RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 DCCP43146 1447 aa23.43■■□□□ 1.34
PDLIM1-201ENST00000329399 TONSLQ96HA7 1378 aa23.43■■□□□ 1.34
PDLIM1-201ENST00000329399 PRAM1Q96QH2 718 aa23.43■■□□□ 1.34
PDLIM1-201ENST00000329399 DDX17Q92841 729 aaKnown RBP23.42■■□□□ 1.34
PDLIM1-201ENST00000329399 SIRT1Q96EB6 747 aa23.42■■□□□ 1.34
PDLIM1-201ENST00000329399 ORAI2Q96SN7 254 aa23.4■■□□□ 1.34
PDLIM1-201ENST00000329399 LAMC1P11047 1609 aa23.4■■□□□ 1.34
PDLIM1-201ENST00000329399 NUTM2FA1L443 756 aa23.39■■□□□ 1.34
PDLIM1-201ENST00000329399 KNDC1Q76NI1 1749 aa23.38■■□□□ 1.33
PDLIM1-201ENST00000329399 C1orf167Q5SNV9 1468 aa23.38■■□□□ 1.33
PDLIM1-201ENST00000329399 NBPF8Q3BBV2 869 aa23.36■■□□□ 1.33
PDLIM1-201ENST00000329399 ZNF316A6NFI3 1004 aaPredicted RBP23.36■■□□□ 1.33
PDLIM1-201ENST00000329399 HIRIP3Q9BW71 556 aaPredicted RBP23.34■■□□□ 1.33
PDLIM1-201ENST00000329399 POGKQ9P215 609 aa23.34■■□□□ 1.33
PDLIM1-201ENST00000329399 DLC1Q96QB1 1528 aa23.32■■□□□ 1.32
PDLIM1-201ENST00000329399 MINK1Q8N4C8 1332 aaPredicted RBP23.31■■□□□ 1.32
PDLIM1-201ENST00000329399 CDC42BPGQ6DT37 1551 aa23.29■■□□□ 1.32
PDLIM1-201ENST00000329399 PHLPP1O60346 1717 aa23.29■■□□□ 1.32
PDLIM1-201ENST00000329399 ESCO1Q5FWF5 840 aa23.29■■□□□ 1.32
PDLIM1-201ENST00000329399 COL16A1Q07092 1604 aaPredicted RBP23.28■■□□□ 1.32
PDLIM1-201ENST00000329399 AHDC1Q5TGY3 1603 aaPredicted RBP23.27■■□□□ 1.32
PDLIM1-201ENST00000329399 DISP3Q9P2K9 1392 aa23.27■■□□□ 1.32
PDLIM1-201ENST00000329399 KIAA1210Q9ULL0 1709 aa23.26■■□□□ 1.31
PDLIM1-201ENST00000329399 FOXO3O43524 673 aa23.24■■□□□ 1.31
PDLIM1-201ENST00000329399 ARHGEF28Q8N1W1 1705 aaKnown RBP23.23■■□□□ 1.31
PDLIM1-201ENST00000329399 XPCQ01831 940 aaPredicted RBP23.23■■□□□ 1.31
PDLIM1-201ENST00000329399 MED1Q15648 1581 aaPredicted RBP23.22■■□□□ 1.31
PDLIM1-201ENST00000329399 FMN2Q9NZ56 1722 aa23.22■■□□□ 1.31
PDLIM1-201ENST00000329399 PRR36Q9H6K5 1346 aa23.22■■□□□ 1.31
PDLIM1-201ENST00000329399 NHSL1Q5SYE7 1610 aa23.21■■□□□ 1.31
PDLIM1-201ENST00000329399 JCADQ9P266 1359 aa23.2■■□□□ 1.31
PDLIM1-201ENST00000329399 TRPM1Q7Z4N2 1603 aa23.2■■□□□ 1.3
PDLIM1-201ENST00000329399 WASLO00401 505 aaPredicted RBP23.2■■□□□ 1.3
PDLIM1-201ENST00000329399 RGPD8O14715 1765 aaPredicted RBP23.19■■□□□ 1.3
PDLIM1-201ENST00000329399 SOS2Q07890 1332 aaPredicted RBP23.19■■□□□ 1.3
PDLIM1-201ENST00000329399 ROCK2O75116 1388 aaKnown RBP23.18■■□□□ 1.3
PDLIM1-201ENST00000329399 ILDR2Q71H61 639 aa23.17■■□□□ 1.3
PDLIM1-201ENST00000329399 LRRC59Q96AG4 307 aaKnown RBP23.17■■□□□ 1.3
PDLIM1-201ENST00000329399 ADGRB2O60241 1585 aa23.16■■□□□ 1.3
PDLIM1-201ENST00000329399 USP32Q8NFA0 1604 aa23.16■■□□□ 1.3
PDLIM1-201ENST00000329399 PMFBP1Q8TBY8 1022 aa23.16■■□□□ 1.3
PDLIM1-201ENST00000329399 CDK19Q9BWU1 502 aa23.16■■□□□ 1.3
PDLIM1-201ENST00000329399 RGS17Q9UGC6 210 aaPredicted RBP23.16■■□□□ 1.3
PDLIM1-201ENST00000329399 PHF8Q9UPP1 1060 aa23.16■■□□□ 1.3
PDLIM1-201ENST00000329399 CENPJQ9HC77 1338 aaPredicted RBP23.14■■□□□ 1.29
PDLIM1-201ENST00000329399 GPRASP1Q5JY77 1395 aa23.13■■□□□ 1.29
PDLIM1-201ENST00000329399 LRP6O75581 1613 aa23.13■■□□□ 1.29
PDLIM1-201ENST00000329399 PXDNQ92626 1479 aa23.13■■□□□ 1.29
PDLIM1-201ENST00000329399 NPHP3Q7Z494 1330 aa23.12■■□□□ 1.29
PDLIM1-201ENST00000329399 NUTM2BA6NNL0 878 aaPredicted RBP23.12■■□□□ 1.29
PDLIM1-201ENST00000329399 NUTM2EB1AL46 878 aaPredicted RBP23.12■■□□□ 1.29
PDLIM1-201ENST00000329399 NUTM2AQ8IVF1 878 aaPredicted RBP23.12■■□□□ 1.29
PDLIM1-201ENST00000329399 PNPLA6Q8IY17 1366 aa23.12■■□□□ 1.29
PDLIM1-201ENST00000329399 NUDT16Q96DE0 195 aaKnown RBP23.11■■□□□ 1.29
PDLIM1-201ENST00000329399 KRT28Q7Z3Y7 464 aa23.11■■□□□ 1.29
PDLIM1-201ENST00000329399 CARD11Q9BXL7 1154 aa23.11■■□□□ 1.29
PDLIM1-201ENST00000329399 ANKARQ7Z5J8 1434 aa23.1■■□□□ 1.29
PDLIM1-201ENST00000329399 TULP4Q9NRJ4 1543 aa23.08■■□□□ 1.29
PDLIM1-201ENST00000329399 SPATA31A6Q5VVP1 1343 aa23.08■■□□□ 1.29
PDLIM1-201ENST00000329399 CABP2Q9NPB3 220 aa23.08■■□□□ 1.29
PDLIM1-201ENST00000329399 SHPRHQ149N8 1683 aa23.08■■□□□ 1.28
PDLIM1-201ENST00000329399 RALGAPBQ86X10 1494 aa23.07■■□□□ 1.28
PDLIM1-201ENST00000329399 DIEXFQ68CQ4 756 aaKnown RBP23.07■■□□□ 1.28
PDLIM1-201ENST00000329399 ATP7BP35670 1465 aa23.06■■□□□ 1.28
PDLIM1-201ENST00000329399 PHF23Q9BUL5 403 aaPredicted RBP23.05■■□□□ 1.28
PDLIM1-201ENST00000329399 PSME1Q06323 249 aa23.05■■□□□ 1.28
PDLIM1-201ENST00000329399 SPATA31A3Q5VYP0 1347 aa23.03■■□□□ 1.28
PDLIM1-201ENST00000329399 QRICH2Q9H0J4 1663 aa23.03■■□□□ 1.28
PDLIM1-201ENST00000329399 SRPK2P78362 688 aaKnown RBP23.02■■□□□ 1.28
PDLIM1-201ENST00000329399 POTEAQ6S8J7 498 aa23.02■■□□□ 1.28
PDLIM1-201ENST00000329399 KIF1AQ12756 1690 aa23.02■■□□□ 1.28
PDLIM1-201ENST00000329399 CCDC61Q9Y6R9 512 aa23.01■■□□□ 1.27
PDLIM1-201ENST00000329399 EIF3AQ14152 1382 aaKnown RBP23■■□□□ 1.27
PDLIM1-201ENST00000329399 ADAMTS2O95450 1211 aa23■■□□□ 1.27
PDLIM1-201ENST00000329399 NGDNQ8NEJ9 315 aaKnown RBP23■■□□□ 1.27
PDLIM1-201ENST00000329399 PLEKHG5O94827 1062 aa22.99■■□□□ 1.27
PDLIM1-201ENST00000329399 PLEKHG3A1L390 1219 aa22.98■■□□□ 1.27
PDLIM1-201ENST00000329399 MEX3CQ5U5Q3 659 aaKnown RBP22.98■■□□□ 1.27
PDLIM1-201ENST00000329399 CABLES1Q8TDN4 633 aa22.98■■□□□ 1.27
PDLIM1-201ENST00000329399 ACEP12821 1306 aa22.97■■□□□ 1.27
PDLIM1-201ENST00000329399 ST20-MTHFSA0A0A6YYL1 179 aa22.97■■□□□ 1.27
PDLIM1-201ENST00000329399 CABP1Q9NZU7 370 aa22.97■■□□□ 1.27
PDLIM1-201ENST00000329399 EIF4G2P78344 907 aaKnown RBP eCLIP22.96■■□□□ 1.27
PDLIM1-201ENST00000329399 LMOD2Q6P5Q4 547 aa22.96■■□□□ 1.27
PDLIM1-201ENST00000329399 EVC2Q86UK5 1308 aa22.96■■□□□ 1.27
PDLIM1-201ENST00000329399 SBNO1A3KN83 1393 aa22.96■■□□□ 1.27
PDLIM1-201ENST00000329399 C8orf37Q96NL8 207 aa22.95■■□□□ 1.26
PDLIM1-201ENST00000329399 TESK2Q96S53 571 aa22.94■■□□□ 1.26
PDLIM1-201ENST00000329399 TNS3Q68CZ2 1445 aa22.94■■□□□ 1.26
PDLIM1-201ENST00000329399 POLR3AO14802 1390 aaPredicted RBP22.93■■□□□ 1.26
PDLIM1-201ENST00000329399 PPIP5K1Q6PFW1 1433 aa22.93■■□□□ 1.26
PDLIM1-201ENST00000329399 COL22A1Q8NFW1 1626 aaPredicted RBP22.93■■□□□ 1.26
PDLIM1-201ENST00000329399 TOPAZ1Q8N9V7 1692 aa22.92■■□□□ 1.26
PDLIM1-201ENST00000329399 TRPM3Q9HCF6 1732 aaPredicted RBP22.92■■□□□ 1.26
PDLIM1-201ENST00000329399 AFF2P51816 1311 aa22.92■■□□□ 1.26
PDLIM1-201ENST00000329399 PAK3O75914 559 aaPredicted RBP22.92■■□□□ 1.26
PDLIM1-201ENST00000329399 SBNO2Q9Y2G9 1366 aa22.89■■□□□ 1.26
PDLIM1-201ENST00000329399 NUTM2GQ5VZR2 741 aa22.89■■□□□ 1.25
PDLIM1-201ENST00000329399 NGLY1Q96IV0 654 aa22.88■■□□□ 1.25
PDLIM1-201ENST00000329399 ITSN1Q15811 1721 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms