RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 KIAA0754O94854 1291 aa18.59■□□□□ 0.57
HCFC1-201ENST00000310441 FILIP1LQ4L180 1135 aa18.59■□□□□ 0.57
HCFC1-201ENST00000310441 SYCP1Q15431 976 aa18.59■□□□□ 0.57
HCFC1-201ENST00000310441 TAF3Q5VWG9 929 aa18.59■□□□□ 0.57
HCFC1-201ENST00000310441 CCDC146Q8IYE0 955 aa18.59■□□□□ 0.57
HCFC1-201ENST00000310441 KINO60870 393 aaKnown RBP18.58■□□□□ 0.56
HCFC1-201ENST00000310441 MRE11P49959 708 aa18.57■□□□□ 0.56
HCFC1-201ENST00000310441 ZFYVE27Q5T4F4 411 aa18.57■□□□□ 0.56
HCFC1-201ENST00000310441 MAGEC2Q9UBF1 373 aaPredicted RBP18.57■□□□□ 0.56
HCFC1-201ENST00000310441 HIP1O00291 1037 aa18.57■□□□□ 0.56
HCFC1-201ENST00000310441 SEPT7Q16181 437 aaKnown RBP18.57■□□□□ 0.56
HCFC1-201ENST00000310441 PDS5BQ9NTI5 1447 aa18.56■□□□□ 0.56
HCFC1-201ENST00000310441 FBXO3Q9UK99 471 aa18.56■□□□□ 0.56
HCFC1-201ENST00000310441 WASHC2CQ9Y4E1 1318 aa18.56■□□□□ 0.56
HCFC1-201ENST00000310441 SLC3A2P08195 630 aaKnown RBP18.56■□□□□ 0.56
HCFC1-201ENST00000310441 ZNHIT6Q9NWK9 470 aaKnown RBP18.56■□□□□ 0.56
HCFC1-201ENST00000310441 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.56■□□□□ 0.56
HCFC1-201ENST00000310441 RAD21O60216 631 aa18.55■□□□□ 0.56
HCFC1-201ENST00000310441 EIF3JO75822 258 aaKnown RBP18.55■□□□□ 0.56
HCFC1-201ENST00000310441 VPS37CA5D8V6 355 aaPredicted RBP18.55■□□□□ 0.56
HCFC1-201ENST00000310441 EVA1CP58658 441 aa18.54■□□□□ 0.56
HCFC1-201ENST00000310441 JMYQ8N9B5 988 aa18.54■□□□□ 0.56
HCFC1-201ENST00000310441 FOXD4L6Q3SYB3 417 aaPredicted RBP18.54■□□□□ 0.56
HCFC1-201ENST00000310441 FOXD4L3Q6VB84 417 aaPredicted RBP18.54■□□□□ 0.56
HCFC1-201ENST00000310441 SDF4Q9BRK5 362 aa18.53■□□□□ 0.56
HCFC1-201ENST00000310441 CT47B1P0C2W7 299 aaPredicted RBP18.53■□□□□ 0.56
HCFC1-201ENST00000310441 DESP17661 470 aa18.52■□□□□ 0.56
HCFC1-201ENST00000310441 STIM1Q13586 685 aa18.52■□□□□ 0.56
HCFC1-201ENST00000310441 PDIA4P13667 645 aaKnown RBP18.52■□□□□ 0.56
HCFC1-201ENST00000310441 GBP2P32456 591 aaPredicted RBP18.52■□□□□ 0.56
HCFC1-201ENST00000310441 TSPYL1Q9H0U9 437 aa18.52■□□□□ 0.55
HCFC1-201ENST00000310441 CCAR1Q8IX12 1150 aaKnown RBP18.51■□□□□ 0.55
HCFC1-201ENST00000310441 DZIP1LQ8IYY4 767 aaKnown RBP18.51■□□□□ 0.55
HCFC1-201ENST00000310441 ERLIN1O75477 346 aa18.51■□□□□ 0.55
HCFC1-201ENST00000310441 ZNF396Q96N95 335 aaPredicted RBP18.51■□□□□ 0.55
HCFC1-201ENST00000310441 DACH1Q9UI36 760 aa18.51■□□□□ 0.55
HCFC1-201ENST00000310441 CDK5RAP3Q96JB5 506 aa18.51■□□□□ 0.55
HCFC1-201ENST00000310441 AXDND1Q5T1B0 1012 aaPredicted RBP18.51■□□□□ 0.55
HCFC1-201ENST00000310441 ABCC8Q09428 1581 aa18.5■□□□□ 0.55
HCFC1-201ENST00000310441 PDILTQ8N807 584 aa18.5■□□□□ 0.55
HCFC1-201ENST00000310441 CNTROBQ8N137 903 aa18.5■□□□□ 0.55
HCFC1-201ENST00000310441 SCAPERQ9BY12 1400 aa18.5■□□□□ 0.55
HCFC1-201ENST00000310441 USP47Q96K76 1375 aa18.5■□□□□ 0.55
HCFC1-201ENST00000310441 VGFO15240 615 aaPredicted RBP18.49■□□□□ 0.55
HCFC1-201ENST00000310441 RBM33Q96EV2 1170 aaKnown RBP18.49■□□□□ 0.55
HCFC1-201ENST00000310441 TRIM5Q9C035 493 aa18.48■□□□□ 0.55
HCFC1-201ENST00000310441 TRIM21P19474 475 aaKnown RBP18.48■□□□□ 0.55
HCFC1-201ENST00000310441 NEFHP12036 1026 aa18.48■□□□□ 0.55
HCFC1-201ENST00000310441 STK11IPQ8N1F8 1099 aa18.47■□□□□ 0.55
HCFC1-201ENST00000310441 ENOX2Q16206 610 aaKnown RBP18.47■□□□□ 0.55
HCFC1-201ENST00000310441 FOXD1Q16676 465 aa18.47■□□□□ 0.55
HCFC1-201ENST00000310441 DYDC1Q8WWB3 177 aa18.46■□□□□ 0.55
HCFC1-201ENST00000310441 LTV1Q96GA3 475 aaPredicted RBP18.46■□□□□ 0.55
HCFC1-201ENST00000310441 C22orf23Q9BZE7 217 aa18.46■□□□□ 0.55
HCFC1-201ENST00000310441 KIF3BO15066 747 aa18.45■□□□□ 0.54
HCFC1-201ENST00000310441 CDC45O75419 566 aa18.45■□□□□ 0.54
HCFC1-201ENST00000310441 ANKRD1Q15327 319 aa18.44■□□□□ 0.54
HCFC1-201ENST00000310441 GNAI1P63096 354 aa18.44■□□□□ 0.54
HCFC1-201ENST00000310441 TSPY26PQ9H489 355 aa18.44■□□□□ 0.54
HCFC1-201ENST00000310441 PAF1Q8N7H5 531 aa18.44■□□□□ 0.54
HCFC1-201ENST00000310441 STAC3Q96MF2 364 aa18.44■□□□□ 0.54
HCFC1-201ENST00000310441 TBC1D2BQ9UPU7 963 aa18.44■□□□□ 0.54
HCFC1-201ENST00000310441 SMC2O95347 1197 aa18.43■□□□□ 0.54
HCFC1-201ENST00000310441 DNAI2Q9GZS0 605 aa18.43■□□□□ 0.54
HCFC1-201ENST00000310441 AEBP2Q6ZN18 517 aaPredicted RBP18.43■□□□□ 0.54
HCFC1-201ENST00000310441 TOP2AP11388 1531 aaKnown RBP18.43■□□□□ 0.54
HCFC1-201ENST00000310441 FEZ1Q99689 392 aa18.42■□□□□ 0.54
HCFC1-201ENST00000310441 RAPGEF2Q9Y4G8 1499 aa18.42■□□□□ 0.54
HCFC1-201ENST00000310441 PANK3Q9H999 370 aa18.42■□□□□ 0.54
HCFC1-201ENST00000310441 CBFA2T2O43439 604 aa18.42■□□□□ 0.54
HCFC1-201ENST00000310441 FKBP5Q13451 457 aaPredicted RBP18.42■□□□□ 0.54
HCFC1-201ENST00000310441 CRBNQ96SW2 442 aa18.42■□□□□ 0.54
HCFC1-201ENST00000310441 CCDC192P0DO97 292 aa18.42■□□□□ 0.54
HCFC1-201ENST00000310441 SLC26A8Q96RN1 970 aa18.42■□□□□ 0.54
HCFC1-201ENST00000310441 ERC1Q8IUD2 1116 aa18.41■□□□□ 0.54
HCFC1-201ENST00000310441 L3MBTL2Q969R5 705 aa18.41■□□□□ 0.54
HCFC1-201ENST00000310441 RUNDC1Q96C34 613 aa18.41■□□□□ 0.54
HCFC1-201ENST00000310441 DEF6Q9H4E7 631 aa18.41■□□□□ 0.54
HCFC1-201ENST00000310441 CCDC181Q5TID7 509 aa18.41■□□□□ 0.54
HCFC1-201ENST00000310441 DIAPH1O60610 1272 aaKnown RBP18.4■□□□□ 0.54
HCFC1-201ENST00000310441 SOGA1O94964 1423 aa18.4■□□□□ 0.54
HCFC1-201ENST00000310441 SMG6Q86US8 1419 aaKnown RBP18.4■□□□□ 0.54
HCFC1-201ENST00000310441 PPFIBP1Q86W92 1011 aa18.4■□□□□ 0.54
HCFC1-201ENST00000310441 HSP90AB3PQ58FF7 597 aa18.4■□□□□ 0.54
HCFC1-201ENST00000310441 TMEM132AQ24JP5 1023 aa18.4■□□□□ 0.54
HCFC1-201ENST00000310441 CCDC91Q7Z6B0 441 aa18.39■□□□□ 0.54
HCFC1-201ENST00000310441 RRP7AQ9Y3A4 280 aaKnown RBP18.39■□□□□ 0.54
HCFC1-201ENST00000310441 MCM3P25205 808 aa18.39■□□□□ 0.53
HCFC1-201ENST00000310441 AEBP1Q8IUX7 1158 aa18.38■□□□□ 0.53
HCFC1-201ENST00000310441 COG6Q9Y2V7 657 aa18.38■□□□□ 0.53
HCFC1-201ENST00000310441 WIZO95785 1651 aa18.37■□□□□ 0.53
HCFC1-201ENST00000310441 KRT18P05783 430 aaKnown RBP18.37■□□□□ 0.53
HCFC1-201ENST00000310441 FBXW7Q969H0 707 aa18.37■□□□□ 0.53
HCFC1-201ENST00000310441 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.36■□□□□ 0.531e-6■■■■□ 20.9
HCFC1-201ENST00000310441 RRBP1Q9P2E9 1410 aaKnown RBP18.36■□□□□ 0.53
HCFC1-201ENST00000310441 CLASRPQ8N2M8 674 aaKnown RBP18.36■□□□□ 0.53
HCFC1-201ENST00000310441 KIF2AO00139 706 aaPredicted RBP18.36■□□□□ 0.53
HCFC1-201ENST00000310441 UBTFL1P0CB47 393 aaPredicted RBP18.36■□□□□ 0.53
HCFC1-201ENST00000310441 EIF2S2P20042 333 aaKnown RBP18.36■□□□□ 0.53
HCFC1-201ENST00000310441 PDCL2Q8N4E4 241 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms