RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 NAP1L5Q96NT1 182 aaPredicted RBP17.26■□□□□ 0.35
CTDP1-202ENST00000299543 UHRF1BP1LA0JNW5 1464 aa17.26■□□□□ 0.35
CTDP1-202ENST00000299543 RUNDC1Q96C34 613 aa17.26■□□□□ 0.35
CTDP1-202ENST00000299543 RNF17Q9BXT8 1623 aaKnown RBP17.26■□□□□ 0.35
CTDP1-202ENST00000299543 ASXL2Q76L83 1435 aa17.26■□□□□ 0.35
CTDP1-202ENST00000299543 SPHKAPQ2M3C7 1700 aa17.25■□□□□ 0.35
CTDP1-202ENST00000299543 SYNMO15061 1565 aa17.25■□□□□ 0.35
CTDP1-202ENST00000299543 IQGAP1P46940 1657 aa17.24■□□□□ 0.35
CTDP1-202ENST00000299543 NPC1L1Q9UHC9 1359 aa17.23■□□□□ 0.35
CTDP1-202ENST00000299543 C14orf93Q9H972 538 aaKnown RBP17.23■□□□□ 0.35
CTDP1-202ENST00000299543 CGNL1Q0VF96 1302 aa17.23■□□□□ 0.35
CTDP1-202ENST00000299543 GGNBP2Q9H3C7 697 aa17.23■□□□□ 0.35
CTDP1-202ENST00000299543 FAM43AQ8N2R8 423 aa17.22■□□□□ 0.35
CTDP1-202ENST00000299543 TSR2Q969E8 191 aaKnown RBP17.21■□□□□ 0.35
CTDP1-202ENST00000299543 RLBP1P12271 317 aa17.2■□□□□ 0.34
CTDP1-202ENST00000299543 RARSP54136 660 aaKnown RBP17.2■□□□□ 0.34
CTDP1-202ENST00000299543 MINK1Q8N4C8 1332 aaPredicted RBP17.2■□□□□ 0.34
CTDP1-202ENST00000299543 A0A0U1RQG5 324 aaPredicted RBP17.2■□□□□ 0.34
CTDP1-202ENST00000299543 PDE3AQ14432 1141 aa17.2■□□□□ 0.34
CTDP1-202ENST00000299543 TET3O43151 1660 aa17.2■□□□□ 0.34
CTDP1-202ENST00000299543 KDM5AP29375 1690 aaKnown RBP17.2■□□□□ 0.34
CTDP1-202ENST00000299543 EVC2Q86UK5 1308 aa17.19■□□□□ 0.34
CTDP1-202ENST00000299543 CEP152O94986 1710 aa17.19■□□□□ 0.34
CTDP1-202ENST00000299543 SEC24BO95487 1268 aa17.19■□□□□ 0.34
CTDP1-202ENST00000299543 FTSJ3Q8IY81 847 aaKnown RBP17.19■□□□□ 0.34
CTDP1-202ENST00000299543 POGKQ9P215 609 aa17.19■□□□□ 0.34
CTDP1-202ENST00000299543 VGFO15240 615 aaPredicted RBP17.18■□□□□ 0.34
CTDP1-202ENST00000299543 CLASP1Q7Z460 1538 aa17.18■□□□□ 0.34
CTDP1-202ENST00000299543 STAG3Q9UJ98 1225 aa17.18■□□□□ 0.34
CTDP1-202ENST00000299543 POLR3AO14802 1390 aaPredicted RBP17.17■□□□□ 0.34
CTDP1-202ENST00000299543 SLKQ9H2G2 1235 aaPredicted RBP17.17■□□□□ 0.34
CTDP1-202ENST00000299543 PCDHB15Q9Y5E8 787 aa17.17■□□□□ 0.34
CTDP1-202ENST00000299543 IDI1Q13907 227 aa17.16■□□□□ 0.34
CTDP1-202ENST00000299543 ABCA6Q8N139 1617 aa17.16■□□□□ 0.34
CTDP1-202ENST00000299543 CD109Q6YHK3 1445 aa17.16■□□□□ 0.34
CTDP1-202ENST00000299543 NGEFQ8N5V2 710 aa17.16■□□□□ 0.34
CTDP1-202ENST00000299543 NPATQ14207 1427 aa17.16■□□□□ 0.34
CTDP1-202ENST00000299543 MAP3K4Q9Y6R4 1608 aa17.16■□□□□ 0.34
CTDP1-202ENST00000299543 SPRYD3Q8NCJ5 442 aa17.15■□□□□ 0.34
CTDP1-202ENST00000299543 MYH16Q9H6N6 1097 aa17.14■□□□□ 0.33
CTDP1-202ENST00000299543 SMC4Q9NTJ3 1288 aa17.14■□□□□ 0.33
CTDP1-202ENST00000299543 FBLN1P23142 703 aa17.14■□□□□ 0.33
CTDP1-202ENST00000299543 MYOM1P52179 1685 aa17.14■□□□□ 0.33
CTDP1-202ENST00000299543 MAPK8IP3Q9UPT6 1336 aa17.13■□□□□ 0.33
CTDP1-202ENST00000299543 HSP90AA2PQ14568 343 aaPredicted RBP17.13■□□□□ 0.33
CTDP1-202ENST00000299543 OSCARQ8IYS5 282 aa17.12■□□□□ 0.33
CTDP1-202ENST00000299543 PDZRN3Q9UPQ7 1066 aa17.12■□□□□ 0.33
CTDP1-202ENST00000299543 MYOM2P54296 1465 aa17.12■□□□□ 0.33
CTDP1-202ENST00000299543 ZNF518AQ6AHZ1 1483 aa17.12■□□□□ 0.33
CTDP1-202ENST00000299543 EXOSC9Q06265 439 aaKnown RBP17.12■□□□□ 0.33
CTDP1-202ENST00000299543 WDR63Q8IWG1 891 aa17.12■□□□□ 0.33
CTDP1-202ENST00000299543 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.12■□□□□ 0.33
CTDP1-202ENST00000299543 PMFBP1Q8TBY8 1022 aa17.12■□□□□ 0.33
CTDP1-202ENST00000299543 KIF1BO60333 1816 aa17.11■□□□□ 0.33
CTDP1-202ENST00000299543 INO80Q9ULG1 1556 aaPredicted RBP17.11■□□□□ 0.33
CTDP1-202ENST00000299543 ITPRIPQ8IWB1 547 aa17.11■□□□□ 0.33
CTDP1-202ENST00000299543 PRAM1Q96QH2 718 aa17.11■□□□□ 0.33
CTDP1-202ENST00000299543 UPF2Q9HAU5 1272 aaKnown RBP17.11■□□□□ 0.33
CTDP1-202ENST00000299543 EFCAB6Q5THR3 1501 aa17.1■□□□□ 0.33
CTDP1-202ENST00000299543 ARAP3Q8WWN8 1544 aa17.1■□□□□ 0.33
CTDP1-202ENST00000299543 RWDD1Q9H446 243 aaPredicted RBP17.1■□□□□ 0.33
CTDP1-202ENST00000299543 DEPDC5O75140 1603 aa17.1■□□□□ 0.33
CTDP1-202ENST00000299543 ZKSCAN2Q63HK3 967 aa17.09■□□□□ 0.33
CTDP1-202ENST00000299543 PPRC1Q5VV67 1664 aaKnown RBP17.08■□□□□ 0.33
CTDP1-202ENST00000299543 FBXO31Q5XUX0 539 aaPredicted RBP17.08■□□□□ 0.33
CTDP1-202ENST00000299543 DZIP1LQ8IYY4 767 aaKnown RBP17.08■□□□□ 0.33
CTDP1-202ENST00000299543 VWDEQ8N2E2 1590 aa17.08■□□□□ 0.33
CTDP1-202ENST00000299543 RPGRIP1LQ68CZ1 1315 aa17.08■□□□□ 0.33
CTDP1-202ENST00000299543 SBNO2Q9Y2G9 1366 aa17.08■□□□□ 0.32
CTDP1-202ENST00000299543 RIPK4P57078 832 aa17.08■□□□□ 0.32
CTDP1-202ENST00000299543 MLECQ14165 292 aa17.08■□□□□ 0.32
CTDP1-202ENST00000299543 MROH1Q8NDA8 1641 aa17.07■□□□□ 0.32
CTDP1-202ENST00000299543 ABCA9Q8IUA7 1624 aa17.07■□□□□ 0.32
CTDP1-202ENST00000299543 MROH2AA6NES4 1674 aa17.07■□□□□ 0.32
CTDP1-202ENST00000299543 TMPOP42166 694 aaKnown RBP17.06■□□□□ 0.32
CTDP1-202ENST00000299543 BECN1Q14457 450 aa17.06■□□□□ 0.32
CTDP1-202ENST00000299543 TERF2IPQ9NYB0 399 aa17.05■□□□□ 0.32
CTDP1-202ENST00000299543 CABP1Q9NZU7 370 aa17.05■□□□□ 0.32
CTDP1-202ENST00000299543 KIDINS220Q9ULH0 1771 aa17.05■□□□□ 0.32
CTDP1-202ENST00000299543 ELL2O00472 640 aaPredicted RBP17.05■□□□□ 0.32
CTDP1-202ENST00000299543 MVPQ14764 893 aaKnown RBP17.05■□□□□ 0.32
CTDP1-202ENST00000299543 SSH1Q8WYL5 1049 aa17.05■□□□□ 0.32
CTDP1-202ENST00000299543 FYB1O15117 783 aa17.04■□□□□ 0.32
CTDP1-202ENST00000299543 HSP90AA1P07900 732 aaKnown RBP17.04■□□□□ 0.32
CTDP1-202ENST00000299543 MFAP1P55081 439 aaKnown RBP17.04■□□□□ 0.32
CTDP1-202ENST00000299543 ANKRD36BQ8N2N9 1353 aa17.04■□□□□ 0.32
CTDP1-202ENST00000299543 NOB1Q9ULX3 412 aaKnown RBP17.03■□□□□ 0.32
CTDP1-202ENST00000299543 PANK2Q9BZ23 570 aa17.03■□□□□ 0.32
CTDP1-202ENST00000299543 A0A1W2PP64 1363 aa17.03■□□□□ 0.32
CTDP1-202ENST00000299543 USP19O94966 1318 aa17.03■□□□□ 0.32
CTDP1-202ENST00000299543 HMOX1P09601 288 aa17.03■□□□□ 0.32
CTDP1-202ENST00000299543 HDGFL2Q7Z4V5 671 aaPredicted RBP17.03■□□□□ 0.32
CTDP1-202ENST00000299543 DIAPH1O60610 1272 aaKnown RBP17.02■□□□□ 0.32
CTDP1-202ENST00000299543 TRIM27P14373 513 aa17.02■□□□□ 0.32
CTDP1-202ENST00000299543 CDK19Q9BWU1 502 aa17.02■□□□□ 0.32
CTDP1-202ENST00000299543 PNNQ9H307 717 aaKnown RBP17.02■□□□□ 0.32
CTDP1-202ENST00000299543 KIAA1210Q9ULL0 1709 aa17.02■□□□□ 0.31
CTDP1-202ENST00000299543 WAPLQ7Z5K2 1190 aa17.02■□□□□ 0.31
CTDP1-202ENST00000299543 GZF1Q9H116 711 aaPredicted RBP17.02■□□□□ 0.31
CTDP1-202ENST00000299543 POGZQ7Z3K3 1410 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms