBP11.53□□□□□ -0.56
CUX1-203ENST00000360264 IQCEQ6IPM2 695 aa11.53□□□□□ -0.56
CUX1-203ENST00000360264 RABEP1Q15276 862 aa11.53□□□□□ -0.56
CUX1-203ENST00000360264 FSD1Q9BTV5 496 aa11.53□□□□□ -0.56
CUX1-203ENST00000360264 NACAP1Q9BZK3 213 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms