RNA–Protein interactions for RNA: ENST00000357162.6

VPS13B-202, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13B, Length 14,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-202ENST00000357162 APPP05067 770 aa7.88□□□□□ -1.15
VPS13B-202ENST00000357162 AKAP17AQ02040 695 aaKnown RBP7.87□□□□□ -1.15
VPS13B-202ENST00000357162 KINO60870 393 aaKnown RBP7.87□□□□□ -1.15
VPS13B-202ENST00000357162 TRIM6-TRIM34B2RNG4 842 aa7.87□□□□□ -1.15
VPS13B-202ENST00000357162 A6NNZ2 444 aa7.87□□□□□ -1.15
VPS13B-202ENST00000357162 TUBB8Q3ZCM7 444 aa7.87□□□□□ -1.15
VPS13B-202ENST00000357162 ZNF396Q96N95 335 aaPredicted RBP7.87□□□□□ -1.15
VPS13B-202ENST00000357162 EIF4G1Q04637 1599 aaKnown RBP7.87□□□□□ -1.15
VPS13B-202ENST00000357162 AQRO60306 1485 aaKnown RBP eCLIP7.87□□□□□ -1.159e-7■■■■■ 29.7
VPS13B-202ENST00000357162 SMARCE1Q969G3 411 aa7.87□□□□□ -1.15
VPS13B-202ENST00000357162 TSPY26PQ9H489 355 aa7.87□□□□□ -1.15
VPS13B-202ENST00000357162 LRRC9Q6ZRR7 1453 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 CECR2Q9BXF3 1484 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 GOLGA6L10A0A0M3HER8 536 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 ERLIN2O94905 339 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 SYNE3Q6ZMZ3 975 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 ZMYM3Q14202 1370 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 DACH1Q9UI36 760 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 CPLX1O14810 134 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 CTAGE5O15320 804 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 SRPK2P78362 688 aaKnown RBP7.86□□□□□ -1.15
VPS13B-202ENST00000357162 RUNDC1Q96C34 613 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 ANKRD30BQ9BXX2 1392 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 CADPSQ9ULU8 1353 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 TRAK2O60296 914 aa7.86□□□□□ -1.15
VPS13B-202ENST00000357162 NEXNQ0ZGT2 675 aa7.85□□□□□ -1.15
VPS13B-202ENST00000357162 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.85□□□□□ -1.15
VPS13B-202ENST00000357162 INSRP06213 1382 aa7.85□□□□□ -1.15
VPS13B-202ENST00000357162 TRIM29Q14134 588 aa7.85□□□□□ -1.15
VPS13B-202ENST00000357162 TPD52L1Q16890 204 aaPredicted RBP7.85□□□□□ -1.15
VPS13B-202ENST00000357162 VGFO15240 615 aaPredicted RBP7.85□□□□□ -1.15
VPS13B-202ENST00000357162 WDR63Q8IWG1 891 aa7.85□□□□□ -1.15
VPS13B-202ENST00000357162 GRPEL1Q9HAV7 217 aa7.85□□□□□ -1.15
VPS13B-202ENST00000357162 BRMS1Q9HCU9 246 aa7.85□□□□□ -1.15
VPS13B-202ENST00000357162 ABCC11Q96J66 1382 aa7.85□□□□□ -1.15
VPS13B-202ENST00000357162 SRRTQ9BXP5 876 aaKnown RBP7.85□□□□□ -1.15
VPS13B-202ENST00000357162 BCL11BQ9C0K0 894 aaPredicted RBP7.85□□□□□ -1.15
VPS13B-202ENST00000357162 TPRP12270 2363 aaKnown RBP7.84□□□□□ -1.15
VPS13B-202ENST00000357162 MYO10Q9HD67 2058 aa7.84□□□□□ -1.15
VPS13B-202ENST00000357162 ANKRD18AQ8IVF6 992 aa7.84□□□□□ -1.15
VPS13B-202ENST00000357162 MICALCLQ6ZW33 695 aa7.84□□□□□ -1.15
VPS13B-202ENST00000357162 CFAP45Q9UL16 551 aa7.84□□□□□ -1.15
VPS13B-202ENST00000357162 KANK4Q5T7N3 995 aaPredicted RBP7.84□□□□□ -1.15
VPS13B-202ENST00000357162 OLFM4Q6UX06 510 aa7.84□□□□□ -1.15
VPS13B-202ENST00000357162 SMC3Q9UQE7 1217 aa7.84□□□□□ -1.15
VPS13B-202ENST00000357162 ICE1Q9Y2F5 2266 aa7.84□□□□□ -1.15
VPS13B-202ENST00000357162 GSDMDP57764 484 aa7.84□□□□□ -1.15
VPS13B-202ENST00000357162 JAKMIP3Q5VZ66 844 aa7.84□□□□□ -1.15
VPS13B-202ENST00000357162 ERC1Q8IUD2 1116 aa7.84□□□□□ -1.15
VPS13B-202ENST00000357162 HMGB2P26583 209 aaKnown RBP7.84□□□□□ -1.15
VPS13B-202ENST00000357162 CEP57L1Q8IYX8 460 aa7.84□□□□□ -1.16
VPS13B-202ENST00000357162 XBP1P17861 261 aa7.83□□□□□ -1.16
VPS13B-202ENST00000357162 CCDC141Q6ZP82 1450 aa7.83□□□□□ -1.16
VPS13B-202ENST00000357162 RASSF8Q8NHQ8 419 aa7.83□□□□□ -1.16
VPS13B-202ENST00000357162 SCAND2PQ9GZW5 306 aaPredicted RBP7.83□□□□□ -1.16
VPS13B-202ENST00000357162 ZSCAN31Q96LW9 406 aaPredicted RBP7.83□□□□□ -1.16
VPS13B-202ENST00000357162 CGNQ9P2M7 1197 aaKnown RBP7.83□□□□□ -1.16
VPS13B-202ENST00000357162 C14orf37Q86TY3 774 aa7.83□□□□□ -1.16
VPS13B-202ENST00000357162 GTPBP4Q9BZE4 634 aaKnown RBP7.83□□□□□ -1.16
VPS13B-202ENST00000357162 HECW1Q76N89 1606 aa7.83□□□□□ -1.16
VPS13B-202ENST00000357162 IVLP07476 585 aa7.83□□□□□ -1.16
VPS13B-202ENST00000357162 SH2B1Q9NRF2 756 aaPredicted RBP7.83□□□□□ -1.16
VPS13B-202ENST00000357162 V9GYY5 206 aaPredicted RBP7.83□□□□□ -1.16
VPS13B-202ENST00000357162 HMGB1P09429 215 aaKnown RBP7.83□□□□□ -1.16
VPS13B-202ENST00000357162 TRDNQ13061 729 aa7.83□□□□□ -1.16
VPS13B-202ENST00000357162 BICD2Q8TD16 824 aa7.83□□□□□ -1.16
VPS13B-202ENST00000357162 GBP2P32456 591 aaPredicted RBP7.83□□□□□ -1.16
VPS13B-202ENST00000357162 TRIM5Q9C035 493 aa7.82□□□□□ -1.16
VPS13B-202ENST00000357162 EHBP1Q8NDI1 1231 aa7.82□□□□□ -1.16
VPS13B-202ENST00000357162 KIF18AQ8NI77 898 aa7.82□□□□□ -1.16
VPS13B-202ENST00000357162 ZNHIT6Q9NWK9 470 aaKnown RBP7.82□□□□□ -1.16
VPS13B-202ENST00000357162 ST20-MTHFSA0A0A6YYL1 179 aa7.82□□□□□ -1.16
VPS13B-202ENST00000357162 TOP2BQ02880 1626 aa7.82□□□□□ -1.16
VPS13B-202ENST00000357162 GNAI3P08754 354 aa7.82□□□□□ -1.16
VPS13B-202ENST00000357162 AEBP2Q6ZN18 517 aaPredicted RBP7.82□□□□□ -1.16
VPS13B-202ENST00000357162 SART3Q15020 963 aaKnown RBP7.82□□□□□ -1.16
VPS13B-202ENST00000357162 GPRASP1Q5JY77 1395 aa7.82□□□□□ -1.16
VPS13B-202ENST00000357162 SH3BGRP55822 239 aaPredicted RBP7.82□□□□□ -1.16
VPS13B-202ENST00000357162 AK9Q5TCS8 1911 aa7.82□□□□□ -1.16
VPS13B-202ENST00000357162 HMGB1P1B2RPK0 211 aaPredicted RBP7.82□□□□□ -1.16
VPS13B-202ENST00000357162 PANK3Q9H999 370 aa7.82□□□□□ -1.16
VPS13B-202ENST00000357162 EZRP15311 586 aaKnown RBP7.82□□□□□ -1.16
VPS13B-202ENST00000357162 CCDC83Q8IWF9 413 aa7.82□□□□□ -1.16
VPS13B-202ENST00000357162 PAXBP1Q9Y5B6 917 aa7.82□□□□□ -1.16
VPS13B-202ENST00000357162 KRT32Q14532 448 aa7.81□□□□□ -1.16
VPS13B-202ENST00000357162 DNAAF4Q8WXU2 420 aa7.81□□□□□ -1.16
VPS13B-202ENST00000357162 THOC2Q8NI27 1593 aaKnown RBP7.81□□□□□ -1.16
VPS13B-202ENST00000357162 UVSSAQ2YD98 709 aa7.81□□□□□ -1.16
VPS13B-202ENST00000357162 GORABQ5T7V8 394 aa7.81□□□□□ -1.16
VPS13B-202ENST00000357162 STIM1Q13586 685 aa7.81□□□□□ -1.16
VPS13B-202ENST00000357162 BAZ2BQ9UIF8 2168 aaKnown RBP7.81□□□□□ -1.16
VPS13B-202ENST00000357162 KIF3BO15066 747 aa7.81□□□□□ -1.16
VPS13B-202ENST00000357162 TTLL5Q6EMB2 1281 aa7.81□□□□□ -1.16
VPS13B-202ENST00000357162 CLCN1P35523 988 aa7.81□□□□□ -1.16
VPS13B-202ENST00000357162 CDKL5O76039 1030 aa7.81□□□□□ -1.16
VPS13B-202ENST00000357162 TIAM1Q13009 1591 aa7.81□□□□□ -1.16
VPS13B-202ENST00000357162 DDX58O95786 925 aaKnown RBP7.81□□□□□ -1.16
VPS13B-202ENST00000357162 MCM4P33991 863 aa7.81□□□□□ -1.16
VPS13B-202ENST00000357162 RP1P56715 2156 aa7.81□□□□□ -1.16
VPS13B-202ENST00000357162 PPP6R1Q9UPN7 881 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms