RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 HSPA2P54652 639 aa25.09■■□□□ 1.61
SMARCD3-202ENST00000356800 MINK1Q8N4C8 1332 aaPredicted RBP25.09■■□□□ 1.61
SMARCD3-202ENST00000356800 PIK3R4Q99570 1358 aa25.09■■□□□ 1.61
SMARCD3-202ENST00000356800 AMOTL2Q9Y2J4 779 aa25.08■■□□□ 1.61
SMARCD3-202ENST00000356800 EVC2Q86UK5 1308 aa25.07■■□□□ 1.6
SMARCD3-202ENST00000356800 PTCH1Q13635 1447 aa25.05■■□□□ 1.6
SMARCD3-202ENST00000356800 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.04■■□□□ 1.6
SMARCD3-202ENST00000356800 STRCQ7RTU9 1775 aa25.03■■□□□ 1.6
SMARCD3-202ENST00000356800 PUS7Q96PZ0 661 aaKnown RBP25.02■■□□□ 1.6
SMARCD3-202ENST00000356800 KCNA6P17658 529 aa25.01■■□□□ 1.59
SMARCD3-202ENST00000356800 PANK3Q9H999 370 aa25■■□□□ 1.59
SMARCD3-202ENST00000356800 CABP2Q9NPB3 220 aa25■■□□□ 1.59
SMARCD3-202ENST00000356800 ANP32CO43423 234 aa24.99■■□□□ 1.59
SMARCD3-202ENST00000356800 ADGRB2O60241 1585 aa24.99■■□□□ 1.59
SMARCD3-202ENST00000356800 PER1O15534 1290 aaPredicted RBP24.97■■□□□ 1.59
SMARCD3-202ENST00000356800 CDK19Q9BWU1 502 aa24.97■■□□□ 1.59
SMARCD3-202ENST00000356800 NWD1Q149M9 1564 aa24.96■■□□□ 1.59
SMARCD3-202ENST00000356800 SRPK2P78362 688 aaKnown RBP24.96■■□□□ 1.59
SMARCD3-202ENST00000356800 WASLO00401 505 aaPredicted RBP24.94■■□□□ 1.58
SMARCD3-202ENST00000356800 SLC12A5Q9H2X9 1139 aa24.93■■□□□ 1.58
SMARCD3-202ENST00000356800 ATAD2Q6PL18 1390 aa24.92■■□□□ 1.58
SMARCD3-202ENST00000356800 TMC1Q8TDI8 760 aa24.91■■□□□ 1.58
SMARCD3-202ENST00000356800 PRKRIP1Q9H875 184 aaPredicted RBP24.91■■□□□ 1.58
SMARCD3-202ENST00000356800 STRCP1A6NGW2 1772 aa24.9■■□□□ 1.58
SMARCD3-202ENST00000356800 NALCNQ8IZF0 1738 aa24.88■■□□□ 1.57
SMARCD3-202ENST00000356800 CARD14Q9BXL6 1004 aa24.88■■□□□ 1.57
SMARCD3-202ENST00000356800 NINLQ9Y2I6 1382 aa24.87■■□□□ 1.57
SMARCD3-202ENST00000356800 ATP7BP35670 1465 aa24.85■■□□□ 1.57
SMARCD3-202ENST00000356800 CCER2I3L3R5 266 aa24.85■■□□□ 1.57
SMARCD3-202ENST00000356800 CNGB1Q14028 1251 aaPredicted RBP24.85■■□□□ 1.57
SMARCD3-202ENST00000356800 CD163L1Q9NR16 1453 aa24.85■■□□□ 1.57
SMARCD3-202ENST00000356800 ANKRD36BQ8N2N9 1353 aa24.84■■□□□ 1.57
SMARCD3-202ENST00000356800 PRR36Q9H6K5 1346 aa24.84■■□□□ 1.57
SMARCD3-202ENST00000356800 USP32Q8NFA0 1604 aa24.83■■□□□ 1.57
SMARCD3-202ENST00000356800 NKTRP30414 1462 aaKnown RBP24.83■■□□□ 1.57
SMARCD3-202ENST00000356800 TOPAZ1Q8N9V7 1692 aa24.83■■□□□ 1.57
SMARCD3-202ENST00000356800 AMER1Q5JTC6 1135 aaPredicted RBP24.82■■□□□ 1.56
SMARCD3-202ENST00000356800 NUDT16Q96DE0 195 aaKnown RBP24.82■■□□□ 1.56
SMARCD3-202ENST00000356800 RBM33Q96EV2 1170 aaKnown RBP24.82■■□□□ 1.56
SMARCD3-202ENST00000356800 KNSTRNQ9Y448 316 aa24.82■■□□□ 1.56
SMARCD3-202ENST00000356800 CABP1Q9NZU7 370 aa24.81■■□□□ 1.56
SMARCD3-202ENST00000356800 FMN2Q9NZ56 1722 aa24.81■■□□□ 1.56
SMARCD3-202ENST00000356800 A0A1W2PP64 1363 aa24.8■■□□□ 1.56
SMARCD3-202ENST00000356800 RGPD8O14715 1765 aaPredicted RBP24.8■■□□□ 1.56
SMARCD3-202ENST00000356800 PPIP5K1Q6PFW1 1433 aa24.8■■□□□ 1.56
SMARCD3-202ENST00000356800 NSD3Q9BZ95 1437 aa24.8■■□□□ 1.56
SMARCD3-202ENST00000356800 CDC42BPGQ6DT37 1551 aa24.8■■□□□ 1.56
SMARCD3-202ENST00000356800 KTN1Q86UP2 1357 aaKnown RBP24.8■■□□□ 1.56
SMARCD3-202ENST00000356800 ADGRL3Q9HAR2 1447 aa24.79■■□□□ 1.56
SMARCD3-202ENST00000356800 PARD3Q8TEW0 1356 aa24.79■■□□□ 1.56
SMARCD3-202ENST00000356800 CC2D1BQ5T0F9 858 aaKnown RBP24.78■■□□□ 1.56
SMARCD3-202ENST00000356800 CCDC61Q9Y6R9 512 aa24.78■■□□□ 1.56
SMARCD3-202ENST00000356800 NPC1L1Q9UHC9 1359 aa24.77■■□□□ 1.56
SMARCD3-202ENST00000356800 PROSER2Q86WR7 435 aaPredicted RBP24.76■■□□□ 1.55
SMARCD3-202ENST00000356800 ITSN1Q15811 1721 aa24.76■■□□□ 1.55
SMARCD3-202ENST00000356800 NUTM2FA1L443 756 aa24.75■■□□□ 1.55
SMARCD3-202ENST00000356800 RALBP1Q15311 655 aa24.75■■□□□ 1.55
SMARCD3-202ENST00000356800 TERF2IPQ9NYB0 399 aa24.75■■□□□ 1.55
SMARCD3-202ENST00000356800 AKAP12Q02952 1782 aa24.75■■□□□ 1.55
SMARCD3-202ENST00000356800 CPSF1Q10570 1443 aaKnown RBP24.74■■□□□ 1.55
SMARCD3-202ENST00000356800 CCDC184Q52MB2 194 aa24.73■■□□□ 1.55
SMARCD3-202ENST00000356800 MON2Q7Z3U7 1717 aa24.72■■□□□ 1.55
SMARCD3-202ENST00000356800 HDGFL2Q7Z4V5 671 aaPredicted RBP24.72■■□□□ 1.55
SMARCD3-202ENST00000356800 ANKARQ7Z5J8 1434 aa24.72■■□□□ 1.55
SMARCD3-202ENST00000356800 XIRP1Q702N8 1843 aaKnown RBP24.71■■□□□ 1.55
SMARCD3-202ENST00000356800 TMEM94Q12767 1356 aa24.7■■□□□ 1.54
SMARCD3-202ENST00000356800 PLEKHG3A1L390 1219 aa24.69■■□□□ 1.54
SMARCD3-202ENST00000356800 MYBBP1AQ9BQG0 1328 aaKnown RBP24.69■■□□□ 1.54
SMARCD3-202ENST00000356800 ZNF335Q9H4Z2 1342 aaPredicted RBP24.68■■□□□ 1.54
SMARCD3-202ENST00000356800 C14orf37Q86TY3 774 aa24.68■■□□□ 1.54
SMARCD3-202ENST00000356800 CGNL1Q0VF96 1302 aa24.68■■□□□ 1.54
SMARCD3-202ENST00000356800 KIF20BQ96Q89 1820 aa24.66■■□□□ 1.54
SMARCD3-202ENST00000356800 DMRT2Q9Y5R5 561 aa24.66■■□□□ 1.54
SMARCD3-202ENST00000356800 NCOA3Q9Y6Q9 1424 aa24.66■■□□□ 1.54
SMARCD3-202ENST00000356800 ANKRD26Q9UPS8 1709 aa24.65■■□□□ 1.54
SMARCD3-202ENST00000356800 NRKQ7Z2Y5 1582 aa24.64■■□□□ 1.54
SMARCD3-202ENST00000356800 ACEP12821 1306 aa24.64■■□□□ 1.54
SMARCD3-202ENST00000356800 LRRC7Q96NW7 1537 aa24.64■■□□□ 1.53
SMARCD3-202ENST00000356800 EDC4Q6P2E9 1401 aaKnown RBP24.63■■□□□ 1.53
SMARCD3-202ENST00000356800 C19orf44Q9H6X5 657 aa24.63■■□□□ 1.53
SMARCD3-202ENST00000356800 NSD2O96028 1365 aa24.63■■□□□ 1.53
SMARCD3-202ENST00000356800 MRS2Q9HD23 443 aa24.62■■□□□ 1.53
SMARCD3-202ENST00000356800 POLR3AO14802 1390 aaPredicted RBP24.62■■□□□ 1.53
SMARCD3-202ENST00000356800 PMFBP1Q8TBY8 1022 aa24.62■■□□□ 1.53
SMARCD3-202ENST00000356800 ZNF692Q9BU19 519 aaPredicted RBP24.61■■□□□ 1.53
SMARCD3-202ENST00000356800 FYB1O15117 783 aa24.6■■□□□ 1.53
SMARCD3-202ENST00000356800 NLRP13Q86W25 1043 aa24.6■■□□□ 1.53
SMARCD3-202ENST00000356800 BRD4O60885 1362 aaPredicted RBP24.6■■□□□ 1.53
SMARCD3-202ENST00000356800 PPP2R1AP30153 589 aa24.59■■□□□ 1.53
SMARCD3-202ENST00000356800 USP6P35125 1406 aa24.59■■□□□ 1.53
SMARCD3-202ENST00000356800 DCCP43146 1447 aa24.59■■□□□ 1.53
SMARCD3-202ENST00000356800 YTHDC1Q96MU7 727 aaKnown RBP24.59■■□□□ 1.53
SMARCD3-202ENST00000356800 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.58■■□□□ 1.53
SMARCD3-202ENST00000356800 MORC1Q86VD1 984 aa24.57■■□□□ 1.52
SMARCD3-202ENST00000356800 GGNBP2Q9H3C7 697 aa24.57■■□□□ 1.52
SMARCD3-202ENST00000356800 SSH2Q76I76 1423 aa24.57■■□□□ 1.52
SMARCD3-202ENST00000356800 C1orf167Q5SNV9 1468 aa24.55■■□□□ 1.52
SMARCD3-202ENST00000356800 NGDNQ8NEJ9 315 aaKnown RBP24.55■■□□□ 1.52
SMARCD3-202ENST00000356800 PHF8Q9UPP1 1060 aa24.55■■□□□ 1.52
SMARCD3-202ENST00000356800 MST1RQ04912 1400 aa24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms