RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 U2AF1L5P0DN76 240 aaPredicted RBP25.51■■□□□ 1.67
CRLF3-201ENST00000324238 U2AF1Q01081 240 aaKnown RBP eCLIP25.51■■□□□ 1.67
CRLF3-201ENST00000324238 TSR2Q969E8 191 aaKnown RBP25.51■■□□□ 1.67
CRLF3-201ENST00000324238 KDM5AP29375 1690 aaKnown RBP25.5■■□□□ 1.67
CRLF3-201ENST00000324238 STAC3Q96MF2 364 aa25.5■■□□□ 1.67
CRLF3-201ENST00000324238 RUNDC1Q96C34 613 aa25.5■■□□□ 1.67
CRLF3-201ENST00000324238 CEP152O94986 1710 aa25.49■■□□□ 1.67
CRLF3-201ENST00000324238 PDZRN3Q9UPQ7 1066 aa25.47■■□□□ 1.67
CRLF3-201ENST00000324238 ABCA6Q8N139 1617 aa25.47■■□□□ 1.67
CRLF3-201ENST00000324238 TET3O43151 1660 aa25.46■■□□□ 1.67
CRLF3-201ENST00000324238 U2SURPO15042 1029 aaKnown RBP25.45■■□□□ 1.66
CRLF3-201ENST00000324238 POGKQ9P215 609 aa25.45■■□□□ 1.66
CRLF3-201ENST00000324238 C14orf93Q9H972 538 aaKnown RBP25.44■■□□□ 1.66
CRLF3-201ENST00000324238 CD109Q6YHK3 1445 aa25.44■■□□□ 1.66
CRLF3-201ENST00000324238 POLR3AO14802 1390 aaPredicted RBP25.44■■□□□ 1.66
CRLF3-201ENST00000324238 SRPK2P78362 688 aaKnown RBP25.44■■□□□ 1.66
CRLF3-201ENST00000324238 NPATQ14207 1427 aa25.43■■□□□ 1.66
CRLF3-201ENST00000324238 OSCARQ8IYS5 282 aa25.43■■□□□ 1.66
CRLF3-201ENST00000324238 GGNBP2Q9H3C7 697 aa25.43■■□□□ 1.66
CRLF3-201ENST00000324238 MINK1Q8N4C8 1332 aaPredicted RBP25.41■■□□□ 1.66
CRLF3-201ENST00000324238 MAP3K4Q9Y6R4 1608 aa25.4■■□□□ 1.66
CRLF3-201ENST00000324238 INO80Q9ULG1 1556 aaPredicted RBP25.4■■□□□ 1.66
CRLF3-201ENST00000324238 FBLN1P23142 703 aa25.4■■□□□ 1.66
CRLF3-201ENST00000324238 IDI1Q13907 227 aa25.4■■□□□ 1.66
CRLF3-201ENST00000324238 MROH1Q8NDA8 1641 aa25.38■■□□□ 1.65
CRLF3-201ENST00000324238 MAPK8IP3Q9UPT6 1336 aa25.38■■□□□ 1.65
CRLF3-201ENST00000324238 FTSJ3Q8IY81 847 aaKnown RBP25.37■■□□□ 1.65
CRLF3-201ENST00000324238 CFAP53Q96M91 514 aa25.37■■□□□ 1.65
CRLF3-201ENST00000324238 ABCA9Q8IUA7 1624 aa25.36■■□□□ 1.65
CRLF3-201ENST00000324238 PPRC1Q5VV67 1664 aaKnown RBP25.36■■□□□ 1.65
CRLF3-201ENST00000324238 DEPDC5O75140 1603 aa25.36■■□□□ 1.65
CRLF3-201ENST00000324238 MROH2AA6NES4 1674 aa25.35■■□□□ 1.65
CRLF3-201ENST00000324238 FBXO31Q5XUX0 539 aaPredicted RBP25.35■■□□□ 1.65
CRLF3-201ENST00000324238 EXOSC9Q06265 439 aaKnown RBP25.35■■□□□ 1.65
CRLF3-201ENST00000324238 PMFBP1Q8TBY8 1022 aa25.35■■□□□ 1.65
CRLF3-201ENST00000324238 EFCAB6Q5THR3 1501 aa25.34■■□□□ 1.65
CRLF3-201ENST00000324238 ZNF518AQ6AHZ1 1483 aa25.34■■□□□ 1.65
CRLF3-201ENST00000324238 KIDINS220Q9ULH0 1771 aa25.34■■□□□ 1.65
CRLF3-201ENST00000324238 VWDEQ8N2E2 1590 aa25.34■■□□□ 1.65
CRLF3-201ENST00000324238 SLC24A1O60721 1099 aa25.33■■□□□ 1.65
CRLF3-201ENST00000324238 SMC4Q9NTJ3 1288 aa25.33■■□□□ 1.65
CRLF3-201ENST00000324238 WDR63Q8IWG1 891 aa25.32■■□□□ 1.64
CRLF3-201ENST00000324238 MFAP1P55081 439 aaKnown RBP25.32■■□□□ 1.64
CRLF3-201ENST00000324238 MLECQ14165 292 aa25.32■■□□□ 1.64
CRLF3-201ENST00000324238 BECN1Q14457 450 aa25.32■■□□□ 1.64
CRLF3-201ENST00000324238 TBC1D2Q9BYX2 928 aa25.32■■□□□ 1.64
CRLF3-201ENST00000324238 ARAP3Q8WWN8 1544 aa25.31■■□□□ 1.64
CRLF3-201ENST00000324238 MYOM2P54296 1465 aa25.31■■□□□ 1.64
CRLF3-201ENST00000324238 VGFO15240 615 aaPredicted RBP25.31■■□□□ 1.64
CRLF3-201ENST00000324238 ITPRIPQ8IWB1 547 aa25.31■■□□□ 1.64
CRLF3-201ENST00000324238 PHF23Q9BUL5 403 aaPredicted RBP25.31■■□□□ 1.64
CRLF3-201ENST00000324238 RWDD1Q9H446 243 aaPredicted RBP25.31■■□□□ 1.64
CRLF3-201ENST00000324238 EVC2Q86UK5 1308 aa25.3■■□□□ 1.64
CRLF3-201ENST00000324238 KIF1BO60333 1816 aa25.3■■□□□ 1.64
CRLF3-201ENST00000324238 NGEFQ8N5V2 710 aa25.3■■□□□ 1.64
CRLF3-201ENST00000324238 STAG3Q9UJ98 1225 aa25.3■■□□□ 1.64
CRLF3-201ENST00000324238 CYB5RLQ6IPT4 315 aa25.3■■□□□ 1.64
CRLF3-201ENST00000324238 UPF2Q9HAU5 1272 aaKnown RBP25.29■■□□□ 1.64
CRLF3-201ENST00000324238 MVPQ14764 893 aaKnown RBP25.29■■□□□ 1.64
CRLF3-201ENST00000324238 DZIP1LQ8IYY4 767 aaKnown RBP25.29■■□□□ 1.64
CRLF3-201ENST00000324238 GZF1Q9H116 711 aaPredicted RBP25.29■■□□□ 1.64
CRLF3-201ENST00000324238 MYH16Q9H6N6 1097 aa25.29■■□□□ 1.64
CRLF3-201ENST00000324238 ZKSCAN2Q63HK3 967 aa25.28■■□□□ 1.64
CRLF3-201ENST00000324238 SSH1Q8WYL5 1049 aa25.28■■□□□ 1.64
CRLF3-201ENST00000324238 PRAM1Q96QH2 718 aa25.28■■□□□ 1.64
CRLF3-201ENST00000324238 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.27■■□□□ 1.64
CRLF3-201ENST00000324238 TRIM27P14373 513 aa25.26■■□□□ 1.63
CRLF3-201ENST00000324238 TBC1D32Q96NH3 1257 aa25.26■■□□□ 1.63
CRLF3-201ENST00000324238 SHPRHQ149N8 1683 aa25.26■■□□□ 1.63
CRLF3-201ENST00000324238 POGZQ7Z3K3 1410 aa25.24■■□□□ 1.63
CRLF3-201ENST00000324238 NOB1Q9ULX3 412 aaKnown RBP25.24■■□□□ 1.63
CRLF3-201ENST00000324238 NLRP1Q9C000 1473 aa25.24■■□□□ 1.63
CRLF3-201ENST00000324238 KIAA1210Q9ULL0 1709 aa25.23■■□□□ 1.63
CRLF3-201ENST00000324238 SBNO2Q9Y2G9 1366 aa25.23■■□□□ 1.63
CRLF3-201ENST00000324238 TMPOP42166 694 aaKnown RBP25.23■■□□□ 1.63
CRLF3-201ENST00000324238 ANTXR1Q9H6X2 564 aa25.23■■□□□ 1.63
CRLF3-201ENST00000324238 TRIM35Q9UPQ4 493 aa25.22■■□□□ 1.63
CRLF3-201ENST00000324238 IQSEC2Q5JU85 1478 aa25.22■■□□□ 1.63
CRLF3-201ENST00000324238 NINLQ9Y2I6 1382 aa25.22■■□□□ 1.63
CRLF3-201ENST00000324238 EIF5BO60841 1220 aaKnown RBP25.21■■□□□ 1.63
CRLF3-201ENST00000324238 RIPK4P57078 832 aa25.2■■□□□ 1.63
CRLF3-201ENST00000324238 TMEM57Q8N5G2 664 aa25.2■■□□□ 1.62
CRLF3-201ENST00000324238 WAPLQ7Z5K2 1190 aa25.19■■□□□ 1.62
CRLF3-201ENST00000324238 NRXN1Q9ULB1 1477 aa25.19■■□□□ 1.62
CRLF3-201ENST00000324238 ADGRB3O60242 1522 aa25.19■■□□□ 1.62
CRLF3-201ENST00000324238 THUMPD2Q9BTF0 503 aaKnown RBP25.18■■□□□ 1.62
CRLF3-201ENST00000324238 CABP1Q9NZU7 370 aa25.18■■□□□ 1.62
CRLF3-201ENST00000324238 FRMPD1Q5SYB0 1578 aa25.18■■□□□ 1.62
CRLF3-201ENST00000324238 ELL2O00472 640 aaPredicted RBP25.18■■□□□ 1.62
CRLF3-201ENST00000324238 CCDC27Q2M243 656 aa25.17■■□□□ 1.62
CRLF3-201ENST00000324238 C22orf23Q9BZE7 217 aa25.17■■□□□ 1.62
CRLF3-201ENST00000324238 YEATS2Q9ULM3 1422 aa25.17■■□□□ 1.62
CRLF3-201ENST00000324238 QRICH2Q9H0J4 1663 aa25.17■■□□□ 1.62
CRLF3-201ENST00000324238 A0A1W2PP64 1363 aa25.17■■□□□ 1.62
CRLF3-201ENST00000324238 LNPKQ9C0E8 428 aa25.17■■□□□ 1.62
CRLF3-201ENST00000324238 PLEKHF1Q96S99 279 aa25.16■■□□□ 1.62
CRLF3-201ENST00000324238 ADGRB1O14514 1584 aa25.16■■□□□ 1.62
CRLF3-201ENST00000324238 FYB1O15117 783 aa25.15■■□□□ 1.62
CRLF3-201ENST00000324238 C1orf115Q9H7X2 142 aa25.15■■□□□ 1.62
CRLF3-201ENST00000324238 RPGRIP1LQ68CZ1 1315 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 155.1 ms