RNA–Protein interactions for RNA: ENST00000258607.9

CKAP2-201, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CKAP2, Length 3,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-201ENST00000258607 PRKAR2BP31323 418 aa11.79□□□□□ -0.52
CKAP2-201ENST00000258607 C1orf115Q9H7X2 142 aa11.79□□□□□ -0.52
CKAP2-201ENST00000258607 WWC1Q8IX03 1113 aa11.78□□□□□ -0.52
CKAP2-201ENST00000258607 SMG6Q86US8 1419 aaKnown RBP11.78□□□□□ -0.52
CKAP2-201ENST00000258607 ITPRIPQ8IWB1 547 aa11.78□□□□□ -0.52
CKAP2-201ENST00000258607 FYB1O15117 783 aa11.78□□□□□ -0.52
CKAP2-201ENST00000258607 EXOSC9Q06265 439 aaKnown RBP11.77□□□□□ -0.53
CKAP2-201ENST00000258607 ANP32EQ9BTT0 268 aa11.77□□□□□ -0.53
CKAP2-201ENST00000258607 SLC52A1Q9NWF4 448 aa11.76□□□□□ -0.53
CKAP2-201ENST00000258607 KRT24Q2M2I5 525 aa11.76□□□□□ -0.53
CKAP2-201ENST00000258607 ZBTB47Q9UFB7 747 aaPredicted RBP11.76□□□□□ -0.53
CKAP2-201ENST00000258607 UHRF1BP1LA0JNW5 1464 aa11.76□□□□□ -0.53
CKAP2-201ENST00000258607 USHBP1Q8N6Y0 703 aa11.75□□□□□ -0.53
CKAP2-201ENST00000258607 AEBP1Q8IUX7 1158 aa11.75□□□□□ -0.53
CKAP2-201ENST00000258607 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.75□□□□□ -0.53
CKAP2-201ENST00000258607 CEP152O94986 1710 aa11.75□□□□□ -0.53
CKAP2-201ENST00000258607 A0A0G2JS52 829 aa11.75□□□□□ -0.53
CKAP2-201ENST00000258607 DIAPH1O60610 1272 aaKnown RBP11.75□□□□□ -0.53
CKAP2-201ENST00000258607 LTKP29376 864 aa11.75□□□□□ -0.53
CKAP2-201ENST00000258607 RTEL1-TNFRSF6BF6WH68 1400 aa11.74□□□□□ -0.53
CKAP2-201ENST00000258607 GPRASP1Q5JY77 1395 aa11.74□□□□□ -0.53
CKAP2-201ENST00000258607 PDE4AP27815 886 aa11.74□□□□□ -0.53
CKAP2-201ENST00000258607 NUDT16Q96DE0 195 aaKnown RBP11.74□□□□□ -0.53
CKAP2-201ENST00000258607 A0A1W2PP64 1363 aa11.74□□□□□ -0.53
CKAP2-201ENST00000258607 RLBP1P12271 317 aa11.74□□□□□ -0.53
CKAP2-201ENST00000258607 SLFN5Q08AF3 891 aa11.74□□□□□ -0.53
CKAP2-201ENST00000258607 PHACTR3Q96KR7 559 aa11.74□□□□□ -0.53
CKAP2-201ENST00000258607 TRPM1Q7Z4N2 1603 aa11.73□□□□□ -0.53
CKAP2-201ENST00000258607 RUNDC1Q96C34 613 aa11.73□□□□□ -0.53
CKAP2-201ENST00000258607 LRPPRCP42704 1394 aaKnown RBP11.72□□□□□ -0.53
CKAP2-201ENST00000258607 ERVK-7P63135 1459 aa11.72□□□□□ -0.53
CKAP2-201ENST00000258607 MCM10Q7L590 875 aa11.71□□□□□ -0.53
CKAP2-201ENST00000258607 COG3Q96JB2 828 aa11.71□□□□□ -0.53
CKAP2-201ENST00000258607 IQGAP3Q86VI3 1631 aa11.71□□□□□ -0.53
CKAP2-201ENST00000258607 IGHDP01880 384 aa11.71□□□□□ -0.53
CKAP2-201ENST00000258607 SULT6B1Q6IMI4 303 aa11.71□□□□□ -0.53
CKAP2-201ENST00000258607 EID1Q9Y6B2 187 aa11.71□□□□□ -0.54
CKAP2-201ENST00000258607 KIDINS220Q9ULH0 1771 aa11.7□□□□□ -0.54
CKAP2-201ENST00000258607 PDE3BQ13370 1112 aa11.7□□□□□ -0.54
CKAP2-201ENST00000258607 HSP90AB2PQ58FF8 381 aa11.7□□□□□ -0.54
CKAP2-201ENST00000258607 SLC4A10Q6U841 1118 aa11.7□□□□□ -0.54
CKAP2-201ENST00000258607 E9PSI1 815 aa11.7□□□□□ -0.54
CKAP2-201ENST00000258607 AEBP2Q6ZN18 517 aaPredicted RBP11.7□□□□□ -0.54
CKAP2-201ENST00000258607 GOLGB1Q14789 3259 aaKnown RBP11.7□□□□□ -0.54
CKAP2-201ENST00000258607 METP08581 1390 aa11.7□□□□□ -0.54
CKAP2-201ENST00000258607 FOXO3O43524 673 aa11.69□□□□□ -0.54
CKAP2-201ENST00000258607 AMPHP49418 695 aa11.69□□□□□ -0.54
CKAP2-201ENST00000258607 NLRP6P59044 892 aa11.69□□□□□ -0.54
CKAP2-201ENST00000258607 DDX17Q92841 729 aaKnown RBP11.69□□□□□ -0.54
CKAP2-201ENST00000258607 AMOTL2Q9Y2J4 779 aa11.69□□□□□ -0.54
CKAP2-201ENST00000258607 NOP58Q9Y2X3 529 aaKnown RBP11.69□□□□□ -0.54
CKAP2-201ENST00000258607 ZMYM3Q14202 1370 aa11.69□□□□□ -0.54
CKAP2-201ENST00000258607 UNC13BO14795 1591 aa11.69□□□□□ -0.54
CKAP2-201ENST00000258607 SLKQ9H2G2 1235 aaPredicted RBP11.68□□□□□ -0.54
CKAP2-201ENST00000258607 PTPRTO14522 1441 aa11.68□□□□□ -0.54
CKAP2-201ENST00000258607 TMPOP42166 694 aaKnown RBP11.68□□□□□ -0.54
CKAP2-201ENST00000258607 PPRC1Q5VV67 1664 aaKnown RBP11.68□□□□□ -0.54
CKAP2-201ENST00000258607 PLXNC1O60486 1568 aa11.68□□□□□ -0.54
CKAP2-201ENST00000258607 TRPM2O94759 1503 aa11.68□□□□□ -0.54
CKAP2-201ENST00000258607 ASXL1Q8IXJ9 1541 aa11.68□□□□□ -0.54
CKAP2-201ENST00000258607 TSPYL6Q8N831 410 aa11.67□□□□□ -0.54
CKAP2-201ENST00000258607 WASLO00401 505 aaPredicted RBP11.67□□□□□ -0.54
CKAP2-201ENST00000258607 TPRNQ4KMQ1 711 aa11.67□□□□□ -0.54
CKAP2-201ENST00000258607 RTL5Q5HYW3 569 aaPredicted RBP11.67□□□□□ -0.54
CKAP2-201ENST00000258607 NOB1Q9ULX3 412 aaKnown RBP11.67□□□□□ -0.54
CKAP2-201ENST00000258607 SSH1Q8WYL5 1049 aa11.66□□□□□ -0.54
CKAP2-201ENST00000258607 POLKQ9UBT6 870 aa11.66□□□□□ -0.54
CKAP2-201ENST00000258607 HSPA2P54652 639 aa11.66□□□□□ -0.54
CKAP2-201ENST00000258607 ESCO1Q5FWF5 840 aa11.66□□□□□ -0.54
CKAP2-201ENST00000258607 SPHKAPQ2M3C7 1700 aa11.65□□□□□ -0.54
CKAP2-201ENST00000258607 ABCA9Q8IUA7 1624 aa11.65□□□□□ -0.54
CKAP2-201ENST00000258607 MYT1Q01538 1121 aa11.65□□□□□ -0.54
CKAP2-201ENST00000258607 FOXD4L1Q9NU39 408 aa11.65□□□□□ -0.54
CKAP2-201ENST00000258607 SETD1BQ9UPS6 1966 aaKnown RBP11.65□□□□□ -0.54
CKAP2-201ENST00000258607 ATAD2Q6PL18 1390 aa11.65□□□□□ -0.54
CKAP2-201ENST00000258607 ABTB2Q8N961 1025 aa11.65□□□□□ -0.54
CKAP2-201ENST00000258607 LNPKQ9C0E8 428 aa11.65□□□□□ -0.54
CKAP2-201ENST00000258607 CCDC61Q9Y6R9 512 aa11.65□□□□□ -0.54
CKAP2-201ENST00000258607 ACEP12821 1306 aa11.64□□□□□ -0.55
CKAP2-201ENST00000258607 KCNA6P17658 529 aa11.64□□□□□ -0.55
CKAP2-201ENST00000258607 PCDHB15Q9Y5E8 787 aa11.64□□□□□ -0.55
CKAP2-201ENST00000258607 YTHDC2Q9H6S0 1430 aaKnown RBP11.64□□□□□ -0.55
CKAP2-201ENST00000258607 RIMS2Q9UQ26 1411 aa11.64□□□□□ -0.55
CKAP2-201ENST00000258607 ABCA6Q8N139 1617 aa11.64□□□□□ -0.55
CKAP2-201ENST00000258607 MADDQ8WXG6 1647 aa11.64□□□□□ -0.55
CKAP2-201ENST00000258607 RARSP54136 660 aaKnown RBP11.64□□□□□ -0.55
CKAP2-201ENST00000258607 RNF17Q9BXT8 1623 aaKnown RBP11.64□□□□□ -0.55
CKAP2-201ENST00000258607 ABCC3O15438 1527 aa11.64□□□□□ -0.55
CKAP2-201ENST00000258607 EFCAB6Q5THR3 1501 aa11.64□□□□□ -0.55
CKAP2-201ENST00000258607 FANCIQ9NVI1 1328 aa11.63□□□□□ -0.55
CKAP2-201ENST00000258607 RPGRIP1LQ68CZ1 1315 aa11.63□□□□□ -0.55
CKAP2-201ENST00000258607 MROH2AA6NES4 1674 aa11.63□□□□□ -0.55
CKAP2-201ENST00000258607 EIF2S2P20042 333 aaKnown RBP11.63□□□□□ -0.55
CKAP2-201ENST00000258607 MFAP1P55081 439 aaKnown RBP11.63□□□□□ -0.55
CKAP2-201ENST00000258607 MYH16Q9H6N6 1097 aa11.63□□□□□ -0.55
CKAP2-201ENST00000258607 NGEFQ8N5V2 710 aa11.62□□□□□ -0.55
CKAP2-201ENST00000258607 RTN4Q9NQC3 1192 aaKnown RBP11.62□□□□□ -0.55
CKAP2-201ENST00000258607 PIK3C2GO75747 1445 aa11.62□□□□□ -0.55
CKAP2-201ENST00000258607 HECW2Q9P2P5 1572 aa11.62□□□□□ -0.55
CKAP2-201ENST00000258607 ZC3H6P61129 1189 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms