RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 CFAP65Q6ZU64 1925 aaKnown RBP15.04■□□□□ -0
USP1-201ENST00000339950 SSH1Q8WYL5 1049 aa15.04■□□□□ -0
USP1-201ENST00000339950 VGFO15240 615 aaPredicted RBP15.04■□□□□ -0
USP1-201ENST00000339950 VSIG10Q8N0Z9 540 aa15.03■□□□□ -0
USP1-201ENST00000339950 MIS18AQ9NYP9 233 aa15.03■□□□□ -0
USP1-201ENST00000339950 TXNDC2Q86VQ3 553 aa15.02■□□□□ -0
USP1-201ENST00000339950 TMEM57Q8N5G2 664 aa15.02■□□□□ -0
USP1-201ENST00000339950 C22orf23Q9BZE7 217 aa15.02■□□□□ -0
USP1-201ENST00000339950 ZRANB1Q9UGI0 708 aa15.01□□□□□ -0.01
USP1-201ENST00000339950 NCKAP5LQ9HCH0 1330 aa15.01□□□□□ -0.01
USP1-201ENST00000339950 IDI1Q13907 227 aa15.01□□□□□ -0.01
USP1-201ENST00000339950 EIF4G3O43432 1585 aaKnown RBP15□□□□□ -0.01
USP1-201ENST00000339950 NOS1P29475 1434 aa15□□□□□ -0.01
USP1-201ENST00000339950 IPO8O15397 1037 aaKnown RBP14.99□□□□□ -0.01
USP1-201ENST00000339950 FAM83GA6ND36 823 aa14.99□□□□□ -0.01
USP1-201ENST00000339950 UHRF1BP1Q6BDS2 1440 aa14.99□□□□□ -0.01
USP1-201ENST00000339950 PBRM1Q86U86 1689 aa14.99□□□□□ -0.01
USP1-201ENST00000339950 PLCB2Q00722 1185 aa14.98□□□□□ -0.01
USP1-201ENST00000339950 EMILIN1Q9Y6C2 1016 aa14.98□□□□□ -0.01
USP1-201ENST00000339950 CEP170Q5SW79 1584 aa14.98□□□□□ -0.01
USP1-201ENST00000339950 TMPOP42166 694 aaKnown RBP14.98□□□□□ -0.01
USP1-201ENST00000339950 CDK19Q9BWU1 502 aa14.98□□□□□ -0.01
USP1-201ENST00000339950 PDE3AQ14432 1141 aa14.97□□□□□ -0.01
USP1-201ENST00000339950 RBM33Q96EV2 1170 aaKnown RBP14.97□□□□□ -0.01
USP1-201ENST00000339950 MAGI2Q86UL8 1455 aa14.97□□□□□ -0.01
USP1-201ENST00000339950 TRIM27P14373 513 aa14.97□□□□□ -0.01
USP1-201ENST00000339950 KDM5CP41229 1560 aa14.97□□□□□ -0.01
USP1-201ENST00000339950 MVPQ14764 893 aaKnown RBP14.96□□□□□ -0.02
USP1-201ENST00000339950 PLA2R1Q13018 1463 aa14.96□□□□□ -0.02
USP1-201ENST00000339950 TBC1D2Q9BYX2 928 aa14.95□□□□□ -0.02
USP1-201ENST00000339950 GOLGA6L3A6NEY3 463 aa14.95□□□□□ -0.02
USP1-201ENST00000339950 PNNQ9H307 717 aaKnown RBP14.95□□□□□ -0.02
USP1-201ENST00000339950 MBD5Q9P267 1494 aa14.94□□□□□ -0.02
USP1-201ENST00000339950 KRT24Q2M2I5 525 aa14.94□□□□□ -0.02
USP1-201ENST00000339950 MPNDQ8N594 471 aa14.94□□□□□ -0.02
USP1-201ENST00000339950 DDX19BQ9UMR2 479 aa14.94□□□□□ -0.02
USP1-201ENST00000339950 FAM69CQ0P6D2 419 aa14.94□□□□□ -0.02
USP1-201ENST00000339950 NME9Q86XW9 330 aa14.94□□□□□ -0.02
USP1-201ENST00000339950 ATF7IPQ6VMQ6 1270 aa14.93□□□□□ -0.02
USP1-201ENST00000339950 NKTRP30414 1462 aaKnown RBP14.93□□□□□ -0.02
USP1-201ENST00000339950 RBM42Q9BTD8 480 aaKnown RBP14.93□□□□□ -0.02
USP1-201ENST00000339950 ADGRL2O95490 1459 aa14.93□□□□□ -0.02
USP1-201ENST00000339950 TRIM6-TRIM34B2RNG4 842 aa14.92□□□□□ -0.02
USP1-201ENST00000339950 DTNBO60941 627 aa14.92□□□□□ -0.02
USP1-201ENST00000339950 OSCARQ8IYS5 282 aa14.92□□□□□ -0.02
USP1-201ENST00000339950 KDM2BQ8NHM5 1336 aa14.92□□□□□ -0.02
USP1-201ENST00000339950 GPRASP1Q5JY77 1395 aa14.92□□□□□ -0.02
USP1-201ENST00000339950 SMARCA5O60264 1052 aaPredicted RBP14.92□□□□□ -0.02
USP1-201ENST00000339950 COL17A1Q9UMD9 1497 aaPredicted RBP14.91□□□□□ -0.02
USP1-201ENST00000339950 SLC26A8Q96RN1 970 aa14.91□□□□□ -0.02
USP1-201ENST00000339950 SCAF11Q99590 1463 aaKnown RBP14.91□□□□□ -0.02
USP1-201ENST00000339950 TSPYL6Q8N831 410 aa14.91□□□□□ -0.02
USP1-201ENST00000339950 CCDC9Q9Y3X0 531 aaKnown RBP14.91□□□□□ -0.02
USP1-201ENST00000339950 TSHZ3Q63HK5 1081 aa14.9□□□□□ -0.02
USP1-201ENST00000339950 MCM10Q7L590 875 aa14.9□□□□□ -0.02
USP1-201ENST00000339950 RILPL2Q969X0 211 aa14.9□□□□□ -0.02
USP1-201ENST00000339950 UGGT1Q9NYU2 1555 aa14.9□□□□□ -0.02
USP1-201ENST00000339950 COG3Q96JB2 828 aa14.9□□□□□ -0.02
USP1-201ENST00000339950 SULT6B1Q6IMI4 303 aa14.9□□□□□ -0.02
USP1-201ENST00000339950 PANK2Q9BZ23 570 aa14.9□□□□□ -0.02
USP1-201ENST00000339950 ATAD2Q6PL18 1390 aa14.9□□□□□ -0.02
USP1-201ENST00000339950 RTF1Q92541 710 aaKnown RBP14.89□□□□□ -0.03
USP1-201ENST00000339950 PHACTR3Q96KR7 559 aa14.89□□□□□ -0.03
USP1-201ENST00000339950 EIF2S2P20042 333 aaKnown RBP14.89□□□□□ -0.03
USP1-201ENST00000339950 NGDNQ8NEJ9 315 aaKnown RBP14.89□□□□□ -0.03
USP1-201ENST00000339950 A0A0G2JS52 829 aa14.88□□□□□ -0.03
USP1-201ENST00000339950 ABCC10Q5T3U5 1492 aa14.88□□□□□ -0.03
USP1-201ENST00000339950 GOLGA6L22H0YM25 854 aa14.88□□□□□ -0.03
USP1-201ENST00000339950 FYB1O15117 783 aa14.88□□□□□ -0.03
USP1-201ENST00000339950 TRAK2O60296 914 aa14.88□□□□□ -0.03
USP1-201ENST00000339950 TWISTNBQ3B726 338 aaPredicted RBP14.88□□□□□ -0.03
USP1-201ENST00000339950 ITSN2Q9NZM3 1697 aa14.87□□□□□ -0.03
USP1-201ENST00000339950 OS9Q13438 667 aaPredicted RBP14.87□□□□□ -0.03
USP1-201ENST00000339950 ARHGEF12Q9NZN5 1544 aa14.87□□□□□ -0.03
USP1-201ENST00000339950 AMPHP49418 695 aa14.87□□□□□ -0.03
USP1-201ENST00000339950 ADGRL1O94910 1474 aa14.87□□□□□ -0.03
USP1-201ENST00000339950 F6X3S4 739 aa14.86□□□□□ -0.03
USP1-201ENST00000339950 WDR63Q8IWG1 891 aa14.86□□□□□ -0.03
USP1-201ENST00000339950 C16orf71Q8IYS4 520 aaPredicted RBP14.86□□□□□ -0.03
USP1-201ENST00000339950 C14orf93Q9H972 538 aaKnown RBP14.86□□□□□ -0.03
USP1-201ENST00000339950 DDX49Q9Y6V7 483 aaKnown RBP14.86□□□□□ -0.03
USP1-201ENST00000339950 NUP160Q12769 1436 aa14.86□□□□□ -0.03
USP1-201ENST00000339950 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.86□□□□□ -0.03
USP1-201ENST00000339950 FANCAO15360 1455 aa14.85□□□□□ -0.03
USP1-201ENST00000339950 HSP90AA2PQ14568 343 aaPredicted RBP14.85□□□□□ -0.03
USP1-201ENST00000339950 ERCC6L2Q5T890 1561 aa14.85□□□□□ -0.03
USP1-201ENST00000339950 PLCH2O75038 1416 aa14.85□□□□□ -0.03
USP1-201ENST00000339950 CHMP5Q9NZZ3 219 aa14.84□□□□□ -0.03
USP1-201ENST00000339950 MAP4K4O95819 1239 aaPredicted RBP14.84□□□□□ -0.03
USP1-201ENST00000339950 AEBP1Q8IUX7 1158 aa14.84□□□□□ -0.03
USP1-201ENST00000339950 L1TD1Q5T7N2 865 aaKnown RBP14.83□□□□□ -0.03
USP1-201ENST00000339950 NGEFQ8N5V2 710 aa14.83□□□□□ -0.04
USP1-201ENST00000339950 LARP6Q9BRS8 491 aaKnown RBP14.83□□□□□ -0.04
USP1-201ENST00000339950 ASXL1Q8IXJ9 1541 aa14.83□□□□□ -0.04
USP1-201ENST00000339950 PTMAP06454 111 aaKnown RBP14.83□□□□□ -0.04
USP1-201ENST00000339950 DNTTIP2Q5QJE6 756 aaKnown RBP14.83□□□□□ -0.04
USP1-201ENST00000339950 CHD1LQ86WJ1 897 aa14.83□□□□□ -0.04
USP1-201ENST00000339950 BLMP54132 1417 aaPredicted RBP14.82□□□□□ -0.04
USP1-201ENST00000339950 MCTP1Q6DN14 999 aa14.82□□□□□ -0.04
USP1-201ENST00000339950 MCM4P33991 863 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms