RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeastyeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSM4YIL030C TOS8P53147 276 aa2.39□□□□□ -2.03
SSM4YIL030C NOP10Q6Q547 58 aaPredicted RBP2.39□□□□□ -2.03
SSM4YIL030C YIL059CP40520 121 aa2.39□□□□□ -2.03
SSM4YIL030C MVB12P42939 101 aa2.39□□□□□ -2.03
SSM4YIL030C FYV5P25585 152 aa2.38□□□□□ -2.03
SSM4YIL030C AUA1P32450 94 aa2.38□□□□□ -2.03
SSM4YIL030C COF1Q03048 143 aaKnown RBP2.38□□□□□ -2.03
SSM4YIL030C YBL112CQ3E7Y4 105 aa2.38□□□□□ -2.03
SSM4YIL030C YGL193CP53097 103 aa2.38□□□□□ -2.03
SSM4YIL030C PBA1Q05778 276 aa2.37□□□□□ -2.03
SSM4YIL030C YBL039W-BP0C268 59 aa2.37□□□□□ -2.03
SSM4YIL030C GIS2P53849 153 aaKnown RBP RIP-Chip data2.37□□□□□ -2.03 RIP-Chip
SSM4YIL030C YNL042W-BQ3E7Z2 85 aa2.37□□□□□ -2.03
SSM4YIL030C YCR001WP25347 104 aa2.37□□□□□ -2.03
SSM4YIL030C ICS3P47034 131 aa2.37□□□□□ -2.03
SSM4YIL030C YOR034C-AQ3E735 80 aa2.37□□□□□ -2.03
SSM4YIL030C YOR011W-AQ3E807 68 aa2.37□□□□□ -2.03
SSM4YIL030C YHR212W-AP0CX91 67 aa2.36□□□□□ -2.03
SSM4YIL030C AIM4P38305 123 aaPredicted RBP2.36□□□□□ -2.03
SSM4YIL030C TMC1Q08422 150 aaPredicted RBP2.36□□□□□ -2.03
SSM4YIL030C YDR029WQ12111 104 aa2.36□□□□□ -2.03
SSM4YIL030C MDN1Q12019 4910 aaKnown RBP2.36□□□□□ -2.03
SSM4YIL030C RSM18P40033 138 aa2.35□□□□□ -2.03
SSM4YIL030C YOL013W-AP0C272 63 aaPredicted RBP2.34□□□□□ -2.03
SSM4YIL030C YNL277W-AQ3E7Z0 62 aa2.34□□□□□ -2.03
SSM4YIL030C RPB9P27999 122 aa2.34□□□□□ -2.03
SSM4YIL030C YBR144CP34215 104 aa2.34□□□□□ -2.03
SSM4YIL030C SPT4P32914 102 aaPredicted RBP2.34□□□□□ -2.04
SSM4YIL030C YLR285C-AQ3E771 56 aa2.34□□□□□ -2.04
SSM4YIL030C YGL260WP53056 76 aa2.33□□□□□ -2.04
SSM4YIL030C DDR2P89113 61 aa2.33□□□□□ -2.04
SSM4YIL030C MIC10Q96VH5 97 aa2.33□□□□□ -2.04
SSM4YIL030C YLR255CO13574 117 aa2.32□□□□□ -2.04
SSM4YIL030C BPH1P25356 2167 aa2.31□□□□□ -2.04
SSM4YIL030C YHR213W-BQ8TGK1 99 aa2.31□□□□□ -2.04
SSM4YIL030C DIF1O13577 133 aa2.31□□□□□ -2.04
SSM4YIL030C YDL012CQ12489 107 aa2.31□□□□□ -2.04
SSM4YIL030C YHR073W-AP0C5N7 58 aa2.3□□□□□ -2.04
SSM4YIL030C BSC4P53841 131 aa2.3□□□□□ -2.04
SSM4YIL030C YER188C-AP0C0V2 99 aa2.3□□□□□ -2.04
SSM4YIL030C AQY2P0CD90 149 aa2.29□□□□□ -2.04
SSM4YIL030C YHR125WP38831 101 aa2.29□□□□□ -2.04
SSM4YIL030C YJL127C-BQ3E828 52 aa2.29□□□□□ -2.04
SSM4YIL030C GCN1P33892 2672 aaKnown RBP2.29□□□□□ -2.04
SSM4YIL030C LIP1Q03579 150 aa2.29□□□□□ -2.04
SSM4YIL030C RPL26AP05743 127 aaKnown RBP2.28□□□□□ -2.04
SSM4YIL030C SPC1P46965 94 aa2.28□□□□□ -2.04
SSM4YIL030C RPL26BP53221 127 aaKnown RBP2.28□□□□□ -2.04
SSM4YIL030C YLR281CQ05863 155 aa2.28□□□□□ -2.04
SSM4YIL030C NUM1Q00402 2748 aa2.28□□□□□ -2.04
SSM4YIL030C RPL11AP0C0W9 174 aaKnown RBP2.28□□□□□ -2.04
SSM4YIL030C YAL064WP39711 94 aa2.28□□□□□ -2.04
SSM4YIL030C RPL11BQ3E757 174 aaPredicted RBP2.28□□□□□ -2.04
SSM4YIL030C YGL088WP53151 121 aa2.27□□□□□ -2.05
SSM4YIL030C RPL43AP0CX25 92 aaKnown RBP2.27□□□□□ -2.05
SSM4YIL030C RPL43BP0CX26 92 aa2.27□□□□□ -2.05
SSM4YIL030C YJL133C-AQ3E7A3 74 aa2.27□□□□□ -2.05
SSM4YIL030C YJR085CP47131 105 aaKnown RBP2.27□□□□□ -2.05
SSM4YIL030C SMD1Q02260 146 aaPredicted RBP2.27□□□□□ -2.05
SSM4YIL030C SGF11Q03067 99 aa2.27□□□□□ -2.05
SSM4YIL030C YGL149WP53116 101 aa2.26□□□□□ -2.05
SSM4YIL030C FMP27Q06179 2628 aa2.26□□□□□ -2.05
SSM4YIL030C YCR041WP37265 110 aa2.26□□□□□ -2.05
SSM4YIL030C RTC6O14464 93 aa2.26□□□□□ -2.05
SSM4YIL030C YBR182C-AQ8TGU6 64 aa2.26□□□□□ -2.05
SSM4YIL030C BET1P22804 142 aa2.25□□□□□ -2.05
SSM4YIL030C RPS30AP0CX33 63 aaKnown RBP2.25□□□□□ -2.05
SSM4YIL030C RPS30BP0CX34 63 aaKnown RBP2.25□□□□□ -2.05
SSM4YIL030C YBR209WP38311 105 aa2.25□□□□□ -2.05
SSM4YIL030C YMR122CQ03879 124 aa2.25□□□□□ -2.05
SSM4YIL030C SPG1P50088 95 aa2.24□□□□□ -2.05
SSM4YIL030C YOL097W-AQ3E7Y9 61 aa2.24□□□□□ -2.05
SSM4YIL030C YPR153WQ06537 140 aa2.24□□□□□ -2.05
SSM4YIL030C TSC3Q3E790 80 aa2.23□□□□□ -2.05
SSM4YIL030C TDA2P40045 126 aa2.23□□□□□ -2.05
SSM4YIL030C YBL008W-AQ3E821 79 aa2.23□□□□□ -2.05
SSM4YIL030C YOR072WQ08486 104 aa2.22□□□□□ -2.05
SSM4YIL030C RRT15Q3E811 62 aa2.21□□□□□ -2.06
SSM4YIL030C YAR064WP39563 99 aa2.2□□□□□ -2.06
SSM4YIL030C YOR268CQ08734 132 aa2.2□□□□□ -2.06
SSM4YIL030C HUB1Q6Q546 73 aa2.19□□□□□ -2.06
SSM4YIL030C YGL041C-BQ3E750 60 aa2.19□□□□□ -2.06
SSM4YIL030C YCR043CP25361 127 aa2.18□□□□□ -2.06
SSM4YIL030C YBR027CP38220 110 aa2.18□□□□□ -2.06
SSM4YIL030C URA2P07259 2214 aaKnown RBP2.18□□□□□ -2.06
SSM4YIL030C YPR117WQ06116 2489 aa2.18□□□□□ -2.06
SSM4YIL030C ATP17Q06405 101 aa2.17□□□□□ -2.06
SSM4YIL030C YML100W-AQ8TGT0 57 aa2.17□□□□□ -2.06
SSM4YIL030C TAO3P40468 2376 aa2.17□□□□□ -2.06
SSM4YIL030C RPL37BP51402 88 aaKnown RBP2.17□□□□□ -2.06
SSM4YIL030C YOR381W-AQ3E804 55 aa2.17□□□□□ -2.06
SSM4YIL030C YBR016WP38216 128 aa2.17□□□□□ -2.06
SSM4YIL030C TIM10P87108 93 aa2.16□□□□□ -2.06
SSM4YIL030C YMR001C-AQ8TGS9 76 aa2.16□□□□□ -2.06
SSM4YIL030C YAR023CD6VPM8 179 aa2.16□□□□□ -2.06
SSM4YIL030C YGR146C-AQ8TGT9 53 aa2.15□□□□□ -2.06
SSM4YIL030C OST5Q92316 86 aa2.14□□□□□ -2.07
SSM4YIL030C SDH6Q3E785 79 aa2.14□□□□□ -2.07
SSM4YIL030C YHR007C-AQ07074 71 aa2.13□□□□□ -2.07
SSM4YIL030C LCL2Q08045 131 aa2.12□□□□□ -2.07
Retrieved 100 of 5,963 RNA–protein pairs in 12.2 ms