RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 ALKQ9UM73 1620 aa29.28■■■□□ 2.28
CCDC9-201ENST00000221922 NOP58Q9Y2X3 529 aaKnown RBP29.27■■■□□ 2.28
CCDC9-201ENST00000221922 PTPRMP28827 1452 aa29.27■■■□□ 2.28
CCDC9-201ENST00000221922 NSD3Q9BZ95 1437 aa29.27■■■□□ 2.28
CCDC9-201ENST00000221922 YTHDC2Q9H6S0 1430 aaKnown RBP29.24■■■□□ 2.27
CCDC9-201ENST00000221922 STAG3Q9UJ98 1225 aa29.24■■■□□ 2.27
CCDC9-201ENST00000221922 SLC12A5Q9H2X9 1139 aa29.23■■■□□ 2.27
CCDC9-201ENST00000221922 ANP32AP39687 249 aaKnown RBP29.21■■■□□ 2.27
CCDC9-201ENST00000221922 MLECQ14165 292 aa29.21■■■□□ 2.27
CCDC9-201ENST00000221922 NINLQ9Y2I6 1382 aa29.2■■■□□ 2.27
CCDC9-201ENST00000221922 ANKRD36BQ8N2N9 1353 aa29.2■■■□□ 2.26
CCDC9-201ENST00000221922 TCERG1O14776 1098 aaKnown RBP29.19■■■□□ 2.26
CCDC9-201ENST00000221922 IPO9Q96P70 1041 aaKnown RBP29.19■■■□□ 2.26
CCDC9-201ENST00000221922 PLEKHH1Q9ULM0 1364 aa29.18■■■□□ 2.26
CCDC9-201ENST00000221922 RIMS2Q9UQ26 1411 aa29.18■■■□□ 2.26
CCDC9-201ENST00000221922 SETD1AO15047 1707 aaKnown RBP29.18■■■□□ 2.26
CCDC9-201ENST00000221922 ZNF521Q96K83 1311 aa29.18■■■□□ 2.26
CCDC9-201ENST00000221922 POLR3AO14802 1390 aaPredicted RBP29.17■■■□□ 2.26
CCDC9-201ENST00000221922 ZMYM3Q14202 1370 aa29.17■■■□□ 2.26
CCDC9-201ENST00000221922 STK26Q9P289 416 aa29.16■■■□□ 2.26
CCDC9-201ENST00000221922 PAK3O75914 559 aaPredicted RBP29.16■■■□□ 2.26
CCDC9-201ENST00000221922 DLC1Q96QB1 1528 aa29.15■■■□□ 2.26
CCDC9-201ENST00000221922 NSD2O96028 1365 aa29.14■■■□□ 2.26
CCDC9-201ENST00000221922 ESF1Q9H501 851 aaKnown RBP29.14■■■□□ 2.26
CCDC9-201ENST00000221922 CGNL1Q0VF96 1302 aa29.14■■■□□ 2.26
CCDC9-201ENST00000221922 GOLGA2Q08379 1002 aa29.14■■■□□ 2.25
CCDC9-201ENST00000221922 NGEFQ8N5V2 710 aa29.14■■■□□ 2.25
CCDC9-201ENST00000221922 MORC1Q86VD1 984 aa29.11■■■□□ 2.25
CCDC9-201ENST00000221922 CABP2Q9NPB3 220 aa29.11■■■□□ 2.25
CCDC9-201ENST00000221922 ATAD2Q6PL18 1390 aa29.11■■■□□ 2.25
CCDC9-201ENST00000221922 MS4A1P11836 297 aa29.11■■■□□ 2.25
CCDC9-201ENST00000221922 PRAM1Q96QH2 718 aa29.11■■■□□ 2.25
CCDC9-201ENST00000221922 SAFB2Q14151 953 aaKnown RBP eCLIP29.09■■■□□ 2.25
CCDC9-201ENST00000221922 DUSP27Q5VZP5 1158 aa29.09■■■□□ 2.25
CCDC9-201ENST00000221922 NRXN3Q9Y4C0 1643 aa29.09■■■□□ 2.25
CCDC9-201ENST00000221922 POGKQ9P215 609 aa29.08■■■□□ 2.25
CCDC9-201ENST00000221922 SHPRHQ149N8 1683 aa29.08■■■□□ 2.25
CCDC9-201ENST00000221922 PLIN1O60240 522 aa29.06■■■□□ 2.24
CCDC9-201ENST00000221922 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.06■■■□□ 2.24
CCDC9-201ENST00000221922 BCL11AQ9H165 835 aa29.06■■■□□ 2.24
CCDC9-201ENST00000221922 SENP3Q9H4L4 574 aaPredicted RBP29.06■■■□□ 2.24
CCDC9-201ENST00000221922 SRPK2P78362 688 aaKnown RBP29.05■■■□□ 2.24
CCDC9-201ENST00000221922 TNRQ92752 1358 aa29.05■■■□□ 2.24
CCDC9-201ENST00000221922 CCDC146Q8IYE0 955 aa29.05■■■□□ 2.24
CCDC9-201ENST00000221922 ABCC11Q96J66 1382 aa29.04■■■□□ 2.24
CCDC9-201ENST00000221922 SLFN5Q08AF3 891 aa29.04■■■□□ 2.24
CCDC9-201ENST00000221922 CRBNQ96SW2 442 aa29.04■■■□□ 2.24
CCDC9-201ENST00000221922 MINK1Q8N4C8 1332 aaPredicted RBP29.04■■■□□ 2.24
CCDC9-201ENST00000221922 A0A1W2PP64 1363 aa29.04■■■□□ 2.24
CCDC9-201ENST00000221922 APAF1O14727 1248 aa29.03■■■□□ 2.24
CCDC9-201ENST00000221922 PDE4AP27815 886 aa29.03■■■□□ 2.24
CCDC9-201ENST00000221922 ZBTB47Q9UFB7 747 aaPredicted RBP29.03■■■□□ 2.24
CCDC9-201ENST00000221922 BACH2Q9BYV9 841 aa29.01■■■□□ 2.24
CCDC9-201ENST00000221922 UBR1Q8IWV7 1749 aa29.01■■■□□ 2.23
CCDC9-201ENST00000221922 TRMT2AQ8IZ69 625 aaKnown RBP29.01■■■□□ 2.23
CCDC9-201ENST00000221922 ANKRD26Q9UPS8 1709 aa29■■■□□ 2.23
CCDC9-201ENST00000221922 TRHP20396 242 aaPredicted RBP29■■■□□ 2.23
CCDC9-201ENST00000221922 CD163L1Q9NR16 1453 aa29■■■□□ 2.23
CCDC9-201ENST00000221922 KNDC1Q76NI1 1749 aa28.98■■■□□ 2.23
CCDC9-201ENST00000221922 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.98■■■□□ 2.23
CCDC9-201ENST00000221922 MED14O60244 1454 aa28.98■■■□□ 2.23
CCDC9-201ENST00000221922 TERF2IPQ9NYB0 399 aa28.98■■■□□ 2.23
CCDC9-201ENST00000221922 NKTRP30414 1462 aaKnown RBP28.97■■■□□ 2.23
CCDC9-201ENST00000221922 E9PSI1 815 aa28.97■■■□□ 2.23
CCDC9-201ENST00000221922 HDGFP51858 240 aaKnown RBP28.97■■■□□ 2.23
CCDC9-201ENST00000221922 CFAP53Q96M91 514 aa28.95■■■□□ 2.22
CCDC9-201ENST00000221922 CDK19Q9BWU1 502 aa28.95■■■□□ 2.22
CCDC9-201ENST00000221922 TNNT2P45379 298 aaPredicted RBP28.93■■■□□ 2.22
CCDC9-201ENST00000221922 MTHFSP49914 203 aa28.92■■■□□ 2.22
CCDC9-201ENST00000221922 C20orf194Q5TEA3 1177 aa28.92■■■□□ 2.22
CCDC9-201ENST00000221922 TMEM2Q9UHN6 1383 aa28.92■■■□□ 2.22
CCDC9-201ENST00000221922 TECPR2O15040 1411 aa28.92■■■□□ 2.22
CCDC9-201ENST00000221922 NLRP1Q9C000 1473 aa28.92■■■□□ 2.22
CCDC9-201ENST00000221922 METP08581 1390 aa28.9■■■□□ 2.22
CCDC9-201ENST00000221922 KDM2BQ8NHM5 1336 aa28.9■■■□□ 2.22
CCDC9-201ENST00000221922 ATP7BP35670 1465 aa28.9■■■□□ 2.22
CCDC9-201ENST00000221922 CPS1P31327 1500 aa28.89■■■□□ 2.22
CCDC9-201ENST00000221922 RUNDC1Q96C34 613 aa28.89■■■□□ 2.22
CCDC9-201ENST00000221922 FAM135BQ49AJ0 1406 aa28.89■■■□□ 2.22
CCDC9-201ENST00000221922 KIF20BQ96Q89 1820 aa28.89■■■□□ 2.22
CCDC9-201ENST00000221922 HDGFL2Q7Z4V5 671 aaPredicted RBP28.89■■■□□ 2.21
CCDC9-201ENST00000221922 DEKP35659 375 aaKnown RBP28.88■■■□□ 2.21
CCDC9-201ENST00000221922 NBR1Q14596 966 aa28.88■■■□□ 2.21
CCDC9-201ENST00000221922 SIRT1Q96EB6 747 aa28.88■■■□□ 2.21
CCDC9-201ENST00000221922 IQSEC2Q5JU85 1478 aa28.88■■■□□ 2.21
CCDC9-201ENST00000221922 WAPLQ7Z5K2 1190 aa28.87■■■□□ 2.21
CCDC9-201ENST00000221922 SPINK5Q9NQ38 1064 aaPredicted RBP28.85■■■□□ 2.21
CCDC9-201ENST00000221922 WWC1Q8IX03 1113 aa28.84■■■□□ 2.21
CCDC9-201ENST00000221922 FYB1O15117 783 aa28.84■■■□□ 2.21
CCDC9-201ENST00000221922 NPM2Q86SE8 214 aaKnown RBP28.84■■■□□ 2.21
CCDC9-201ENST00000221922 C3P01024 1663 aa28.84■■■□□ 2.21
CCDC9-201ENST00000221922 CABP1Q9NZU7 370 aa28.83■■■□□ 2.21
CCDC9-201ENST00000221922 NCBP3Q53F19 620 aaKnown RBP28.82■■■□□ 2.2
CCDC9-201ENST00000221922 CENPQQ7L2Z9 268 aaPredicted RBP28.82■■■□□ 2.2
CCDC9-201ENST00000221922 GGNBP2Q9H3C7 697 aa28.81■■■□□ 2.2
CCDC9-201ENST00000221922 FER1L4A9Z1Z3 1794 aa28.8■■■□□ 2.2
CCDC9-201ENST00000221922 COL3A1P02461 1466 aaPredicted RBP28.8■■■□□ 2.2
CCDC9-201ENST00000221922 ADAMTS13Q76LX8 1427 aa28.8■■■□□ 2.2
CCDC9-201ENST00000221922 PLEKHG1Q9ULL1 1385 aa28.8■■■□□ 2.2
CCDC9-201ENST00000221922 WASLO00401 505 aaPredicted RBP28.79■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms