RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W YDR115WQ04598 105 aa3.05□□□□□ -1.92
SSH4YKL124W YDL241WQ07738 123 aa3.05□□□□□ -1.92
SSH4YKL124W YMR295CQ03559 197 aa3.05□□□□□ -1.92
SSH4YKL124W ECM19Q06011 112 aa3.05□□□□□ -1.92
SSH4YKL124W LCL2Q08045 131 aa3.05□□□□□ -1.92
SSH4YKL124W PAU19P0CE85 124 aa3.04□□□□□ -1.92
SSH4YKL124W PAU3P25610 124 aa3.04□□□□□ -1.92
SSH4YKL124W PAU15P40585 124 aa3.04□□□□□ -1.92
SSH4YKL124W DCV1P43595 202 aa3.04□□□□□ -1.92
SSH4YKL124W YPL261CQ08976 102 aa3.04□□□□□ -1.92
SSH4YKL124W YER078W-AQ3E7A2 54 aa3.04□□□□□ -1.92
SSH4YKL124W YHR125WP38831 101 aa3.03□□□□□ -1.92
SSH4YKL124W RSM18P40033 138 aa3.03□□□□□ -1.92
SSH4YKL124W ICS3P47034 131 aa3.03□□□□□ -1.92
SSH4YKL124W YGL118CP53132 145 aa3.03□□□□□ -1.92
SSH4YKL124W YKR032WP36127 104 aa3.02□□□□□ -1.93
SSH4YKL124W YDR381C-AQ3E6R5 114 aa3.02□□□□□ -1.93
SSH4YKL124W RPS22BQ3E7Y3 130 aaKnown RBP3.02□□□□□ -1.93
SSH4YKL124W YDR034C-AP0C289 58 aa3.01□□□□□ -1.93
SSH4YKL124W MGR2Q02889 113 aa3.01□□□□□ -1.93
SSH4YKL124W YDL157CQ12082 118 aa3.01□□□□□ -1.93
SSH4YKL124W YFL041W-AQ3E817 63 aa3.01□□□□□ -1.93
SSH4YKL124W PFY1P07274 126 aa3□□□□□ -1.93
SSH4YKL124W YCR043CP25361 127 aa2.99□□□□□ -1.93
SSH4YKL124W PAU16P35994 123 aa2.99□□□□□ -1.93
SSH4YKL124W HOT13P36078 116 aa2.99□□□□□ -1.93
SSH4YKL124W YJR146WP47174 117 aa2.99□□□□□ -1.93
SSH4YKL124W TOS6P48560 102 aa2.99□□□□□ -1.93
SSH4YKL124W YIL102C-AQ2V2P5 75 aa2.99□□□□□ -1.93
SSH4YKL124W RPC10P40422 70 aa2.99□□□□□ -1.93
SSH4YKL124W YLR194CQ05777 254 aa2.99□□□□□ -1.93
SSH4YKL124W YPL038W-AQ3E7B4 63 aa2.99□□□□□ -1.93
SSH4YKL124W OST5Q92316 86 aa2.99□□□□□ -1.93
SSH4YKL124W RPL26AP05743 127 aaKnown RBP2.98□□□□□ -1.93
SSH4YKL124W YHR032W-AP0C5N6 59 aa2.98□□□□□ -1.93
SSH4YKL124W NHP2P32495 156 aaPredicted RBP2.98□□□□□ -1.93
SSH4YKL124W YEL067CP39978 195 aa2.98□□□□□ -1.93
SSH4YKL124W YGL149WP53116 101 aa2.98□□□□□ -1.93
SSH4YKL124W RGM1Q00453 211 aa2.98□□□□□ -1.93
SSH4YKL124W YIL014C-AQ02598 104 aa2.98□□□□□ -1.93
SSH4YKL124W YBR209WP38311 105 aa2.97□□□□□ -1.93
SSH4YKL124W YHL005CP38752 130 aa2.97□□□□□ -1.93
SSH4YKL124W YOR008C-AQ3E7B9 74 aa2.97□□□□□ -1.93
SSH4YKL124W YEL008WP40001 126 aa2.96□□□□□ -1.93
SSH4YKL124W YAL067W-AQ8TGK6 75 aa2.96□□□□□ -1.93
SSH4YKL124W YFL067WP43537 175 aa2.96□□□□□ -1.94
SSH4YKL124W LCL1Q02786 101 aa2.96□□□□□ -1.94
SSH4YKL124W YNR077CP53758 84 aa2.95□□□□□ -1.94
SSH4YKL124W LSM6Q06406 86 aaKnown RBP2.95□□□□□ -1.94
SSH4YKL124W YBR219CP38317 127 aa2.94□□□□□ -1.94
SSH4YKL124W YLR307C-AQ3E825 87 aa2.94□□□□□ -1.94
SSH4YKL124W COX23P38824 151 aa2.93□□□□□ -1.94
SSH4YKL124W IGD1P43598 195 aa2.93□□□□□ -1.94
SSH4YKL124W SNA2P56508 79 aa2.93□□□□□ -1.94
SSH4YKL124W YML079WQ03629 201 aa2.93□□□□□ -1.94
SSH4YKL124W YPR153WQ06537 140 aa2.93□□□□□ -1.94
SSH4YKL124W COA3Q3E7B2 85 aa2.93□□□□□ -1.94
SSH4YKL124W HMRA2P0CY13 119 aa2.92□□□□□ -1.94
SSH4YKL124W YAL065CO13511 128 aa2.91□□□□□ -1.94
SSH4YKL124W YJL197C-AP0C5P0 93 aa2.91□□□□□ -1.94
SSH4YKL124W SEC11P15367 167 aa2.9□□□□□ -1.94
SSH4YKL124W HPA2Q06592 156 aa2.9□□□□□ -1.94
SSH4YKL124W YGL041C-BQ3E750 60 aa2.9□□□□□ -1.94
SSH4YKL124W CMC4Q3E7A9 73 aa2.9□□□□□ -1.94
SSH4YKL124W PPT2Q12036 173 aa2.89□□□□□ -1.95
SSH4YKL124W YLR236CA0A023PZG4 107 aa2.88□□□□□ -1.95
SSH4YKL124W QCR8P08525 94 aa2.88□□□□□ -1.95
SSH4YKL124W AIM19P40502 157 aa2.88□□□□□ -1.95
SSH4YKL124W AQY2P0CD90 149 aa2.88□□□□□ -1.95
SSH4YKL124W SHU1P38751 150 aa2.88□□□□□ -1.95
SSH4YKL124W RPL36BO14455 100 aaKnown RBP2.87□□□□□ -1.95
SSH4YKL124W RPL36AP05745 100 aaPredicted RBP2.87□□□□□ -1.95
SSH4YKL124W YOR314WQ12506 109 aa2.87□□□□□ -1.95
SSH4YKL124W YGR121W-AQ3E816 71 aa2.87□□□□□ -1.95
SSH4YKL124W YER188C-AP0C0V2 99 aa2.85□□□□□ -1.95
SSH4YKL124W YCR095W-AQ3E787 52 aa2.85□□□□□ -1.95
SSH4YKL124W COX8P04039 78 aa2.84□□□□□ -1.96
SSH4YKL124W YBL039W-BP0C268 59 aa2.84□□□□□ -1.96
SSH4YKL124W MVB12P42939 101 aa2.84□□□□□ -1.96
SSH4YKL124W YEL014CP39999 101 aa2.83□□□□□ -1.96
SSH4YKL124W Q0032Q9ZZX7 96 aa2.83□□□□□ -1.96
SSH4YKL124W YBR027CP38220 110 aa2.82□□□□□ -1.96
SSH4YKL124W YSY6P38374 65 aa2.82□□□□□ -1.96
SSH4YKL124W YMR122CQ03879 124 aa2.82□□□□□ -1.96
SSH4YKL124W YLR162WQ06235 118 aa2.82□□□□□ -1.96
SSH4YKL124W YKL023C-AQ2V2P3 75 aa2.82□□□□□ -1.96
SSH4YKL124W YDR246W-AQ3E763 66 aa2.82□□□□□ -1.96
SSH4YKL124W YLR285C-AQ3E771 56 aa2.82□□□□□ -1.96
SSH4YKL124W RPL29P05747 59 aaPredicted RBP2.82□□□□□ -1.96
SSH4YKL124W IRC21Q04772 201 aa2.81□□□□□ -1.96
SSH4YKL124W YDL022C-AP0C5L6 82 aa2.8□□□□□ -1.96
SSH4YKL124W AIM4P38305 123 aaPredicted RBP2.8□□□□□ -1.96
SSH4YKL124W MRPS12P53732 153 aa2.8□□□□□ -1.96
SSH4YKL124W YDR010CQ12426 110 aa2.8□□□□□ -1.96
SSH4YKL124W YKL065W-AQ2V2P2 73 aa2.8□□□□□ -1.96
SSH4YKL124W YLL006W-AQ3E814 58 aa2.8□□□□□ -1.96
SSH4YKL124W YIL156W-BQ2V2P4 73 aa2.79□□□□□ -1.96
SSH4YKL124W MRX7P53869 86 aa2.79□□□□□ -1.96
SSH4YKL124W RPL26BP53221 127 aaKnown RBP2.77□□□□□ -1.97
SSH4YKL124W YNL190WP53872 204 aa2.77□□□□□ -1.97
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms