RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 EVC2Q86UK5 1308 aa19.17■□□□□ 0.66
TPM3-206ENST00000330188 TRMT2AQ8IZ69 625 aaKnown RBP19.17■□□□□ 0.66
TPM3-206ENST00000330188 CRBNQ96SW2 442 aa19.17■□□□□ 0.66
TPM3-206ENST00000330188 MORC1Q86VD1 984 aa19.16■□□□□ 0.66
TPM3-206ENST00000330188 TSPOAP1O95153 1857 aa19.16■□□□□ 0.66
TPM3-206ENST00000330188 FAM69CQ0P6D2 419 aa19.15■□□□□ 0.66
TPM3-206ENST00000330188 REREQ9P2R6 1566 aa19.14■□□□□ 0.65
TPM3-206ENST00000330188 ANKRD36BQ8N2N9 1353 aa19.14■□□□□ 0.65
TPM3-206ENST00000330188 C20orf194Q5TEA3 1177 aa19.13■□□□□ 0.65
TPM3-206ENST00000330188 NGEFQ8N5V2 710 aa19.13■□□□□ 0.65
TPM3-206ENST00000330188 SPINK5Q9NQ38 1064 aaPredicted RBP19.13■□□□□ 0.65
TPM3-206ENST00000330188 CGNL1Q0VF96 1302 aa19.13■□□□□ 0.65
TPM3-206ENST00000330188 PTPRMP28827 1452 aa19.11■□□□□ 0.65
TPM3-206ENST00000330188 NKTRP30414 1462 aaKnown RBP19.11■□□□□ 0.65
TPM3-206ENST00000330188 TNNT2P45379 298 aaPredicted RBP19.1■□□□□ 0.65
TPM3-206ENST00000330188 AGLP35573 1532 aa19.1■□□□□ 0.65
TPM3-206ENST00000330188 NSD2O96028 1365 aa19.1■□□□□ 0.65
TPM3-206ENST00000330188 FBXO31Q5XUX0 539 aaPredicted RBP19.1■□□□□ 0.65
TPM3-206ENST00000330188 CABP2Q9NPB3 220 aa19.1■□□□□ 0.65
TPM3-206ENST00000330188 E9PSI1 815 aa19.09■□□□□ 0.65
TPM3-206ENST00000330188 TCERG1O14776 1098 aaKnown RBP19.09■□□□□ 0.65
TPM3-206ENST00000330188 CLTCQ00610 1675 aaKnown RBP19.08■□□□□ 0.65
TPM3-206ENST00000330188 SAFB2Q14151 953 aaKnown RBP eCLIP19.08■□□□□ 0.64
TPM3-206ENST00000330188 STK26Q9P289 416 aa19.08■□□□□ 0.64
TPM3-206ENST00000330188 DMRT2Q9Y5R5 561 aa19.08■□□□□ 0.64
TPM3-206ENST00000330188 IQSEC2Q5JU85 1478 aa19.08■□□□□ 0.64
TPM3-206ENST00000330188 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.07■□□□□ 0.64
TPM3-206ENST00000330188 ALKQ9UM73 1620 aa19.07■□□□□ 0.64
TPM3-206ENST00000330188 YTHDC2Q9H6S0 1430 aaKnown RBP19.07■□□□□ 0.64
TPM3-206ENST00000330188 SENP3Q9H4L4 574 aaPredicted RBP19.07■□□□□ 0.64
TPM3-206ENST00000330188 NINLQ9Y2I6 1382 aa19.07■□□□□ 0.64
TPM3-206ENST00000330188 MTHFSP49914 203 aa19.06■□□□□ 0.64
TPM3-206ENST00000330188 ERICH6Q7L0X2 663 aa19.05■□□□□ 0.64
TPM3-206ENST00000330188 A0A1W2PP64 1363 aa19.04■□□□□ 0.64
TPM3-206ENST00000330188 WWC1Q8IX03 1113 aa19.04■□□□□ 0.64
TPM3-206ENST00000330188 PPP6R1Q9UPN7 881 aa19.04■□□□□ 0.64
TPM3-206ENST00000330188 RUNDC1Q96C34 613 aa19.04■□□□□ 0.64
TPM3-206ENST00000330188 SPATA31D1Q6ZQQ2 1576 aa19.04■□□□□ 0.64
TPM3-206ENST00000330188 ABCC11Q96J66 1382 aa19.03■□□□□ 0.64
TPM3-206ENST00000330188 MS4A1P11836 297 aa19.03■□□□□ 0.64
TPM3-206ENST00000330188 CFAP53Q96M91 514 aa19.03■□□□□ 0.64
TPM3-206ENST00000330188 KDM2BQ8NHM5 1336 aa19.02■□□□□ 0.64
TPM3-206ENST00000330188 ATAD2Q6PL18 1390 aa19.02■□□□□ 0.64
TPM3-206ENST00000330188 ANKRD26Q9UPS8 1709 aa19.02■□□□□ 0.64
TPM3-206ENST00000330188 SRPK2P78362 688 aaKnown RBP19.02■□□□□ 0.64
TPM3-206ENST00000330188 PRAM1Q96QH2 718 aa19.02■□□□□ 0.64
TPM3-206ENST00000330188 MINK1Q8N4C8 1332 aaPredicted RBP19.01■□□□□ 0.63
TPM3-206ENST00000330188 A2ML1A8K2U0 1454 aa19■□□□□ 0.63
TPM3-206ENST00000330188 CD163L1Q9NR16 1453 aa19■□□□□ 0.63
TPM3-206ENST00000330188 BCAR3O75815 825 aa19■□□□□ 0.63
