RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 ABCC5O15440 1437 aa17.19■□□□□ 0.34
CDH3-201ENST00000264012 EXOSC9Q06265 439 aaKnown RBP17.18■□□□□ 0.34
CDH3-201ENST00000264012 CCDC184Q52MB2 194 aa17.18■□□□□ 0.34
CDH3-201ENST00000264012 CAMSAP2Q08AD1 1489 aa17.18■□□□□ 0.34
CDH3-201ENST00000264012 CCDC34Q96HJ3 373 aa17.18■□□□□ 0.34
CDH3-201ENST00000264012 SYTL4Q96C24 671 aaPredicted RBP17.17■□□□□ 0.34
CDH3-201ENST00000264012 G3BP1Q13283 466 aaKnown RBP eCLIP17.17■□□□□ 0.34
CDH3-201ENST00000264012 GPRASP1Q5JY77 1395 aa17.17■□□□□ 0.34
CDH3-201ENST00000264012 THEMISQ8N1K5 641 aaPredicted RBP17.17■□□□□ 0.34
CDH3-201ENST00000264012 G3V3G9 751 aa17.16■□□□□ 0.34
CDH3-201ENST00000264012 DCAF8Q5TAQ9 597 aa17.16■□□□□ 0.34
CDH3-201ENST00000264012 URB2Q14146 1524 aaKnown RBP17.16■□□□□ 0.34
CDH3-201ENST00000264012 GAS2L2Q8NHY3 880 aa17.16■□□□□ 0.34
CDH3-201ENST00000264012 ZKSCAN1P17029 563 aaPredicted RBP17.16■□□□□ 0.34
CDH3-201ENST00000264012 ESCO1Q5FWF5 840 aa17.16■□□□□ 0.34
CDH3-201ENST00000264012 ANO2Q9NQ90 1003 aa17.15■□□□□ 0.34
CDH3-201ENST00000264012 DDX49Q9Y6V7 483 aaKnown RBP17.15■□□□□ 0.34
CDH3-201ENST00000264012 LRRFIP1Q32MZ4 808 aaKnown RBP17.15■□□□□ 0.34
CDH3-201ENST00000264012 PTPN23Q9H3S7 1636 aa17.15■□□□□ 0.34
CDH3-201ENST00000264012 PHF14O94880 888 aa17.15■□□□□ 0.34
CDH3-201ENST00000264012 HSP90AB4PQ58FF6 505 aa17.15■□□□□ 0.34
CDH3-201ENST00000264012 ZNF692Q9BU19 519 aaPredicted RBP17.15■□□□□ 0.34
CDH3-201ENST00000264012 SF3A1Q15459 793 aaKnown RBP17.14■□□□□ 0.33
CDH3-201ENST00000264012 H3BQV1 296 aa17.14■□□□□ 0.33
CDH3-201ENST00000264012 TPM4P67936 248 aa17.14■□□□□ 0.33
CDH3-201ENST00000264012 IFFO2Q5TF58 517 aa17.14■□□□□ 0.33
CDH3-201ENST00000264012 ATP6V1DQ9Y5K8 247 aa17.14■□□□□ 0.33
CDH3-201ENST00000264012 FAM184AQ8NB25 1140 aa17.14■□□□□ 0.33
CDH3-201ENST00000264012 FOXD4L6Q3SYB3 417 aaPredicted RBP17.13■□□□□ 0.33
CDH3-201ENST00000264012 INTS3Q68E01 1043 aaKnown RBP17.13■□□□□ 0.33
CDH3-201ENST00000264012 FOXD4L3Q6VB84 417 aaPredicted RBP17.13■□□□□ 0.33
CDH3-201ENST00000264012 TSR2Q969E8 191 aaKnown RBP17.13■□□□□ 0.33
CDH3-201ENST00000264012 UBTFL1P0CB47 393 aaPredicted RBP17.13■□□□□ 0.33
CDH3-201ENST00000264012 AIMP1Q12904 312 aaKnown RBP17.13■□□□□ 0.33
CDH3-201ENST00000264012 PDE3AQ14432 1141 aa17.13■□□□□ 0.33
CDH3-201ENST00000264012 TWISTNBQ3B726 338 aaPredicted RBP17.12■□□□□ 0.33
CDH3-201ENST00000264012 RIC3Q7Z5B4 369 aa17.12■□□□□ 0.33
CDH3-201ENST00000264012 PROSER2Q86WR7 435 aaPredicted RBP17.12■□□□□ 0.33
CDH3-201ENST00000264012 CHMP4CQ96CF2 233 aa17.12■□□□□ 0.33
CDH3-201ENST00000264012 RTEL1-TNFRSF6BF6WH68 1400 aa17.12■□□□□ 0.33
CDH3-201ENST00000264012 AKNAQ7Z591 1439 aa17.12■□□□□ 0.33
CDH3-201ENST00000264012 SLC26A8Q96RN1 970 aa17.12■□□□□ 0.33
CDH3-201ENST00000264012 SULT6B1Q6IMI4 303 aa17.11■□□□□ 0.33
CDH3-201ENST00000264012 BCAR3O75815 825 aa17.11■□□□□ 0.33
CDH3-201ENST00000264012 CLSTN1O94985 981 aa17.11■□□□□ 0.33
CDH3-201ENST00000264012 C22orf23Q9BZE7 217 aa17.11■□□□□ 0.33
CDH3-201ENST00000264012 RASSF8Q8NHQ8 419 aa17.11■□□□□ 0.33
CDH3-201ENST00000264012 CCDC30Q5VVM6 783 aa17.1■□□□□ 0.33
CDH3-201ENST00000264012 ATAD2Q6PL18 1390 aa17.1■□□□□ 0.33
CDH3-201ENST00000264012 SKOR2Q2VWA4 1001 aaPredicted RBP17.1■□□□□ 0.33
CDH3-201ENST00000264012 NCOA1Q15788 1441 aa17.1■□□□□ 0.33
CDH3-201ENST00000264012 CHMP5Q9NZZ3 219 aa17.1■□□□□ 0.33
CDH3-201ENST00000264012 ZNF608Q9ULD9 1512 aaPredicted RBP17.09■□□□□ 0.33
CDH3-201ENST00000264012 ERC2O15083 957 aa17.09■□□□□ 0.33
CDH3-201ENST00000264012 GNAI3P08754 354 aa17.09■□□□□ 0.33
CDH3-201ENST00000264012 PLEKHO1Q53GL0 409 aaPredicted RBP17.09■□□□□ 0.33
CDH3-201ENST00000264012 WDR63Q8IWG1 891 aa17.09■□□□□ 0.33
CDH3-201ENST00000264012 CD109Q6YHK3 1445 aa17.08■□□□□ 0.33
CDH3-201ENST00000264012 C11orf95C9JLR9 678 aaPredicted RBP17.08■□□□□ 0.32
CDH3-201ENST00000264012 GSE1Q14687 1217 aa17.08■□□□□ 0.32
CDH3-201ENST00000264012 BIVM-ERCC5R4GMW8 1640 aa17.08■□□□□ 0.32
CDH3-201ENST00000264012 KIF14Q15058 1648 aa17.08■□□□□ 0.32
CDH3-201ENST00000264012 RNF20Q5VTR2 975 aa17.08■□□□□ 0.32
CDH3-201ENST00000264012 CDC45O75419 566 aa17.07■□□□□ 0.32
CDH3-201ENST00000264012 NOB1Q9ULX3 412 aaKnown RBP17.07■□□□□ 0.32
CDH3-201ENST00000264012 CPLX2Q6PUV4 134 aaKnown RBP17.06■□□□□ 0.32
CDH3-201ENST00000264012 PDZRN3Q9UPQ7 1066 aa17.06■□□□□ 0.32
CDH3-201ENST00000264012 SMG6Q86US8 1419 aaKnown RBP17.06■□□□□ 0.32
CDH3-201ENST00000264012 APPP05067 770 aa17.06■□□□□ 0.32
CDH3-201ENST00000264012 SYNE3Q6ZMZ3 975 aa17.05■□□□□ 0.32
CDH3-201ENST00000264012 NSD3Q9BZ95 1437 aa17.05■□□□□ 0.32
CDH3-201ENST00000264012 MCTP1Q6DN14 999 aa17.05■□□□□ 0.32
CDH3-201ENST00000264012 ADGRL1O94910 1474 aa17.05■□□□□ 0.32
CDH3-201ENST00000264012 AEBP2Q6ZN18 517 aaPredicted RBP17.05■□□□□ 0.32
CDH3-201ENST00000264012 AKAP17AQ02040 695 aaKnown RBP17.04■□□□□ 0.32
CDH3-201ENST00000264012 CT47B1P0C2W7 299 aaPredicted RBP17.04■□□□□ 0.32
CDH3-201ENST00000264012 SURF6O75683 361 aaKnown RBP17.04■□□□□ 0.32
CDH3-201ENST00000264012 C1orf115Q9H7X2 142 aa17.04■□□□□ 0.32
CDH3-201ENST00000264012 RSPH6AQ9H0K4 717 aa17.03■□□□□ 0.32
CDH3-201ENST00000264012 SLC4A2P04920 1241 aa17.03■□□□□ 0.32
CDH3-201ENST00000264012 RRS1Q15050 365 aaKnown RBP17.03■□□□□ 0.32
CDH3-201ENST00000264012 NEUROD6Q96NK8 337 aa17.03■□□□□ 0.32
CDH3-201ENST00000264012 CCDC61Q9Y6R9 512 aa17.03■□□□□ 0.32
CDH3-201ENST00000264012 ANKLE2Q86XL3 938 aa17.03■□□□□ 0.32
CDH3-201ENST00000264012 MSH5O43196 834 aa17.02■□□□□ 0.32
CDH3-201ENST00000264012 CLASRPQ8N2M8 674 aaKnown RBP17.02■□□□□ 0.32
CDH3-201ENST00000264012 HDGFL1Q5TGJ6 251 aa17.02■□□□□ 0.32
CDH3-201ENST00000264012 CPLX1O14810 134 aa17.02■□□□□ 0.31
CDH3-201ENST00000264012 VPS37DQ86XT2 251 aa17.02■□□□□ 0.31
CDH3-201ENST00000264012 TRDNQ13061 729 aa17.01■□□□□ 0.31
CDH3-201ENST00000264012 ATF7IPQ6VMQ6 1270 aa17.01■□□□□ 0.31
CDH3-201ENST00000264012 FCHSD2O94868 740 aa17.01■□□□□ 0.31
CDH3-201ENST00000264012 NUDT16Q96DE0 195 aaKnown RBP17.01■□□□□ 0.31
CDH3-201ENST00000264012 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.01■□□□□ 0.31
CDH3-201ENST00000264012 POGZQ7Z3K3 1410 aa17.01■□□□□ 0.31
CDH3-201ENST00000264012 NUCB2P80303 420 aa17■□□□□ 0.31
CDH3-201ENST00000264012 GCC1Q96CN9 775 aa17■□□□□ 0.31
CDH3-201ENST00000264012 CREBRFQ8IUR6 639 aa17■□□□□ 0.31
CDH3-201ENST00000264012 MARCH6O60337 910 aa17■□□□□ 0.31
CDH3-201ENST00000264012 GNAI2P04899 355 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms