RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 HSP90AA1P07900 732 aaKnown RBP14.12□□□□□ -0.15
LSM3-201ENST00000306024 KTN1Q86UP2 1357 aaKnown RBP14.12□□□□□ -0.15
LSM3-201ENST00000306024 TMEM2Q9UHN6 1383 aa14.12□□□□□ -0.15
LSM3-201ENST00000306024 LTKP29376 864 aa14.12□□□□□ -0.15
LSM3-201ENST00000306024 TERF2IPQ9NYB0 399 aa14.12□□□□□ -0.15
LSM3-201ENST00000306024 PRKRIP1Q9H875 184 aaPredicted RBP14.11□□□□□ -0.15
LSM3-201ENST00000306024 HSPA2P54652 639 aa14.1□□□□□ -0.15
LSM3-201ENST00000306024 TESK2Q96S53 571 aa14.1□□□□□ -0.15
LSM3-201ENST00000306024 SLC12A5Q9H2X9 1139 aa14.1□□□□□ -0.15
LSM3-201ENST00000306024 PNNQ9H307 717 aaKnown RBP14.1□□□□□ -0.15
LSM3-201ENST00000306024 AMOTL2Q9Y2J4 779 aa14.1□□□□□ -0.15
LSM3-201ENST00000306024 GPRASP1Q5JY77 1395 aa14.1□□□□□ -0.15
LSM3-201ENST00000306024 ZC3H13Q5T200 1668 aaKnown RBP14.1□□□□□ -0.15
LSM3-201ENST00000306024 REREQ9P2R6 1566 aa14.1□□□□□ -0.15
LSM3-201ENST00000306024 MORC1Q86VD1 984 aa14.1□□□□□ -0.15
LSM3-201ENST00000306024 DISP3Q9P2K9 1392 aa14.09□□□□□ -0.15
LSM3-201ENST00000306024 CDK19Q9BWU1 502 aa14.09□□□□□ -0.15
LSM3-201ENST00000306024 FAM43AQ8N2R8 423 aa14.09□□□□□ -0.15
LSM3-201ENST00000306024 PODXL2Q9NZ53 605 aa14.09□□□□□ -0.15
LSM3-201ENST00000306024 WDR43Q15061 677 aaKnown RBP eCLIP14.08□□□□□ -0.16
LSM3-201ENST00000306024 RALBP1Q15311 655 aa14.08□□□□□ -0.16
LSM3-201ENST00000306024 MYOM2P54296 1465 aa14.08□□□□□ -0.16
LSM3-201ENST00000306024 LMOD2Q6P5Q4 547 aa14.07□□□□□ -0.16
LSM3-201ENST00000306024 NGDNQ8NEJ9 315 aaKnown RBP14.07□□□□□ -0.16
LSM3-201ENST00000306024 A2ML1A8K2U0 1454 aa14.07□□□□□ -0.16
LSM3-201ENST00000306024 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.07□□□□□ -0.16
LSM3-201ENST00000306024 ZMYND15Q9H091 742 aa14.07□□□□□ -0.16
LSM3-201ENST00000306024 NLRP1Q9C000 1473 aa14.07□□□□□ -0.16
LSM3-201ENST00000306024 PROSER2Q86WR7 435 aaPredicted RBP14.06□□□□□ -0.16
LSM3-201ENST00000306024 RBM33Q96EV2 1170 aaKnown RBP14.06□□□□□ -0.16
LSM3-201ENST00000306024 ADGRB3O60242 1522 aa14.06□□□□□ -0.16
LSM3-201ENST00000306024 SOX12O15370 315 aa14.05□□□□□ -0.16
LSM3-201ENST00000306024 EXOC6Q8TAG9 804 aa14.05□□□□□ -0.16
LSM3-201ENST00000306024 NCKAP5LQ9HCH0 1330 aa14.05□□□□□ -0.16
LSM3-201ENST00000306024 SYNMO15061 1565 aa14.05□□□□□ -0.16
LSM3-201ENST00000306024 PIK3C2GO75747 1445 aa14.05□□□□□ -0.16
LSM3-201ENST00000306024 YTHDC2Q9H6S0 1430 aaKnown RBP14.05□□□□□ -0.16
LSM3-201ENST00000306024 PREX1Q8TCU6 1659 aa14.05□□□□□ -0.16
LSM3-201ENST00000306024 TBX22Q9Y458 520 aa14.04□□□□□ -0.16
LSM3-201ENST00000306024 CABP1Q9NZU7 370 aa14.04□□□□□ -0.16
LSM3-201ENST00000306024 L1TD1Q5T7N2 865 aaKnown RBP14.03□□□□□ -0.16
LSM3-201ENST00000306024 CFAP53Q96M91 514 aa14.03□□□□□ -0.16
LSM3-201ENST00000306024 CGNL1Q0VF96 1302 aa14.02□□□□□ -0.16
LSM3-201ENST00000306024 ZBTB7CA1YPR0 619 aa14.02□□□□□ -0.16
LSM3-201ENST00000306024 BACH2Q9BYV9 841 aa14.02□□□□□ -0.17
LSM3-201ENST00000306024 NLRP13Q86W25 1043 aa14.01□□□□□ -0.17
LSM3-201ENST00000306024 MS4A1P11836 297 aa14.01□□□□□ -0.17
LSM3-201ENST00000306024 LRPPRCP42704 1394 aaKnown RBP14□□□□□ -0.17
LSM3-201ENST00000306024 FRAT2O75474 233 aaPredicted RBP14□□□□□ -0.17
LSM3-201ENST00000306024 WASLO00401 505 aaPredicted RBP14□□□□□ -0.17
LSM3-201ENST00000306024 PMFBP1Q8TBY8 1022 aa14□□□□□ -0.17
LSM3-201ENST00000306024 ZFYVE9O95405 1425 aa14□□□□□ -0.17
LSM3-201ENST00000306024 SPATA31D1Q6ZQQ2 1576 aa14□□□□□ -0.17
LSM3-201ENST00000306024 BCORL1Q5H9F3 1711 aa14□□□□□ -0.17
LSM3-201ENST00000306024 ATAD2Q6PL18 1390 aa14□□□□□ -0.17
LSM3-201ENST00000306024 MYBBP1AQ9BQG0 1328 aaKnown RBP14□□□□□ -0.17
LSM3-201ENST00000306024 KCNA6P17658 529 aa14□□□□□ -0.17
LSM3-201ENST00000306024 AEBP2Q6ZN18 517 aaPredicted RBP14□□□□□ -0.17
LSM3-201ENST00000306024 NUDT16Q96DE0 195 aaKnown RBP14□□□□□ -0.17
LSM3-201ENST00000306024 METP08581 1390 aa14□□□□□ -0.17
LSM3-201ENST00000306024 PIK3C2BO00750 1634 aa13.99□□□□□ -0.17
LSM3-201ENST00000306024 RGS3P49796 1198 aa13.99□□□□□ -0.17
LSM3-201ENST00000306024 RCAN3Q9UKA8 241 aa13.99□□□□□ -0.17
LSM3-201ENST00000306024 CCDC61Q9Y6R9 512 aa13.99□□□□□ -0.17
LSM3-201ENST00000306024 MADDQ8WXG6 1647 aa13.99□□□□□ -0.17
LSM3-201ENST00000306024 GGNBP2Q9H3C7 697 aa13.99□□□□□ -0.17
LSM3-201ENST00000306024 RIMS1Q86UR5 1692 aaKnown RBP13.99□□□□□ -0.17
LSM3-201ENST00000306024 FER1L4A9Z1Z3 1794 aa13.98□□□□□ -0.17
LSM3-201ENST00000306024 TRPM1Q7Z4N2 1603 aa13.98□□□□□ -0.17
LSM3-201ENST00000306024 PLEKHG1Q9ULL1 1385 aa13.98□□□□□ -0.17
LSM3-201ENST00000306024 ATF3P18847 181 aa13.97□□□□□ -0.17
LSM3-201ENST00000306024 RRP1P56182 461 aaKnown RBP13.97□□□□□ -0.17
LSM3-201ENST00000306024 NEXMIFQ5QGS0 1516 aa13.96□□□□□ -0.17
LSM3-201ENST00000306024 SIGLEC1Q9BZZ2 1709 aa13.96□□□□□ -0.17
LSM3-201ENST00000306024 ABCC11Q96J66 1382 aa13.96□□□□□ -0.17
LSM3-201ENST00000306024 MROH2AA6NES4 1674 aa13.96□□□□□ -0.18
LSM3-201ENST00000306024 U2SURPO15042 1029 aaKnown RBP13.96□□□□□ -0.18
LSM3-201ENST00000306024 TRIM44Q96DX7 344 aaPredicted RBP13.96□□□□□ -0.18
LSM3-201ENST00000306024 BECN1Q14457 450 aa13.95□□□□□ -0.18
LSM3-201ENST00000306024 PTPRMP28827 1452 aa13.95□□□□□ -0.18
LSM3-201ENST00000306024 ESCO1Q5FWF5 840 aa13.95□□□□□ -0.18
LSM3-201ENST00000306024 SLKQ9H2G2 1235 aaPredicted RBP13.95□□□□□ -0.18
LSM3-201ENST00000306024 PLEKHH1Q9ULM0 1364 aa13.95□□□□□ -0.18
LSM3-201ENST00000306024 SETD1BQ9UPS6 1966 aaKnown RBP13.94□□□□□ -0.18
LSM3-201ENST00000306024 A0A0U1RQG5 324 aaPredicted RBP13.94□□□□□ -0.18
LSM3-201ENST00000306024 COG3Q96JB2 828 aa13.94□□□□□ -0.18
LSM3-201ENST00000306024 TMEM131LA2VDJ0 1609 aa13.93□□□□□ -0.18
LSM3-201ENST00000306024 NSD3Q9BZ95 1437 aa13.93□□□□□ -0.18
LSM3-201ENST00000306024 PSME1Q06323 249 aa13.93□□□□□ -0.18
LSM3-201ENST00000306024 SMG6Q86US8 1419 aaKnown RBP13.93□□□□□ -0.18
LSM3-201ENST00000306024 GZF1Q9H116 711 aaPredicted RBP13.93□□□□□ -0.18
LSM3-201ENST00000306024 HAP1P54257 671 aaPredicted RBP13.93□□□□□ -0.18
LSM3-201ENST00000306024 ALKQ9UM73 1620 aa13.91□□□□□ -0.18
LSM3-201ENST00000306024 ZNF692Q9BU19 519 aaPredicted RBP13.91□□□□□ -0.18
LSM3-201ENST00000306024 NEUROD2Q15784 382 aa13.9□□□□□ -0.18
LSM3-201ENST00000306024 UPF2Q9HAU5 1272 aaKnown RBP13.9□□□□□ -0.18
LSM3-201ENST00000306024 SBNO2Q9Y2G9 1366 aa13.9□□□□□ -0.18
LSM3-201ENST00000306024 RRP9O43818 475 aaKnown RBP13.9□□□□□ -0.18
LSM3-201ENST00000306024 NUTM2GQ5VZR2 741 aa13.9□□□□□ -0.18
LSM3-201ENST00000306024 NEURL4Q96JN8 1562 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms