RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W SFT1P43682 97 aa3.91□□□□□ -1.78
ATG4YNL223W GIS2P53849 153 aaKnown RBP RIP-Chip data3.91□□□□□ -1.78not detected
ATG4YNL223W DDR2P89113 61 aa3.91□□□□□ -1.78
ATG4YNL223W YFR009W-AP0C5M9 85 aa3.9□□□□□ -1.79
ATG4YNL223W BET1P22804 142 aa3.9□□□□□ -1.79
ATG4YNL223W SKI6P46948 246 aaPredicted RBP3.89□□□□□ -1.79
ATG4YNL223W TSC3Q3E790 80 aa3.89□□□□□ -1.79
ATG4YNL223W BSC4P53841 131 aa3.87□□□□□ -1.79
ATG4YNL223W LCL1Q02786 101 aa3.87□□□□□ -1.79
ATG4YNL223W YHR007C-AQ07074 71 aa3.87□□□□□ -1.79
ATG4YNL223W YAL063C-AQ3E791 96 aa3.87□□□□□ -1.79
ATG4YNL223W MDN1Q12019 4910 aaKnown RBP3.87□□□□□ -1.79
ATG4YNL223W ISD11Q6Q560 94 aa3.86□□□□□ -1.79
ATG4YNL223W RPL36BO14455 100 aaKnown RBP3.86□□□□□ -1.79
ATG4YNL223W YAR1P46683 200 aa3.86□□□□□ -1.79
ATG4YNL223W YOR072WQ08486 104 aa3.86□□□□□ -1.79
ATG4YNL223W KRE1P17260 313 aa3.85□□□□□ -1.79
ATG4YNL223W EDC1P53080 175 aaPredicted RBP3.85□□□□□ -1.79
ATG4YNL223W RSM19P53733 91 aaPredicted RBP3.85□□□□□ -1.79
ATG4YNL223W YGR121W-AQ3E816 71 aa3.85□□□□□ -1.79
ATG4YNL223W YFL065CP43539 102 aa3.84□□□□□ -1.8
ATG4YNL223W YPR203WQ08994 102 aa3.84□□□□□ -1.8
ATG4YNL223W YHR139C-AO13536 103 aa3.83□□□□□ -1.8
ATG4YNL223W RAD6P06104 172 aa3.83□□□□□ -1.8
ATG4YNL223W EDC2P40023 145 aaPredicted RBP3.83□□□□□ -1.8
ATG4YNL223W ICS3P47034 131 aa3.83□□□□□ -1.8
ATG4YNL223W MMS2P53152 137 aa3.83□□□□□ -1.8
ATG4YNL223W YFL041W-AQ3E817 63 aa3.83□□□□□ -1.8
ATG4YNL223W YLR415CO13578 112 aa3.82□□□□□ -1.8
ATG4YNL223W SHH4Q06236 168 aa3.82□□□□□ -1.8
ATG4YNL223W TDA8Q6B2U8 126 aa3.82□□□□□ -1.8
ATG4YNL223W YHR213W-BQ8TGK1 99 aa3.82□□□□□ -1.8
ATG4YNL223W RSM18P40033 138 aa3.81□□□□□ -1.8
ATG4YNL223W SPG1P50088 95 aa3.81□□□□□ -1.8
ATG4YNL223W RPL38P49167 78 aaKnown RBP3.8□□□□□ -1.8
ATG4YNL223W EMC6Q12431 108 aa3.8□□□□□ -1.8
ATG4YNL223W YMR230W-AQ3E7B5 62 aa3.8□□□□□ -1.8
ATG4YNL223W RPP2AP05319 106 aaKnown RBP3.79□□□□□ -1.8
ATG4YNL223W COX23P38824 151 aa3.79□□□□□ -1.8
ATG4YNL223W YJR085CP47131 105 aaKnown RBP3.79□□□□□ -1.8
ATG4YNL223W YJL133C-AQ3E7A3 74 aa3.79□□□□□ -1.8
ATG4YNL223W YBL112CQ3E7Y4 105 aa3.79□□□□□ -1.8
ATG4YNL223W TDA2P40045 126 aa3.79□□□□□ -1.8
ATG4YNL223W YNL184CP53876 108 aa3.79□□□□□ -1.8
ATG4YNL223W YOL014WQ08110 124 aa3.79□□□□□ -1.8
ATG4YNL223W ECM19Q06011 112 aa3.78□□□□□ -1.8
ATG4YNL223W YJL197C-AP0C5P0 93 aa3.77□□□□□ -1.81
ATG4YNL223W YBR027CP38220 110 aa3.77□□□□□ -1.81
ATG4YNL223W YHL042WP38729 150 aa3.77□□□□□ -1.81
ATG4YNL223W YEL045CP32616 141 aa3.76□□□□□ -1.81
ATG4YNL223W YLR162WQ06235 118 aa3.76□□□□□ -1.81
ATG4YNL223W YOR268CQ08734 132 aa3.76□□□□□ -1.81
ATG4YNL223W YLR285C-AQ3E771 56 aa3.76□□□□□ -1.81
ATG4YNL223W DDR48P18899 430 aaKnown RBP3.75□□□□□ -1.81
ATG4YNL223W YSY6P38374 65 aa3.75□□□□□ -1.81
ATG4YNL223W ATP20Q12233 115 aa3.75□□□□□ -1.81
ATG4YNL223W YIL002W-AQ3E7Z5 69 aa3.75□□□□□ -1.81
ATG4YNL223W MIC10Q96VH5 97 aa3.75□□□□□ -1.81
ATG4YNL223W YGL149WP53116 101 aa3.73□□□□□ -1.81
ATG4YNL223W COF1Q03048 143 aaKnown RBP3.73□□□□□ -1.81
ATG4YNL223W YDR119W-AQ2V2P9 66 aa3.72□□□□□ -1.81
ATG4YNL223W YCR050CP25630 102 aa3.71□□□□□ -1.82
ATG4YNL223W YHL018WP38744 120 aaPredicted RBP3.69□□□□□ -1.82
ATG4YNL223W YGR039WP53225 103 aa3.69□□□□□ -1.82
ATG4YNL223W YBR182C-AQ8TGU6 64 aa3.69□□□□□ -1.82
ATG4YNL223W YKL183C-AQ3E765 70 aa3.68□□□□□ -1.82
ATG4YNL223W YOL097W-AQ3E7Y9 61 aa3.68□□□□□ -1.82
ATG4YNL223W YLR157W-DP0CE99 70 aa3.67□□□□□ -1.82
ATG4YNL223W YPL038W-AQ3E7B4 63 aa3.67□□□□□ -1.82
ATG4YNL223W YFL067WP43537 175 aa3.67□□□□□ -1.82
ATG4YNL223W YOR304C-AO14468 76 aa3.66□□□□□ -1.82
ATG4YNL223W YCR043CP25361 127 aa3.66□□□□□ -1.82
ATG4YNL223W HOT13P36078 116 aa3.65□□□□□ -1.83
ATG4YNL223W YDR010CQ12426 110 aa3.64□□□□□ -1.83
ATG4YNL223W KSH1Q8TGJ3 72 aa3.64□□□□□ -1.83
ATG4YNL223W YAR064WP39563 99 aa3.63□□□□□ -1.83
ATG4YNL223W RPL36AP05745 100 aaPredicted RBP3.62□□□□□ -1.83
ATG4YNL223W YOR314WQ12506 109 aa3.62□□□□□ -1.83
ATG4YNL223W YDR246W-AQ3E763 66 aa3.62□□□□□ -1.83
ATG4YNL223W KTI11Q3E840 82 aa3.62□□□□□ -1.83
ATG4YNL223W YPL080CQ02826 108 aa3.61□□□□□ -1.83
ATG4YNL223W NOP10Q6Q547 58 aaPredicted RBP3.61□□□□□ -1.83
ATG4YNL223W YHL005CP38752 130 aa3.6□□□□□ -1.83
ATG4YNL223W YDL012CQ12489 107 aa3.6□□□□□ -1.83
ATG4YNL223W TOM6P33448 61 aa3.57□□□□□ -1.84
ATG4YNL223W YER187WP40102 141 aa3.57□□□□□ -1.84
ATG4YNL223W YOL013W-AP0C272 63 aaPredicted RBP3.56□□□□□ -1.84
ATG4YNL223W YHR073W-AP0C5N7 58 aa3.55□□□□□ -1.84
ATG4YNL223W AIM4P38305 123 aaPredicted RBP3.55□□□□□ -1.84
ATG4YNL223W YIL102CP40488 101 aa3.55□□□□□ -1.84
ATG4YNL223W LIP1Q03579 150 aa3.55□□□□□ -1.84
ATG4YNL223W YPR153WQ06537 140 aa3.55□□□□□ -1.84
ATG4YNL223W YOL166W-AQ8TGJ1 51 aa3.55□□□□□ -1.84
ATG4YNL223W YLR361C-AQ3E795 98 aa3.53□□□□□ -1.84
ATG4YNL223W YDR182W-AQ3E796 67 aa3.53□□□□□ -1.84
ATG4YNL223W COX7P10174 60 aa3.51□□□□□ -1.85
ATG4YNL223W YOR316C-AQ3E806 69 aa3.47□□□□□ -1.85
ATG4YNL223W YJR128WP47162 119 aa3.47□□□□□ -1.85
ATG4YNL223W YGR164WP53291 111 aa3.47□□□□□ -1.85
ATG4YNL223W YNL122CP53921 115 aaPredicted RBP3.47□□□□□ -1.85
Retrieved 100 of 5,963 RNA–protein pairs in 8.4 ms