TPM3-206ENST00000330188 TCP11L2Q8N4U5 519 aa19■□□□□ 0.63
TPM3-206ENST00000330188 SETD1AO15047 1707 aaKnown RBP18.99■□□□□ 0.63
TPM3-206ENST00000330188 ANP32AP39687 249 aaKnown RBP18.99■□□□□ 0.63
TPM3-206ENST00000330188 POGKQ9P215 609 aa18.99■□□□□ 0.63
TPM3-206ENST00000330188 STAG3Q9UJ98 1225 aa18.99■□□□□ 0.63
TPM3-206ENST00000330188 PDE4AP27815 886 aa18.98■□□□□ 0.63
TPM3-206ENST00000330188 ARHGEF40Q8TER5 1519 aa18.98■□□□□ 0.63
TPM3-206ENST00000330188 ADGRB2O60241 1585 aa18.97■□□□□ 0.63
TPM3-206ENST00000330188 BACH2Q9BYV9 841 aa18.97■□□□□ 0.63
TPM3-206ENST00000330188 NOP58Q9Y2X3 529 aaKnown RBP18.97■□□□□ 0.63
TPM3-206ENST00000330188 RRP7AQ9Y3A4 280 aaKnown RBP18.97■□□□□ 0.63
TPM3-206ENST00000330188 DLC1Q96QB1 1528 aa18.97■□□□□ 0.63
TPM3-206ENST00000330188 MED14O60244 1454 aa18.97■□□□□ 0.63
TPM3-206ENST00000330188 NLRP1Q9C000 1473 aa18.97■□□□□ 0.63
TPM3-206ENST00000330188 CENPQQ7L2Z9 268 aaPredicted RBP18.97■□□□□ 0.63
TPM3-206ENST00000330188 NEUROD2Q15784 382 aa18.96■□□□□ 0.63
TPM3-206ENST00000330188 KIF13AQ9H1H9 1805 aa18.96■□□□□ 0.62
TPM3-206ENST00000330188 CCDC27Q2M243 656 aa18.95■□□□□ 0.62
TPM3-206ENST00000330188 SKAP1Q86WV1 359 aa18.95■□□□□ 0.62
TPM3-206ENST00000330188 IPO9Q96P70 1041 aaKnown RBP18.95■□□□□ 0.62
TPM3-206ENST00000330188 TERF2IPQ9NYB0 399 aa18.95■□□□□ 0.62
TPM3-206ENST00000330188 RIMS2Q9UQ26 1411 aa18.95■□□□□ 0.62
TPM3-206ENST00000330188 WDR63Q8IWG1 891 aa18.95■□□□□ 0.62
TPM3-206ENST00000330188 GGNBP2Q9H3C7 697 aa18.95■□□□□ 0.62
TPM3-206ENST00000330188 COL3A1P02461 1466 aaPredicted RBP18.94■□□□□ 0.62
TPM3-206ENST00000330188 KIF20BQ96Q89 1820 aa18.94■□□□□ 0.62
TPM3-206ENST00000330188 NCBP3Q53F19 620 aaKnown RBP18.94■□□□□ 0.62
TPM3-206ENST00000330188 FYB1O15117 783 aa18.93■□□□□ 0.62
TPM3-206ENST00000330188 CDK19Q9BWU1 502 aa18.93■□□□□ 0.62
TPM3-206ENST00000330188 U2AF1L5P0DN76 240 aaPredicted RBP18.92■□□□□ 0.62
TPM3-206ENST00000330188 U2AF1Q01081 240 aaKnown RBP eCLIP18.92■□□□□ 0.627e-10■■□□□ 13
TPM3-206ENST00000330188 PAK3O75914 559 aaPredicted RBP18.92■□□□□ 0.62
TPM3-206ENST00000330188 MLECQ14165 292 aa18.92■□□□□ 0.62
TPM3-206ENST00000330188 NRXN3Q9Y4C0 1643 aa18.92■□□□□ 0.62
TPM3-206ENST00000330188 PDE3AQ14432 1141 aa18.9■□□□□ 0.62
TPM3-206ENST00000330188 HDGFL2Q7Z4V5 671 aaPredicted RBP18.9■□□□□ 0.62
TPM3-206ENST00000330188 RARSP54136 660 aaKnown RBP18.88■□□□□ 0.61
TPM3-206ENST00000330188 CABP1Q9NZU7 370 aa18.88■□□□□ 0.61
TPM3-206ENST00000330188 WAPLQ7Z5K2 1190 aa18.87■□□□□ 0.61
TPM3-206ENST00000330188 PLEKHF1Q96S99 279 aa18.87■□□□□ 0.61
TPM3-206ENST00000330188 ATP7BP35670 1465 aa18.86■□□□□ 0.61
TPM3-206ENST00000330188 NPM2Q86SE8 214 aaKnown RBP18.86■□□□□ 0.61
TPM3-206ENST00000330188 CANXP27824 592 aaKnown RBP18.85■□□□□ 0.61
TPM3-206ENST00000330188 ZBTB47Q9UFB7 747 aaPredicted RBP18.85■□□□□ 0.61
TPM3-206ENST00000330188 ZMYM3Q14202 1370 aa18.85■□□□□ 0.61
TPM3-206ENST00000330188 U2SURPO15042 1029 aaKnown RBP18.85■□□□□ 0.61
TPM3-206ENST00000330188 PNPLA6Q8IY17 1366 aa18.84■□□□□ 0.61
TPM3-206ENST00000330188 PANK1Q8TE04 598 aa18.84■□□□□ 0.61
TPM3-206ENST00000330188 MYH16Q9H6N6 1097 aa18.84■□□□□ 0.61
TPM3-206ENST00000330188 KNDC1Q76NI1 1749 aa18.83■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms