RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 PLEKHH1Q9ULM0 1364 aa20.09■□□□□ 0.81
LIMS1-201ENST00000332345 MST1RQ04912 1400 aa20.09■□□□□ 0.81
LIMS1-201ENST00000332345 DLC1Q96QB1 1528 aa20.08■□□□□ 0.81
LIMS1-201ENST00000332345 SAFB2Q14151 953 aaKnown RBP eCLIP20.08■□□□□ 0.81
LIMS1-201ENST00000332345 NBPF1Q3BBV0 1214 aa20.08■□□□□ 0.81
LIMS1-201ENST00000332345 BRINP3Q76B58 766 aa20.08■□□□□ 0.81
LIMS1-201ENST00000332345 CLSPNQ9HAW4 1339 aa20.06■□□□□ 0.8
LIMS1-201ENST00000332345 C1orf167Q5SNV9 1468 aa20.05■□□□□ 0.8
LIMS1-201ENST00000332345 CDC42BPGQ6DT37 1551 aa20.03■□□□□ 0.8
LIMS1-201ENST00000332345 PHLPP1O60346 1717 aa20.02■□□□□ 0.79
LIMS1-201ENST00000332345 ESCO1Q5FWF5 840 aa20.01■□□□□ 0.79
LIMS1-201ENST00000332345 CCER1Q8TC90 406 aaPredicted RBP20.01■□□□□ 0.79
LIMS1-201ENST00000332345 ORAI2Q96SN7 254 aa20.01■□□□□ 0.79
LIMS1-201ENST00000332345 NUTM2FA1L443 756 aa20■□□□□ 0.79
LIMS1-201ENST00000332345 NBPF8Q3BBV2 869 aa20■□□□□ 0.79
LIMS1-201ENST00000332345 MINK1Q8N4C8 1332 aaPredicted RBP20■□□□□ 0.79
LIMS1-201ENST00000332345 TIMELESSQ9UNS1 1208 aa19.99■□□□□ 0.79
LIMS1-201ENST00000332345 ROCK2O75116 1388 aaKnown RBP19.98■□□□□ 0.79
LIMS1-201ENST00000332345 HIRIP3Q9BW71 556 aaPredicted RBP19.98■□□□□ 0.79
LIMS1-201ENST00000332345 AHDC1Q5TGY3 1603 aaPredicted RBP19.98■□□□□ 0.79
LIMS1-201ENST00000332345 TRPM1Q7Z4N2 1603 aa19.97■□□□□ 0.79
LIMS1-201ENST00000332345 ARHGEF28Q8N1W1 1705 aaKnown RBP19.96■□□□□ 0.79
LIMS1-201ENST00000332345 WASLO00401 505 aaPredicted RBP19.96■□□□□ 0.79
LIMS1-201ENST00000332345 LRRC59Q96AG4 307 aaKnown RBP19.96■□□□□ 0.79
LIMS1-201ENST00000332345 FMN2Q9NZ56 1722 aa19.95■□□□□ 0.78
LIMS1-201ENST00000332345 JCADQ9P266 1359 aa19.95■□□□□ 0.78
LIMS1-201ENST00000332345 DDX17Q92841 729 aaKnown RBP19.94■□□□□ 0.78
LIMS1-201ENST00000332345 CENPJQ9HC77 1338 aaPredicted RBP19.94■□□□□ 0.78
LIMS1-201ENST00000332345 EIF3AQ14152 1382 aaKnown RBP19.94■□□□□ 0.78
LIMS1-201ENST00000332345 NPHP3Q7Z494 1330 aa19.93■□□□□ 0.78
LIMS1-201ENST00000332345 ADGRB2O60241 1585 aa19.92■□□□□ 0.78
LIMS1-201ENST00000332345 COL16A1Q07092 1604 aaPredicted RBP19.92■□□□□ 0.78
LIMS1-201ENST00000332345 NHSL1Q5SYE7 1610 aa19.92■□□□□ 0.78
LIMS1-201ENST00000332345 FOXO3O43524 673 aa19.92■□□□□ 0.78
LIMS1-201ENST00000332345 CARD11Q9BXL7 1154 aa19.92■□□□□ 0.78
LIMS1-201ENST00000332345 PHF8Q9UPP1 1060 aa19.91■□□□□ 0.78
LIMS1-201ENST00000332345 CDK19Q9BWU1 502 aa19.9■□□□□ 0.78
LIMS1-201ENST00000332345 SOS2Q07890 1332 aaPredicted RBP19.9■□□□□ 0.78
LIMS1-201ENST00000332345 GPRASP1Q5JY77 1395 aa19.9■□□□□ 0.78
LIMS1-201ENST00000332345 DISP3Q9P2K9 1392 aa19.9■□□□□ 0.78
LIMS1-201ENST00000332345 ANKARQ7Z5J8 1434 aa19.9■□□□□ 0.78
LIMS1-201ENST00000332345 RGPD8O14715 1765 aaPredicted RBP19.9■□□□□ 0.78
LIMS1-201ENST00000332345 SPATA31A6Q5VVP1 1343 aa19.88■□□□□ 0.77
LIMS1-201ENST00000332345 PSME1Q06323 249 aa19.87■□□□□ 0.77
LIMS1-201ENST00000332345 NUDT16Q96DE0 195 aaKnown RBP19.87■□□□□ 0.77
LIMS1-201ENST00000332345 RALGAPBQ86X10 1494 aa19.86■□□□□ 0.77
LIMS1-201ENST00000332345 KRT28Q7Z3Y7 464 aa19.86■□□□□ 0.77
LIMS1-201ENST00000332345 PMFBP1Q8TBY8 1022 aa19.86■□□□□ 0.77
LIMS1-201ENST00000332345 KIF1AQ12756 1690 aa19.85■□□□□ 0.77
LIMS1-201ENST00000332345 MED1Q15648 1581 aaPredicted RBP19.85■□□□□ 0.77
LIMS1-201ENST00000332345 TULP4Q9NRJ4 1543 aa19.85■□□□□ 0.77
LIMS1-201ENST00000332345 PRR36Q9H6K5 1346 aa19.84■□□□□ 0.77
LIMS1-201ENST00000332345 SRPK2P78362 688 aaKnown RBP19.84■□□□□ 0.77
LIMS1-201ENST00000332345 XPCQ01831 940 aaPredicted RBP19.84■□□□□ 0.77
LIMS1-201ENST00000332345 CCDC61Q9Y6R9 512 aa19.84■□□□□ 0.77
LIMS1-201ENST00000332345 EVC2Q86UK5 1308 aa19.83■□□□□ 0.77
LIMS1-201ENST00000332345 SHPRHQ149N8 1683 aa19.83■□□□□ 0.76
LIMS1-201ENST00000332345 QRICH2Q9H0J4 1663 aa19.82■□□□□ 0.76
LIMS1-201ENST00000332345 NGDNQ8NEJ9 315 aaKnown RBP19.82■□□□□ 0.76
LIMS1-201ENST00000332345 USP32Q8NFA0 1604 aa19.82■□□□□ 0.76
LIMS1-201ENST00000332345 NUTM2BA6NNL0 878 aaPredicted RBP19.81■□□□□ 0.76
LIMS1-201ENST00000332345 NUTM2EB1AL46 878 aaPredicted RBP19.81■□□□□ 0.76
LIMS1-201ENST00000332345 ADRA2BP18089 450 aa19.81■□□□□ 0.76
LIMS1-201ENST00000332345 NUTM2AQ8IVF1 878 aaPredicted RBP19.81■□□□□ 0.76
LIMS1-201ENST00000332345 PXDNQ92626 1479 aa19.8■□□□□ 0.76
LIMS1-201ENST00000332345 MEX3CQ5U5Q3 659 aaKnown RBP19.8■□□□□ 0.76
LIMS1-201ENST00000332345 CABP2Q9NPB3 220 aa19.8■□□□□ 0.76
LIMS1-201ENST00000332345 PNPLA6Q8IY17 1366 aa19.8■□□□□ 0.76
LIMS1-201ENST00000332345 SLC24A1O60721 1099 aa19.79■□□□□ 0.76
LIMS1-201ENST00000332345 ITSN1Q15811 1721 aa19.78■□□□□ 0.76
LIMS1-201ENST00000332345 SPATA31A3Q5VYP0 1347 aa19.77■□□□□ 0.76
LIMS1-201ENST00000332345 PLEKHG3A1L390 1219 aa19.77■□□□□ 0.76
LIMS1-201ENST00000332345 ATP7BP35670 1465 aa19.77■□□□□ 0.76
LIMS1-201ENST00000332345 SBNO1A3KN83 1393 aa19.76■□□□□ 0.75
LIMS1-201ENST00000332345 SBNO2Q9Y2G9 1366 aa19.75■□□□□ 0.75
LIMS1-201ENST00000332345 LMOD2Q6P5Q4 547 aa19.75■□□□□ 0.75
LIMS1-201ENST00000332345 ST20-MTHFSA0A0A6YYL1 179 aa19.74■□□□□ 0.75
LIMS1-201ENST00000332345 ACEP12821 1306 aa19.74■□□□□ 0.75
LIMS1-201ENST00000332345 PAK3O75914 559 aaPredicted RBP19.72■□□□□ 0.75
LIMS1-201ENST00000332345 CABP1Q9NZU7 370 aa19.72■□□□□ 0.75
LIMS1-201ENST00000332345 POLR3AO14802 1390 aaPredicted RBP19.71■□□□□ 0.75
LIMS1-201ENST00000332345 ARHGEF10O15013 1369 aa19.71■□□□□ 0.75
LIMS1-201ENST00000332345 TNS3Q68CZ2 1445 aa19.71■□□□□ 0.75
LIMS1-201ENST00000332345 PPIP5K1Q6PFW1 1433 aa19.71■□□□□ 0.75
LIMS1-201ENST00000332345 LRP6O75581 1613 aa19.71■□□□□ 0.75
LIMS1-201ENST00000332345 ADAMTS2O95450 1211 aa19.7■□□□□ 0.74
LIMS1-201ENST00000332345 COL22A1Q8NFW1 1626 aaPredicted RBP19.69■□□□□ 0.74
LIMS1-201ENST00000332345 TOPAZ1Q8N9V7 1692 aa19.69■□□□□ 0.74
LIMS1-201ENST00000332345 PUS7Q96PZ0 661 aaKnown RBP19.69■□□□□ 0.74
LIMS1-201ENST00000332345 RGS17Q9UGC6 210 aaPredicted RBP19.69■□□□□ 0.74
LIMS1-201ENST00000332345 ATAD2Q6PL18 1390 aa19.69■□□□□ 0.74
LIMS1-201ENST00000332345 USP47Q96K76 1375 aa19.69■□□□□ 0.74
LIMS1-201ENST00000332345 HAP1P54257 671 aaPredicted RBP19.68■□□□□ 0.74
LIMS1-201ENST00000332345 ZNF772Q68DY9 489 aaPredicted RBP19.68■□□□□ 0.74
LIMS1-201ENST00000332345 NGLY1Q96IV0 654 aa19.68■□□□□ 0.74
LIMS1-201ENST00000332345 C8orf37Q96NL8 207 aa19.68■□□□□ 0.74
LIMS1-201ENST00000332345 TESK2Q96S53 571 aa19.68■□□□□ 0.74
LIMS1-201ENST00000332345 ZNF692Q9BU19 519 aaPredicted RBP19.68■□□□□ 0.74
LIMS1-201ENST00000332345 BRD4O60885 1362 aaPredicted RBP19.65■□□□□ 0.74
LIMS1-201ENST00000332345 TRPM3Q9HCF6 1732 aaPredicted RBP19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms