RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 DHX57Q6P158 1386 aaKnown RBP23.52■■□□□ 1.36
USE1-201ENST00000263897 STAC3Q96MF2 364 aa23.52■■□□□ 1.36
USE1-201ENST00000263897 KDM2AQ9Y2K7 1162 aa23.52■■□□□ 1.36
USE1-201ENST00000263897 NHSL1Q5SYE7 1610 aa23.51■■□□□ 1.35
USE1-201ENST00000263897 PLEKHH1Q9ULM0 1364 aa23.5■■□□□ 1.35
USE1-201ENST00000263897 SHPRHQ149N8 1683 aa23.49■■□□□ 1.35
USE1-201ENST00000263897 KNDC1Q76NI1 1749 aa23.49■■□□□ 1.35
USE1-201ENST00000263897 LAMC1P11047 1609 aa23.48■■□□□ 1.35
USE1-201ENST00000263897 POTEAQ6S8J7 498 aa23.47■■□□□ 1.35
USE1-201ENST00000263897 CDC42BPGQ6DT37 1551 aa23.47■■□□□ 1.35
USE1-201ENST00000263897 ESCO1Q5FWF5 840 aa23.46■■□□□ 1.35
USE1-201ENST00000263897 LRP6O75581 1613 aa23.45■■□□□ 1.34
USE1-201ENST00000263897 SOS2Q07890 1332 aaPredicted RBP23.44■■□□□ 1.34
USE1-201ENST00000263897 NUTM2BA6NNL0 878 aaPredicted RBP23.44■■□□□ 1.34
USE1-201ENST00000263897 NUTM2EB1AL46 878 aaPredicted RBP23.44■■□□□ 1.34
USE1-201ENST00000263897 MEX3CQ5U5Q3 659 aaKnown RBP23.44■■□□□ 1.34
USE1-201ENST00000263897 NUTM2AQ8IVF1 878 aaPredicted RBP23.44■■□□□ 1.34
USE1-201ENST00000263897 NUTM2FA1L443 756 aa23.42■■□□□ 1.34
USE1-201ENST00000263897 PRAM1Q96QH2 718 aa23.42■■□□□ 1.34
USE1-201ENST00000263897 PNPLA6Q8IY17 1366 aa23.4■■□□□ 1.34
USE1-201ENST00000263897 POGKQ9P215 609 aa23.4■■□□□ 1.34
USE1-201ENST00000263897 SAFB2Q14151 953 aaKnown RBP eCLIP23.39■■□□□ 1.33
USE1-201ENST00000263897 ADGRB1O14514 1584 aa23.39■■□□□ 1.33
USE1-201ENST00000263897 NPHP3Q7Z494 1330 aa23.38■■□□□ 1.33
USE1-201ENST00000263897 FOXO3O43524 673 aa23.38■■□□□ 1.33
USE1-201ENST00000263897 TRAK1Q9UPV9 953 aa23.38■■□□□ 1.33
USE1-201ENST00000263897 DLC1Q96QB1 1528 aa23.38■■□□□ 1.33
USE1-201ENST00000263897 ZNF772Q68DY9 489 aaPredicted RBP23.36■■□□□ 1.33
USE1-201ENST00000263897 FMN2Q9NZ56 1722 aa23.36■■□□□ 1.33
USE1-201ENST00000263897 XPCQ01831 940 aaPredicted RBP23.32■■□□□ 1.32
USE1-201ENST00000263897 PXDNQ92626 1479 aa23.31■■□□□ 1.32
USE1-201ENST00000263897 PHF8Q9UPP1 1060 aa23.29■■□□□ 1.32
USE1-201ENST00000263897 RGPD8O14715 1765 aaPredicted RBP23.29■■□□□ 1.32
USE1-201ENST00000263897 AFF2P51816 1311 aa23.29■■□□□ 1.32
USE1-201ENST00000263897 C8orf37Q96NL8 207 aa23.28■■□□□ 1.32
USE1-201ENST00000263897 HIRIP3Q9BW71 556 aaPredicted RBP23.28■■□□□ 1.32
USE1-201ENST00000263897 MINK1Q8N4C8 1332 aaPredicted RBP23.28■■□□□ 1.32
USE1-201ENST00000263897 ADAMTS2O95450 1211 aa23.27■■□□□ 1.32
USE1-201ENST00000263897 KRT28Q7Z3Y7 464 aa23.27■■□□□ 1.32
USE1-201ENST00000263897 NGLY1Q96IV0 654 aa23.26■■□□□ 1.31
USE1-201ENST00000263897 SIN3AQ96ST3 1273 aa23.26■■□□□ 1.31
USE1-201ENST00000263897 KIF1AQ12756 1690 aa23.25■■□□□ 1.31
USE1-201ENST00000263897 ADGRB2O60241 1585 aa23.24■■□□□ 1.31
USE1-201ENST00000263897 WASLO00401 505 aaPredicted RBP23.24■■□□□ 1.31
USE1-201ENST00000263897 NBPF1Q3BBV0 1214 aa23.24■■□□□ 1.31
USE1-201ENST00000263897 L3MBTL2Q969R5 705 aa23.24■■□□□ 1.31
USE1-201ENST00000263897 ANKARQ7Z5J8 1434 aa23.24■■□□□ 1.31
USE1-201ENST00000263897 COL22A1Q8NFW1 1626 aaPredicted RBP23.23■■□□□ 1.31
USE1-201ENST00000263897 RXRBP28702 533 aa23.23■■□□□ 1.31
USE1-201ENST00000263897 PSME1Q06323 249 aa23.23■■□□□ 1.31
USE1-201ENST00000263897 SPATA31A3Q5VYP0 1347 aa23.23■■□□□ 1.31
USE1-201ENST00000263897 KIAA1210Q9ULL0 1709 aa23.22■■□□□ 1.31
USE1-201ENST00000263897 NEUROD1Q13562 356 aa23.21■■□□□ 1.31
USE1-201ENST00000263897 PMFBP1Q8TBY8 1022 aa23.21■■□□□ 1.31
USE1-201ENST00000263897 QTRT2Q9H974 415 aaKnown RBP23.21■■□□□ 1.31
USE1-201ENST00000263897 USP32Q8NFA0 1604 aa23.2■■□□□ 1.3
USE1-201ENST00000263897 ARHGEF28Q8N1W1 1705 aaKnown RBP23.19■■□□□ 1.3
USE1-201ENST00000263897 EIF3AQ14152 1382 aaKnown RBP23.19■■□□□ 1.3
USE1-201ENST00000263897 PRR36Q9H6K5 1346 aa23.19■■□□□ 1.3
USE1-201ENST00000263897 TRIM26Q12899 539 aaPredicted RBP23.18■■□□□ 1.3
USE1-201ENST00000263897 FNBP4Q8N3X1 1017 aaPredicted RBP23.18■■□□□ 1.3
USE1-201ENST00000263897 USP21Q9UK80 565 aa23.16■■□□□ 1.3
USE1-201ENST00000263897 SBNO1A3KN83 1393 aa23.15■■□□□ 1.3
USE1-201ENST00000263897 TULP4Q9NRJ4 1543 aa23.15■■□□□ 1.3
USE1-201ENST00000263897 RBM6P78332 1123 aaKnown RBP23.15■■□□□ 1.3
USE1-201ENST00000263897 CDK19Q9BWU1 502 aa23.14■■□□□ 1.29
USE1-201ENST00000263897 NUDT16Q96DE0 195 aaKnown RBP23.13■■□□□ 1.29
USE1-201ENST00000263897 TNS3Q68CZ2 1445 aa23.13■■□□□ 1.29
USE1-201ENST00000263897 LMOD2Q6P5Q4 547 aa23.12■■□□□ 1.29
USE1-201ENST00000263897 CDK12Q9NYV4 1490 aaPredicted RBP23.11■■□□□ 1.29
USE1-201ENST00000263897 NGDNQ8NEJ9 315 aaKnown RBP23.11■■□□□ 1.29
USE1-201ENST00000263897 GPRASP1Q5JY77 1395 aa23.11■■□□□ 1.29
USE1-201ENST00000263897 CABLES1Q8TDN4 633 aa23.1■■□□□ 1.29
USE1-201ENST00000263897 TRPC5Q9UL62 973 aaPredicted RBP23.1■■□□□ 1.29
USE1-201ENST00000263897 ARHGEF10O15013 1369 aa23.1■■□□□ 1.29
USE1-201ENST00000263897 MARF1Q9Y4F3 1742 aaKnown RBP23.1■■□□□ 1.29
USE1-201ENST00000263897 CENPJQ9HC77 1338 aaPredicted RBP23.08■■□□□ 1.28
USE1-201ENST00000263897 BCL9LQ86UU0 1499 aa23.07■■□□□ 1.28
USE1-201ENST00000263897 HAP1P54257 671 aaPredicted RBP23.07■■□□□ 1.28
USE1-201ENST00000263897 ATP7BP35670 1465 aa23.06■■□□□ 1.28
USE1-201ENST00000263897 PLEKHG5O94827 1062 aa23.06■■□□□ 1.28
USE1-201ENST00000263897 CCDC61Q9Y6R9 512 aa23.06■■□□□ 1.28
USE1-201ENST00000263897 ATRNO75882 1429 aa23.04■■□□□ 1.28
USE1-201ENST00000263897 TRPM3Q9HCF6 1732 aaPredicted RBP23.04■■□□□ 1.28
USE1-201ENST00000263897 PLEKHG3A1L390 1219 aa23.03■■□□□ 1.28
USE1-201ENST00000263897 NBPF8Q3BBV2 869 aa23.03■■□□□ 1.28
USE1-201ENST00000263897 TRPM1Q7Z4N2 1603 aa23.03■■□□□ 1.28
USE1-201ENST00000263897 ITSN1Q15811 1721 aa23.02■■□□□ 1.28
USE1-201ENST00000263897 PAK3O75914 559 aaPredicted RBP23.02■■□□□ 1.28
USE1-201ENST00000263897 UNC5CLQ8IV45 518 aa23.02■■□□□ 1.28
USE1-201ENST00000263897 RGS12O14924 1447 aa23.01■■□□□ 1.27
USE1-201ENST00000263897 SRPK2P78362 688 aaKnown RBP23.01■■□□□ 1.27
USE1-201ENST00000263897 UPF1Q92900 1129 aaKnown RBP eCLIP23.01■■□□□ 1.27
USE1-201ENST00000263897 SLIT2O94813 1529 aa23.01■■□□□ 1.27
USE1-201ENST00000263897 ROCK2O75116 1388 aaKnown RBP23.01■■□□□ 1.27
USE1-201ENST00000263897 GJD4Q96KN9 370 aaPredicted RBP23■■□□□ 1.27
USE1-201ENST00000263897 ACEP12821 1306 aa23■■□□□ 1.27
USE1-201ENST00000263897 POLR3AO14802 1390 aaPredicted RBP23■■□□□ 1.27
USE1-201ENST00000263897 ALS2Q96Q42 1657 aa23■■□□□ 1.27
USE1-201ENST00000263897 FAM83GA6ND36 823 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms