RNA–Protein interactions for RNA: ENST00000299957.10

CASC4-201, Transcript of cancer susceptibility 4, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CASC4, Length 3,962 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-201ENST00000299957 NUP153P49790 1475 aaKnown RBP16.49■□□□□ 0.23
CASC4-201ENST00000299957 EIF2S2P20042 333 aaKnown RBP16.48■□□□□ 0.23
CASC4-201ENST00000299957 RRS1Q15050 365 aaKnown RBP16.48■□□□□ 0.23
CASC4-201ENST00000299957 STK31Q9BXU1 1019 aa16.48■□□□□ 0.23
CASC4-201ENST00000299957 NGDNQ8NEJ9 315 aaKnown RBP16.48■□□□□ 0.23
CASC4-201ENST00000299957 COG3Q96JB2 828 aa16.48■□□□□ 0.23
CASC4-201ENST00000299957 AMPHP49418 695 aa16.47■□□□□ 0.23
CASC4-201ENST00000299957 MCM4P33991 863 aa16.47■□□□□ 0.23
CASC4-201ENST00000299957 MIS18AQ9NYP9 233 aa16.47■□□□□ 0.23
CASC4-201ENST00000299957 CARD14Q9BXL6 1004 aa16.47■□□□□ 0.23
CASC4-201ENST00000299957 ANO2Q9NQ90 1003 aa16.46■□□□□ 0.23
CASC4-201ENST00000299957 PANK2Q9BZ23 570 aa16.46■□□□□ 0.23
CASC4-201ENST00000299957 RSPH6AQ9H0K4 717 aa16.46■□□□□ 0.23
CASC4-201ENST00000299957 MRC2Q9UBG0 1479 aa16.46■□□□□ 0.23
CASC4-201ENST00000299957 TMPOP42166 694 aaKnown RBP16.45■□□□□ 0.22
CASC4-201ENST00000299957 CAVIN1Q6NZI2 390 aaKnown RBP16.45■□□□□ 0.22
CASC4-201ENST00000299957 PARD3Q8TEW0 1356 aa16.45■□□□□ 0.22
CASC4-201ENST00000299957 MCCP23508 829 aa16.45■□□□□ 0.22
CASC4-201ENST00000299957 PZPP20742 1482 aa16.45■□□□□ 0.22
CASC4-201ENST00000299957 TRIM27P14373 513 aa16.45■□□□□ 0.22
CASC4-201ENST00000299957 GOLGA6L4A6NEF3 574 aa16.44■□□□□ 0.22
CASC4-201ENST00000299957 ST18O60284 1047 aa16.44■□□□□ 0.22
CASC4-201ENST00000299957 CUL7Q14999 1698 aa16.44■□□□□ 0.22
CASC4-201ENST00000299957 KIAA1211Q6ZU35 1233 aa16.44■□□□□ 0.22
CASC4-201ENST00000299957 WAPLQ7Z5K2 1190 aa16.44■□□□□ 0.22
CASC4-201ENST00000299957 TEX14Q8IWB6 1497 aa16.44■□□□□ 0.22
CASC4-201ENST00000299957 FAM13BQ9NYF5 915 aa16.44■□□□□ 0.22
CASC4-201ENST00000299957 TXNDC2Q86VQ3 553 aa16.43■□□□□ 0.22
CASC4-201ENST00000299957 ZNF330Q9Y3S2 320 aaPredicted RBP16.43■□□□□ 0.22
CASC4-201ENST00000299957 LRPPRCP42704 1394 aaKnown RBP16.43■□□□□ 0.22
CASC4-201ENST00000299957 KIF16BQ96L93 1317 aa16.43■□□□□ 0.22
CASC4-201ENST00000299957 TWISTNBQ3B726 338 aaPredicted RBP16.43■□□□□ 0.22
CASC4-201ENST00000299957 FKBP5Q13451 457 aaPredicted RBP16.42■□□□□ 0.22
CASC4-201ENST00000299957 DRC7Q8IY82 874 aa16.42■□□□□ 0.22
CASC4-201ENST00000299957 NGEFQ8N5V2 710 aa16.42■□□□□ 0.22
CASC4-201ENST00000299957 SPATA31E1Q6ZUB1 1445 aa16.42■□□□□ 0.22
CASC4-201ENST00000299957 RNF123Q5XPI4 1314 aa16.41■□□□□ 0.22
CASC4-201ENST00000299957 SMARCA5O60264 1052 aaPredicted RBP16.41■□□□□ 0.22
CASC4-201ENST00000299957 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.41■□□□□ 0.22
CASC4-201ENST00000299957 GRIN2AQ12879 1464 aa16.41■□□□□ 0.22
CASC4-201ENST00000299957 HMMRO75330 724 aa16.41■□□□□ 0.22
CASC4-201ENST00000299957 PRPF40AO75400 957 aaKnown RBP16.41■□□□□ 0.22
CASC4-201ENST00000299957 RBM42Q9BTD8 480 aaKnown RBP16.41■□□□□ 0.22
CASC4-201ENST00000299957 CDK19Q9BWU1 502 aa16.4■□□□□ 0.22
CASC4-201ENST00000299957 IFT140Q96RY7 1462 aa16.4■□□□□ 0.22
CASC4-201ENST00000299957 CCDC141Q6ZP82 1450 aa16.4■□□□□ 0.22
CASC4-201ENST00000299957 CHD1LQ86WJ1 897 aa16.4■□□□□ 0.22
CASC4-201ENST00000299957 CFAP43Q8NDM7 1665 aa16.4■□□□□ 0.22
CASC4-201ENST00000299957 NKTRP30414 1462 aaKnown RBP16.39■□□□□ 0.22
CASC4-201ENST00000299957 WDR63Q8IWG1 891 aa16.39■□□□□ 0.21
CASC4-201ENST00000299957 SULT6B1Q6IMI4 303 aa16.39■□□□□ 0.21
CASC4-201ENST00000299957 RBM10P98175 930 aaKnown RBP16.39■□□□□ 0.21
CASC4-201ENST00000299957 FAM83GA6ND36 823 aa16.38■□□□□ 0.21
CASC4-201ENST00000299957 NEK4P51957 841 aa16.38■□□□□ 0.21
CASC4-201ENST00000299957 MAP4K4O95819 1239 aaPredicted RBP16.38■□□□□ 0.21
CASC4-201ENST00000299957 PRAG1Q86YV5 1406 aa16.38■□□□□ 0.21
CASC4-201ENST00000299957 NASPP49321 788 aaPredicted RBP16.38■□□□□ 0.21
CASC4-201ENST00000299957 EMILIN1Q9Y6C2 1016 aa16.38■□□□□ 0.21
CASC4-201ENST00000299957 GNAI1P63096 354 aa16.37■□□□□ 0.21
CASC4-201ENST00000299957 FAM43AQ8N2R8 423 aa16.37■□□□□ 0.21
CASC4-201ENST00000299957 TSHZ3Q63HK5 1081 aa16.37■□□□□ 0.21
CASC4-201ENST00000299957 MRE11P49959 708 aa16.37■□□□□ 0.21
CASC4-201ENST00000299957 ATP10BO94823 1461 aa16.37■□□□□ 0.21
CASC4-201ENST00000299957 RALGAPBQ86X10 1494 aa16.37■□□□□ 0.21
CASC4-201ENST00000299957 TSPYL4Q9UJ04 414 aa16.36■□□□□ 0.21
CASC4-201ENST00000299957 API5Q9BZZ5 524 aaKnown RBP16.36■□□□□ 0.21
CASC4-201ENST00000299957 LMOD3Q0VAK6 560 aa16.36■□□□□ 0.21
CASC4-201ENST00000299957 GPRASP1Q5JY77 1395 aa16.36■□□□□ 0.21
CASC4-201ENST00000299957 GRPEL1Q9HAV7 217 aa16.36■□□□□ 0.21
CASC4-201ENST00000299957 SLC4A2P04920 1241 aa16.35■□□□□ 0.21
CASC4-201ENST00000299957 MCM10Q7L590 875 aa16.35■□□□□ 0.21
CASC4-201ENST00000299957 R3HCC1Q9Y3T6 440 aaKnown RBP16.35■□□□□ 0.21
CASC4-201ENST00000299957 CDC45O75419 566 aa16.35■□□□□ 0.21
CASC4-201ENST00000299957 CCDC27Q2M243 656 aa16.35■□□□□ 0.21
CASC4-201ENST00000299957 FBXO31Q5XUX0 539 aaPredicted RBP16.35■□□□□ 0.21
CASC4-201ENST00000299957 LARP6Q9BRS8 491 aaKnown RBP16.35■□□□□ 0.21
CASC4-201ENST00000299957 TCOF1Q13428 1488 aaKnown RBP16.34■□□□□ 0.21
CASC4-201ENST00000299957 HAP1P54257 671 aaPredicted RBP16.34■□□□□ 0.21
CASC4-201ENST00000299957 SSFA2P28290 1259 aa16.34■□□□□ 0.21
CASC4-201ENST00000299957 FOSBP53539 338 aa16.34■□□□□ 0.21
CASC4-201ENST00000299957 EXOC6BQ9Y2D4 811 aa16.34■□□□□ 0.21
CASC4-201ENST00000299957 TBC1D32Q96NH3 1257 aa16.33■□□□□ 0.21
CASC4-201ENST00000299957 F6X3S4 739 aa16.33■□□□□ 0.2
CASC4-201ENST00000299957 ZRSR1Q15695 479 aaKnown RBP16.33■□□□□ 0.2
CASC4-201ENST00000299957 DDX54Q8TDD1 881 aaKnown RBP16.33■□□□□ 0.2
CASC4-201ENST00000299957 NME9Q86XW9 330 aa16.33■□□□□ 0.2
CASC4-201ENST00000299957 KIAA2012Q0VF49 1180 aa16.32■□□□□ 0.2
CASC4-201ENST00000299957 IL1RAPL2Q9NP60 686 aa16.32■□□□□ 0.2
CASC4-201ENST00000299957 IDI1Q13907 227 aa16.32■□□□□ 0.2
CASC4-201ENST00000299957 UPF3BQ9BZI7 483 aaKnown RBP16.32■□□□□ 0.2
CASC4-201ENST00000299957 DTNBO60941 627 aa16.31■□□□□ 0.2
CASC4-201ENST00000299957 INTS3Q68E01 1043 aaKnown RBP16.31■□□□□ 0.2
CASC4-201ENST00000299957 TNPO1Q92973 898 aaKnown RBP16.31■□□□□ 0.2
CASC4-201ENST00000299957 REC8O95072 547 aa16.31■□□□□ 0.2
CASC4-201ENST00000299957 FBXW7Q969H0 707 aa16.31■□□□□ 0.2
CASC4-201ENST00000299957 XRCC6P12956 609 aaKnown RBP eCLIP16.3■□□□□ 0.2
CASC4-201ENST00000299957 KRT24Q2M2I5 525 aa16.3■□□□□ 0.2
CASC4-201ENST00000299957 STAC3Q96MF2 364 aa16.3■□□□□ 0.2
CASC4-201ENST00000299957 ZRANB1Q9UGI0 708 aa16.3■□□□□ 0.2
CASC4-201ENST00000299957 LAMC3Q9Y6N6 1575 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms