RNA–Protein interactions for RNA: ENST00000277817.10

HERC4-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,371 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-201ENST00000277817 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.27□□□□□ -1.73
HERC4-201ENST00000277817 FECHP22830 423 aa4.27□□□□□ -1.73
HERC4-201ENST00000277817 PRIM1P49642 420 aaKnown RBP4.27□□□□□ -1.73
HERC4-201ENST00000277817 CAPN15O75808 1086 aa4.27□□□□□ -1.73
HERC4-201ENST00000277817 USP54Q70EL1 1684 aa4.26□□□□□ -1.73
HERC4-201ENST00000277817 AEBP1Q8IUX7 1158 aa4.26□□□□□ -1.73
HERC4-201ENST00000277817 MARF1Q9Y4F3 1742 aaKnown RBP4.26□□□□□ -1.73
HERC4-201ENST00000277817 NUP153P49790 1475 aaKnown RBP4.26□□□□□ -1.73
HERC4-201ENST00000277817 COL22A1Q8NFW1 1626 aaPredicted RBP4.26□□□□□ -1.73
HERC4-201ENST00000277817 PLEKHH2Q8IVE3 1493 aa4.26□□□□□ -1.73
HERC4-201ENST00000277817 LMTK2Q8IWU2 1503 aa4.26□□□□□ -1.73
HERC4-201ENST00000277817 UBR1Q8IWV7 1749 aa4.26□□□□□ -1.73
HERC4-201ENST00000277817 SPATA31D1Q6ZQQ2 1576 aa4.26□□□□□ -1.73
HERC4-201ENST00000277817 ZEB1P37275 1124 aaPredicted RBP4.26□□□□□ -1.73
HERC4-201ENST00000277817 DCAF8Q5TAQ9 597 aa4.26□□□□□ -1.73
HERC4-201ENST00000277817 ZFYVE16Q7Z3T8 1539 aa4.26□□□□□ -1.73
HERC4-201ENST00000277817 RGPD3A6NKT7 1758 aaPredicted RBP4.25□□□□□ -1.73
HERC4-201ENST00000277817 RGPD4Q7Z3J3 1758 aa4.25□□□□□ -1.73
HERC4-201ENST00000277817 SPDYE16A6NNV3 312 aaPredicted RBP4.25□□□□□ -1.73
HERC4-201ENST00000277817 PDAP1Q13442 181 aaKnown RBP4.25□□□□□ -1.73
HERC4-201ENST00000277817 ZNF579Q8NAF0 562 aaKnown RBP4.25□□□□□ -1.73
HERC4-201ENST00000277817 SIRT1Q96EB6 747 aa4.25□□□□□ -1.73
HERC4-201ENST00000277817 PDE4AP27815 886 aa4.25□□□□□ -1.73
HERC4-201ENST00000277817 PHLDB3Q6NSJ2 640 aa4.25□□□□□ -1.73
HERC4-201ENST00000277817 EFCAB6Q5THR3 1501 aa4.25□□□□□ -1.73
HERC4-201ENST00000277817 CANXP27824 592 aaKnown RBP4.25□□□□□ -1.73
HERC4-201ENST00000277817 SPATA32Q96LK8 384 aa4.25□□□□□ -1.73
HERC4-201ENST00000277817 SETD1BQ9UPS6 1966 aaKnown RBP4.24□□□□□ -1.73
HERC4-201ENST00000277817 PYGBP11216 843 aa4.24□□□□□ -1.73
HERC4-201ENST00000277817 PDE4CQ08493 712 aa4.24□□□□□ -1.73
HERC4-201ENST00000277817 PHOX2BQ99453 314 aa4.24□□□□□ -1.73
HERC4-201ENST00000277817 ATP10BO94823 1461 aa4.24□□□□□ -1.73
HERC4-201ENST00000277817 GIGYF2Q6Y7W6 1299 aaKnown RBP4.24□□□□□ -1.73
HERC4-201ENST00000277817 DDX27Q96GQ7 796 aaKnown RBP4.24□□□□□ -1.73
HERC4-201ENST00000277817 CRYBG1Q9Y4K1 1723 aa4.24□□□□□ -1.73
HERC4-201ENST00000277817 SUPT6HQ7KZ85 1726 aaKnown RBP4.23□□□□□ -1.73
HERC4-201ENST00000277817 SAMD9LQ8IVG5 1584 aa4.23□□□□□ -1.73
HERC4-201ENST00000277817 KIF27Q86VH2 1401 aa4.23□□□□□ -1.73
HERC4-201ENST00000277817 MTMR14Q8NCE2 650 aa4.23□□□□□ -1.73
HERC4-201ENST00000277817 DNMT1P26358 1616 aaKnown RBP4.23□□□□□ -1.73
HERC4-201ENST00000277817 DIP2AQ14689 1571 aa4.23□□□□□ -1.73
HERC4-201ENST00000277817 ZNF518AQ6AHZ1 1483 aa4.23□□□□□ -1.73
HERC4-201ENST00000277817 POGZQ7Z3K3 1410 aa4.23□□□□□ -1.73
HERC4-201ENST00000277817 TDRD9Q8NDG6 1382 aaKnown RBP4.23□□□□□ -1.73
HERC4-201ENST00000277817 ZNF467Q7Z7K2 595 aaPredicted RBP4.23□□□□□ -1.73
HERC4-201ENST00000277817 PBXIP1Q96AQ6 731 aa4.23□□□□□ -1.73
HERC4-201ENST00000277817 CCDC61Q9Y6R9 512 aa4.23□□□□□ -1.73
HERC4-201ENST00000277817 LRP5O75197 1615 aa4.23□□□□□ -1.73
HERC4-201ENST00000277817 CPS1P31327 1500 aa4.22□□□□□ -1.73
HERC4-201ENST00000277817 LDLRAD1Q5T700 205 aa4.22□□□□□ -1.73
HERC4-201ENST00000277817 LARP6Q9BRS8 491 aaKnown RBP4.22□□□□□ -1.73
HERC4-201ENST00000277817 SNRKQ9NRH2 765 aa4.22□□□□□ -1.73
HERC4-201ENST00000277817 NHSL1Q5SYE7 1610 aa4.22□□□□□ -1.73
HERC4-201ENST00000277817 SLIT1O75093 1534 aa4.22□□□□□ -1.73
HERC4-201ENST00000277817 GCC2Q8IWJ2 1684 aa4.22□□□□□ -1.73
HERC4-201ENST00000277817 CD109Q6YHK3 1445 aa4.22□□□□□ -1.73
HERC4-201ENST00000277817 IFT172Q9UG01 1749 aa4.22□□□□□ -1.73
HERC4-201ENST00000277817 PRDM15P57071 1507 aaPredicted RBP4.22□□□□□ -1.73
HERC4-201ENST00000277817 TET3O43151 1660 aa4.21□□□□□ -1.73
HERC4-201ENST00000277817 NPDC1Q9NQX5 325 aaPredicted RBP4.21□□□□□ -1.73
HERC4-201ENST00000277817 ATP1B4Q9UN42 357 aaPredicted RBP4.21□□□□□ -1.73
HERC4-201ENST00000277817 PHF8Q9UPP1 1060 aa4.21□□□□□ -1.73
HERC4-201ENST00000277817 KIF3CO14782 793 aa4.21□□□□□ -1.74
HERC4-201ENST00000277817 PTGDRQ13258 359 aa4.21□□□□□ -1.74
HERC4-201ENST00000277817 PROCA1Q8NCQ7 364 aaPredicted RBP4.21□□□□□ -1.74
HERC4-201ENST00000277817 FARP1Q9Y4F1 1045 aaPredicted RBP4.21□□□□□ -1.74
HERC4-201ENST00000277817 CHD2O14647 1828 aaKnown RBP4.21□□□□□ -1.74
HERC4-201ENST00000277817 GNPATO15228 680 aa4.21□□□□□ -1.74
HERC4-201ENST00000277817 NLRP6P59044 892 aa4.21□□□□□ -1.74
HERC4-201ENST00000277817 GJD4Q96KN9 370 aaPredicted RBP4.21□□□□□ -1.74
HERC4-201ENST00000277817 PCMTD1Q96MG8 357 aaPredicted RBP4.21□□□□□ -1.74
HERC4-201ENST00000277817 GPHNQ9NQX3 736 aaPredicted RBP4.21□□□□□ -1.74
HERC4-201ENST00000277817 KNDC1Q76NI1 1749 aa4.21□□□□□ -1.74
HERC4-201ENST00000277817 IQGAP1P46940 1657 aa4.21□□□□□ -1.74
HERC4-201ENST00000277817 ELOAQ14241 798 aaKnown RBP4.21□□□□□ -1.74
HERC4-201ENST00000277817 POM121CA8CG34 1229 aa4.2□□□□□ -1.74
HERC4-201ENST00000277817 CENPBP07199 599 aaPredicted RBP4.2□□□□□ -1.74
HERC4-201ENST00000277817 EFCAB3Q8N7B9 438 aa4.2□□□□□ -1.74
HERC4-201ENST00000277817 KRI1Q8N9T8 703 aaKnown RBP4.2□□□□□ -1.74
HERC4-201ENST00000277817 CCDC97Q96F63 343 aaPredicted RBP4.2□□□□□ -1.74
HERC4-201ENST00000277817 FANCAO15360 1455 aa4.2□□□□□ -1.74
HERC4-201ENST00000277817 ARHGAP23Q9P227 1491 aa4.2□□□□□ -1.74
HERC4-201ENST00000277817 NPAS4Q8IUM7 802 aa4.2□□□□□ -1.74
HERC4-201ENST00000277817 SLAIN2Q9P270 581 aa4.2□□□□□ -1.74
HERC4-201ENST00000277817 ATG7O95352 703 aa4.19□□□□□ -1.74
HERC4-201ENST00000277817 CARMIL2Q6F5E8 1435 aa4.19□□□□□ -1.74
HERC4-201ENST00000277817 UNC13BO14795 1591 aa4.19□□□□□ -1.74
HERC4-201ENST00000277817 YTHDC1Q96MU7 727 aaKnown RBP4.19□□□□□ -1.74
HERC4-201ENST00000277817 NCOA1Q15788 1441 aa4.19□□□□□ -1.74
HERC4-201ENST00000277817 XRN1Q8IZH2 1706 aaKnown RBP4.19□□□□□ -1.74
HERC4-201ENST00000277817 CAMSAP1Q5T5Y3 1602 aa4.19□□□□□ -1.74
HERC4-201ENST00000277817 HIC1Q14526 733 aa4.19□□□□□ -1.74
HERC4-201ENST00000277817 QSER1Q2KHR3 1735 aa4.19□□□□□ -1.74
HERC4-201ENST00000277817 CCDC27Q2M243 656 aa4.18□□□□□ -1.74
HERC4-201ENST00000277817 GLMNQ92990 594 aa4.18□□□□□ -1.74
HERC4-201ENST00000277817 C9orf84Q5VXU9 1444 aa4.18□□□□□ -1.74
HERC4-201ENST00000277817 ERCC3P19447 782 aa4.18□□□□□ -1.74
HERC4-201ENST00000277817 DHX37Q8IY37 1157 aaKnown RBP4.18□□□□□ -1.74
HERC4-201ENST00000277817 CLTCQ00610 1675 aaKnown RBP4.18□□□□□ -1.74
HERC4-201ENST00000277817 PSEN1P49768 467 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms