RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CDK13Q14004 1512 aaKnown RBP7.9□□□□□ -1.14
VPS35-201ENST00000299138 IL16Q14005 1332 aa7.9□□□□□ -1.14
VPS35-201ENST00000299138 WDR7Q9Y4E6 1490 aa7.9□□□□□ -1.14
VPS35-201ENST00000299138 NEFHP12036 1026 aa7.9□□□□□ -1.14
VPS35-201ENST00000299138 RTEL1-TNFRSF6BF6WH68 1400 aa7.9□□□□□ -1.14
VPS35-201ENST00000299138 PANK3Q9H999 370 aa7.9□□□□□ -1.14
VPS35-201ENST00000299138 ADGRL1O94910 1474 aa7.9□□□□□ -1.14
VPS35-201ENST00000299138 PPP2R1AP30153 589 aa7.9□□□□□ -1.14
VPS35-201ENST00000299138 KCNJ4P48050 445 aa7.9□□□□□ -1.15
VPS35-201ENST00000299138 MAST1Q9Y2H9 1570 aa7.9□□□□□ -1.15
VPS35-201ENST00000299138 DUOX2Q9NRD8 1548 aa7.9□□□□□ -1.15
VPS35-201ENST00000299138 TEX35Q5T0J7 233 aa7.89□□□□□ -1.15
VPS35-201ENST00000299138 SYAP1Q96A49 352 aaPredicted RBP7.89□□□□□ -1.15
VPS35-201ENST00000299138 IBTKQ9P2D0 1353 aaPredicted RBP7.89□□□□□ -1.15
VPS35-201ENST00000299138 ZKSCAN2Q63HK3 967 aa7.89□□□□□ -1.15
VPS35-201ENST00000299138 MAGI3Q5TCQ9 1506 aa7.89□□□□□ -1.15
VPS35-201ENST00000299138 RDXP35241 583 aaKnown RBP7.89□□□□□ -1.15
VPS35-201ENST00000299138 ASXL1Q8IXJ9 1541 aa7.89□□□□□ -1.15
VPS35-201ENST00000299138 NUCB2P80303 420 aa7.89□□□□□ -1.15
VPS35-201ENST00000299138 FRAT1Q92837 279 aaPredicted RBP7.89□□□□□ -1.15
VPS35-201ENST00000299138 PRDM15P57071 1507 aaPredicted RBP7.89□□□□□ -1.15
VPS35-201ENST00000299138 GNL2Q13823 731 aaKnown RBP7.89□□□□□ -1.15
VPS35-201ENST00000299138 CREBRFQ8IUR6 639 aa7.89□□□□□ -1.15
VPS35-201ENST00000299138 DHX37Q8IY37 1157 aaKnown RBP7.89□□□□□ -1.15
VPS35-201ENST00000299138 SLKQ9H2G2 1235 aaPredicted RBP7.89□□□□□ -1.15
VPS35-201ENST00000299138 KDM2AQ9Y2K7 1162 aa7.89□□□□□ -1.15
VPS35-201ENST00000299138 RUNDC1Q96C34 613 aa7.89□□□□□ -1.15
VPS35-201ENST00000299138 CCDC173Q0VFZ6 552 aa7.88□□□□□ -1.15
VPS35-201ENST00000299138 DUSP27Q5VZP5 1158 aa7.88□□□□□ -1.15
VPS35-201ENST00000299138 ZNF521Q96K83 1311 aa7.88□□□□□ -1.15
VPS35-201ENST00000299138 DISP1Q96F81 1524 aa7.88□□□□□ -1.15
VPS35-201ENST00000299138 FTSJ3Q8IY81 847 aaKnown RBP7.88□□□□□ -1.15
VPS35-201ENST00000299138 SNX21Q969T3 373 aa7.88□□□□□ -1.15
VPS35-201ENST00000299138 AEBP1Q8IUX7 1158 aa7.88□□□□□ -1.15
VPS35-201ENST00000299138 GPS2Q13227 327 aa7.88□□□□□ -1.15
VPS35-201ENST00000299138 BCL11BQ9C0K0 894 aaPredicted RBP7.88□□□□□ -1.15
VPS35-201ENST00000299138 FAM135AQ9P2D6 1515 aa7.87□□□□□ -1.15
VPS35-201ENST00000299138 TPM3P06753 285 aa7.87□□□□□ -1.15
VPS35-201ENST00000299138 RBM25P49756 843 aaKnown RBP7.87□□□□□ -1.15
VPS35-201ENST00000299138 LMOD3Q0VAK6 560 aa7.87□□□□□ -1.15
VPS35-201ENST00000299138 TRMT2AQ8IZ69 625 aaKnown RBP7.87□□□□□ -1.15
VPS35-201ENST00000299138 TARBP1Q13395 1621 aaKnown RBP7.87□□□□□ -1.15
VPS35-201ENST00000299138 HNRNPMP52272 730 aaKnown RBP eCLIP7.87□□□□□ -1.156e-6■■■■□ 20.3
VPS35-201ENST00000299138 ABCC10Q5T3U5 1492 aa7.87□□□□□ -1.15
VPS35-201ENST00000299138 OSCARQ8IYS5 282 aa7.87□□□□□ -1.15
VPS35-201ENST00000299138 ZNF592Q92610 1267 aa7.87□□□□□ -1.15
VPS35-201ENST00000299138 ATAD2Q6PL18 1390 aa7.87□□□□□ -1.15
VPS35-201ENST00000299138 MCM4P33991 863 aa7.86□□□□□ -1.15
VPS35-201ENST00000299138 ARAP3Q8WWN8 1544 aa7.86□□□□□ -1.15
VPS35-201ENST00000299138 HTATSF1O43719 755 aaKnown RBP7.86□□□□□ -1.15
VPS35-201ENST00000299138 PHF14O94880 888 aa7.86□□□□□ -1.15
VPS35-201ENST00000299138 YEATS2Q9ULM3 1422 aa7.86□□□□□ -1.15
VPS35-201ENST00000299138 REREQ9P2R6 1566 aa7.86□□□□□ -1.15
VPS35-201ENST00000299138 MCM2P49736 904 aa7.86□□□□□ -1.15
VPS35-201ENST00000299138 TBC1D32Q96NH3 1257 aa7.86□□□□□ -1.15
VPS35-201ENST00000299138 TESK2Q96S53 571 aa7.86□□□□□ -1.15
VPS35-201ENST00000299138 HMGN5P82970 282 aaKnown RBP7.86□□□□□ -1.15
VPS35-201ENST00000299138 C8orf34Q49A92 452 aa7.86□□□□□ -1.15
VPS35-201ENST00000299138 GCC1Q96CN9 775 aa7.86□□□□□ -1.15
VPS35-201ENST00000299138 CWC22Q9HCG8 908 aaKnown RBP7.86□□□□□ -1.15
VPS35-201ENST00000299138 ZNF644Q9H582 1327 aaPredicted RBP7.85□□□□□ -1.15
VPS35-201ENST00000299138 MBD3O95983 291 aa7.85□□□□□ -1.15
VPS35-201ENST00000299138 HDAC1Q13547 482 aaPredicted RBP7.85□□□□□ -1.15
VPS35-201ENST00000299138 PPP4R3CPQ6ZMV5 832 aa7.85□□□□□ -1.15
VPS35-201ENST00000299138 SYNMO15061 1565 aa7.85□□□□□ -1.15
VPS35-201ENST00000299138 H0YHG0 523 aa7.85□□□□□ -1.15
VPS35-201ENST00000299138 PLEKHG5O94827 1062 aa7.85□□□□□ -1.15
VPS35-201ENST00000299138 TPM4P67936 248 aa7.85□□□□□ -1.15
VPS35-201ENST00000299138 FOXD1Q16676 465 aa7.85□□□□□ -1.15
VPS35-201ENST00000299138 CCDC191Q8NCU4 936 aa7.85□□□□□ -1.15
VPS35-201ENST00000299138 PLXNC1O60486 1568 aa7.84□□□□□ -1.15
VPS35-201ENST00000299138 EPB41L2O43491 1005 aaKnown RBP7.84□□□□□ -1.15
VPS35-201ENST00000299138 MORC1Q86VD1 984 aa7.84□□□□□ -1.15
VPS35-201ENST00000299138 ADAMTS8Q9UP79 889 aa7.84□□□□□ -1.15
VPS35-201ENST00000299138 FAM184AQ8NB25 1140 aa7.84□□□□□ -1.15
VPS35-201ENST00000299138 PDCL3Q9H2J4 239 aa7.84□□□□□ -1.15
VPS35-201ENST00000299138 PLB1Q6P1J6 1458 aa7.84□□□□□ -1.15
VPS35-201ENST00000299138 CHGAP10645 457 aaKnown RBP7.83□□□□□ -1.16
VPS35-201ENST00000299138 DHX8Q14562 1220 aaKnown RBP7.83□□□□□ -1.16
VPS35-201ENST00000299138 CC2D1BQ5T0F9 858 aaKnown RBP7.83□□□□□ -1.16
VPS35-201ENST00000299138 PBRM1Q86U86 1689 aa7.83□□□□□ -1.16
VPS35-201ENST00000299138 ESPNB1AK53 854 aa7.83□□□□□ -1.16
VPS35-201ENST00000299138 WWC1Q8IX03 1113 aa7.83□□□□□ -1.16
VPS35-201ENST00000299138 DZIP1LQ8IYY4 767 aaKnown RBP7.83□□□□□ -1.16
VPS35-201ENST00000299138 RABEP1Q15276 862 aa7.83□□□□□ -1.16
VPS35-201ENST00000299138 ALDH1L2Q3SY69 923 aa7.83□□□□□ -1.16
VPS35-201ENST00000299138 ARHGAP45Q92619 1136 aa7.83□□□□□ -1.16
VPS35-201ENST00000299138 C22orf23Q9BZE7 217 aa7.83□□□□□ -1.16
VPS35-201ENST00000299138 FRAT2O75474 233 aaPredicted RBP7.83□□□□□ -1.16
VPS35-201ENST00000299138 CEP89Q96ST8 783 aa7.82□□□□□ -1.16
VPS35-201ENST00000299138 MYOM2P54296 1465 aa7.82□□□□□ -1.16
VPS35-201ENST00000299138 MAGI2Q86UL8 1455 aa7.82□□□□□ -1.16
VPS35-201ENST00000299138 PLEKHH1Q9ULM0 1364 aa7.82□□□□□ -1.16
VPS35-201ENST00000299138 DYDC1Q8WWB3 177 aa7.82□□□□□ -1.16
VPS35-201ENST00000299138 HSP90B1P14625 803 aaKnown RBP7.82□□□□□ -1.16
VPS35-201ENST00000299138 ZSCAN30Q86W11 494 aa7.82□□□□□ -1.16
VPS35-201ENST00000299138 API5Q9BZZ5 524 aaKnown RBP7.82□□□□□ -1.16
VPS35-201ENST00000299138 UNC13BO14795 1591 aa7.82□□□□□ -1.16
VPS35-201ENST00000299138 MCCP23508 829 aa7.82□□□□□ -1.16
VPS35-201ENST00000299138 RGL3Q3MIN7 710 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms