RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 EVC2Q86UK5 1308 aa28.97■■■□□ 2.23
TPM4-201ENST00000300933 ZMYM4Q5VZL5 1548 aa28.97■■■□□ 2.23
TPM4-201ENST00000300933 SRPK2P78362 688 aaKnown RBP28.97■■■□□ 2.23
TPM4-201ENST00000300933 PRAM1Q96QH2 718 aa28.97■■■□□ 2.23
TPM4-201ENST00000300933 APAF1O14727 1248 aa28.96■■■□□ 2.23
TPM4-201ENST00000300933 ZC3H13Q5T200 1668 aaKnown RBP28.96■■■□□ 2.23
TPM4-201ENST00000300933 POGKQ9P215 609 aa28.94■■■□□ 2.22
TPM4-201ENST00000300933 TMEM131LA2VDJ0 1609 aa28.93■■■□□ 2.22
TPM4-201ENST00000300933 TULP4Q9NRJ4 1543 aa28.9■■■□□ 2.22
TPM4-201ENST00000300933 SPINK5Q9NQ38 1064 aaPredicted RBP28.88■■■□□ 2.21
TPM4-201ENST00000300933 CLTCQ00610 1675 aaKnown RBP28.88■■■□□ 2.21
TPM4-201ENST00000300933 ARHGEF28Q8N1W1 1705 aaKnown RBP28.88■■■□□ 2.21
TPM4-201ENST00000300933 NEUROD2Q15784 382 aa28.87■■■□□ 2.21
TPM4-201ENST00000300933 WAPLQ7Z5K2 1190 aa28.87■■■□□ 2.21
TPM4-201ENST00000300933 ESF1Q9H501 851 aaKnown RBP28.87■■■□□ 2.21
TPM4-201ENST00000300933 MTHFSP49914 203 aa28.86■■■□□ 2.21
TPM4-201ENST00000300933 INSRP06213 1382 aa28.85■■■□□ 2.21
TPM4-201ENST00000300933 DUSP27Q5VZP5 1158 aa28.85■■■□□ 2.21
TPM4-201ENST00000300933 PLPPR3Q6T4P5 718 aa28.85■■■□□ 2.21
TPM4-201ENST00000300933 DMRT2Q9Y5R5 561 aa28.85■■■□□ 2.21
TPM4-201ENST00000300933 GOLGA2Q08379 1002 aa28.84■■■□□ 2.21
TPM4-201ENST00000300933 CGNL1Q0VF96 1302 aa28.84■■■□□ 2.21
TPM4-201ENST00000300933 ZFYVE9O95405 1425 aa28.84■■■□□ 2.21
TPM4-201ENST00000300933 RRP7AQ9Y3A4 280 aaKnown RBP28.83■■■□□ 2.21
TPM4-201ENST00000300933 YTHDC2Q9H6S0 1430 aaKnown RBP28.82■■■□□ 2.2
TPM4-201ENST00000300933 C20orf194Q5TEA3 1177 aa28.82■■■□□ 2.2
TPM4-201ENST00000300933 GGNBP2Q9H3C7 697 aa28.82■■■□□ 2.2
TPM4-201ENST00000300933 ZNF521Q96K83 1311 aa28.81■■■□□ 2.2
TPM4-201ENST00000300933 KIF13AQ9H1H9 1805 aa28.8■■■□□ 2.2
TPM4-201ENST00000300933 CDK19Q9BWU1 502 aa28.78■■■□□ 2.2
TPM4-201ENST00000300933 PTPRMP28827 1452 aa28.77■■■□□ 2.2
TPM4-201ENST00000300933 A0A1W2PP64 1363 aa28.77■■■□□ 2.2
TPM4-201ENST00000300933 ANKRD36BQ8N2N9 1353 aa28.77■■■□□ 2.2
TPM4-201ENST00000300933 CRBNQ96SW2 442 aa28.77■■■□□ 2.2
TPM4-201ENST00000300933 AGLP35573 1532 aa28.76■■■□□ 2.2
TPM4-201ENST00000300933 ZMYM3Q14202 1370 aa28.76■■■□□ 2.2
TPM4-201ENST00000300933 ALKQ9UM73 1620 aa28.76■■■□□ 2.19
TPM4-201ENST00000300933 A2ML1A8K2U0 1454 aa28.76■■■□□ 2.19
TPM4-201ENST00000300933 SLFN5Q08AF3 891 aa28.76■■■□□ 2.19
TPM4-201ENST00000300933 PPP6R1Q9UPN7 881 aa28.76■■■□□ 2.19
TPM4-201ENST00000300933 CABP1Q9NZU7 370 aa28.75■■■□□ 2.19
TPM4-201ENST00000300933 ANP32AP39687 249 aaKnown RBP28.74■■■□□ 2.19
TPM4-201ENST00000300933 RIMS2Q9UQ26 1411 aa28.74■■■□□ 2.19
TPM4-201ENST00000300933 POLR3AO14802 1390 aaPredicted RBP28.74■■■□□ 2.19
TPM4-201ENST00000300933 FBLN1P23142 703 aa28.71■■■□□ 2.19
TPM4-201ENST00000300933 CEBPAP49715 358 aaPredicted RBP28.71■■■□□ 2.19
TPM4-201ENST00000300933 IPO9Q96P70 1041 aaKnown RBP28.7■■■□□ 2.19
TPM4-201ENST00000300933 TXNDC2Q86VQ3 553 aa28.7■■■□□ 2.18
TPM4-201ENST00000300933 PUS7Q96PZ0 661 aaKnown RBP28.69■■■□□ 2.18
TPM4-201ENST00000300933 SKAP1Q86WV1 359 aa28.69■■■□□ 2.18
TPM4-201ENST00000300933 REREQ9P2R6 1566 aa28.69■■■□□ 2.18
TPM4-201ENST00000300933 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.68■■■□□ 2.18
TPM4-201ENST00000300933 FYB1O15117 783 aa28.67■■■□□ 2.18
TPM4-201ENST00000300933 ZBTB47Q9UFB7 747 aaPredicted RBP28.67■■■□□ 2.18
TPM4-201ENST00000300933 U2AF1L5P0DN76 240 aaPredicted RBP28.67■■■□□ 2.18
TPM4-201ENST00000300933 U2AF1Q01081 240 aaKnown RBP eCLIP28.67■■■□□ 2.18
TPM4-201ENST00000300933 RTL5Q5HYW3 569 aaPredicted RBP28.67■■■□□ 2.18
TPM4-201ENST00000300933 TCP11L2Q8N4U5 519 aa28.67■■■□□ 2.18
TPM4-201ENST00000300933 BCAR3O75815 825 aa28.66■■■□□ 2.18
TPM4-201ENST00000300933 WWC1Q8IX03 1113 aa28.66■■■□□ 2.18
TPM4-201ENST00000300933 ARHGEF40Q8TER5 1519 aa28.66■■■□□ 2.18
TPM4-201ENST00000300933 TERF2IPQ9NYB0 399 aa28.66■■■□□ 2.18
TPM4-201ENST00000300933 SPATA31D1Q6ZQQ2 1576 aa28.65■■■□□ 2.18
TPM4-201ENST00000300933 METP08581 1390 aa28.65■■■□□ 2.18
TPM4-201ENST00000300933 CFAP53Q96M91 514 aa28.65■■■□□ 2.18
TPM4-201ENST00000300933 NCKAP5LQ9HCH0 1330 aa28.64■■■□□ 2.18
TPM4-201ENST00000300933 U2SURPO15042 1029 aaKnown RBP28.63■■■□□ 2.17
TPM4-201ENST00000300933 TRMT2AQ8IZ69 625 aaKnown RBP28.63■■■□□ 2.17
TPM4-201ENST00000300933 RUNDC1Q96C34 613 aa28.62■■■□□ 2.17
TPM4-201ENST00000300933 ATAD2Q6PL18 1390 aa28.61■■■□□ 2.17
TPM4-201ENST00000300933 ABCC11Q96J66 1382 aa28.6■■■□□ 2.17
TPM4-201ENST00000300933 CD163L1Q9NR16 1453 aa28.6■■■□□ 2.17
TPM4-201ENST00000300933 E9PSI1 815 aa28.59■■■□□ 2.17
TPM4-201ENST00000300933 PPM1GO15355 546 aaPredicted RBP28.59■■■□□ 2.17
TPM4-201ENST00000300933 HDGFL2Q7Z4V5 671 aaPredicted RBP28.59■■■□□ 2.17
TPM4-201ENST00000300933 SHPRHQ149N8 1683 aa28.59■■■□□ 2.17
TPM4-201ENST00000300933 NPM2Q86SE8 214 aaKnown RBP28.57■■■□□ 2.16
TPM4-201ENST00000300933 TNRQ92752 1358 aa28.56■■■□□ 2.16
TPM4-201ENST00000300933 NUTM2FA1L443 756 aa28.55■■■□□ 2.16
TPM4-201ENST00000300933 PRKCSHP14314 528 aaPredicted RBP28.53■■■□□ 2.16
TPM4-201ENST00000300933 ANO8Q9HCE9 1232 aaPredicted RBP28.53■■■□□ 2.16
TPM4-201ENST00000300933 USP32Q8NFA0 1604 aa28.53■■■□□ 2.16
TPM4-201ENST00000300933 NSD2O96028 1365 aa28.53■■■□□ 2.16
TPM4-201ENST00000300933 NKTRP30414 1462 aaKnown RBP28.53■■■□□ 2.16
TPM4-201ENST00000300933 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.53■■■□□ 2.16
TPM4-201ENST00000300933 ZRANB1Q9UGI0 708 aa28.53■■■□□ 2.16
TPM4-201ENST00000300933 NINLQ9Y2I6 1382 aa28.51■■■□□ 2.15
TPM4-201ENST00000300933 TRHP20396 242 aaPredicted RBP28.51■■■□□ 2.15
TPM4-201ENST00000300933 LTKP29376 864 aa28.51■■■□□ 2.15
TPM4-201ENST00000300933 SLC26A8Q96RN1 970 aa28.5■■■□□ 2.15
TPM4-201ENST00000300933 WASLO00401 505 aaPredicted RBP28.49■■■□□ 2.15
TPM4-201ENST00000300933 BCL2L13Q9BXK5 485 aa28.49■■■□□ 2.15
TPM4-201ENST00000300933 NRXN3Q9Y4C0 1643 aa28.47■■■□□ 2.15
TPM4-201ENST00000300933 FRAT1Q92837 279 aaPredicted RBP28.46■■■□□ 2.15
TPM4-201ENST00000300933 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.46■■■□□ 2.15
TPM4-201ENST00000300933 IL27Q8NEV9 243 aa28.46■■■□□ 2.15
TPM4-201ENST00000300933 NME9Q86XW9 330 aa28.46■■■□□ 2.15
TPM4-201ENST00000300933 NLRP1Q9C000 1473 aa28.45■■■□□ 2.15
TPM4-201ENST00000300933 NUDT16Q96DE0 195 aaKnown RBP28.45■■■□□ 2.14
TPM4-201ENST00000300933 SETD1AO15047 1707 aaKnown RBP28.45■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 612.8 ms