RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	INO4	P13902	151 aa		2.52	□□□□□ -2.01
UBX5	YDR330W	AIM19	P40502	157 aa		2.52	□□□□□ -2.01
UBX5	YDR330W	MVB12	P42939	101 aa		2.52	□□□□□ -2.01
UBX5	YDR330W	KNH1	P50112	268 aa		2.52	□□□□□ -2.01
UBX5	YDR330W	IRC21	Q04772	201 aa		2.52	□□□□□ -2.01
UBX5	YDR330W	TSC3	Q3E790	80 aa		2.52	□□□□□ -2.01
UBX5	YDR330W	YFR032C-B	Q8TGU2	87 aa		2.52	□□□□□ -2.01
UBX5	YDR330W	YLR236C	A0A023PZG4	107 aa		2.52	□□□□□ -2.01
UBX5	YDR330W	RTC6	O14464	93 aa		2.52	□□□□□ -2.01
UBX5	YDR330W	ICY1	Q04329	127 aa		2.52	□□□□□ -2.01
UBX5	YDR330W	RRT15	Q3E811	62 aa		2.52	□□□□□ -2.01
UBX5	YDR330W	AQY2	P0CD90	149 aa		2.51	□□□□□ -2.01
UBX5	YDR330W	YCR085W	P25650	117 aa		2.51	□□□□□ -2.01
UBX5	YDR330W	YBL039W-B	P0C268	59 aa		2.5	□□□□□ -2.01
UBX5	YDR330W	PBI2	P0CT04	75 aa	Known RBP	2.5	□□□□□ -2.01
UBX5	YDR330W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	2.5	□□□□□ -2.01	not detected
UBX5	YDR330W	YFL019C	P43576	117 aa		2.5	□□□□□ -2.01
UBX5	YDR330W	YDR381C-A	Q3E6R5	114 aa		2.5	□□□□□ -2.01
UBX5	YDR330W	UBC4	P15731	148 aa		2.49	□□□□□ -2.01
UBX5	YDR330W	YFL065C	P43539	102 aa		2.49	□□□□□ -2.01
UBX5	YDR330W	MPC3	P53311	146 aa		2.49	□□□□□ -2.01
UBX5	YDR330W	YPR203W	Q08994	102 aa		2.49	□□□□□ -2.01
UBX5	YDR330W	YAR023C	D6VPM8	179 aa		2.48	□□□□□ -2.01
UBX5	YDR330W	YJR107C-A	P0CT86	78 aa		2.48	□□□□□ -2.01
UBX5	YDR330W	SKI6	P46948	246 aa	Predicted RBP	2.48	□□□□□ -2.01
UBX5	YDR330W	SNA2	P56508	79 aa		2.47	□□□□□ -2.01
UBX5	YDR330W	EMC6	Q12431	108 aa		2.47	□□□□□ -2.01
UBX5	YDR330W	YFL041W-A	Q3E817	63 aa		2.47	□□□□□ -2.01
UBX5	YDR330W	YLR307C-A	Q3E825	87 aa		2.47	□□□□□ -2.01
UBX5	YDR330W	FYV5	P25585	152 aa		2.46	□□□□□ -2.02
UBX5	YDR330W	GAT4	P40569	121 aa		2.46	□□□□□ -2.02
UBX5	YDR330W	SHH4	Q06236	168 aa		2.46	□□□□□ -2.02
UBX5	YDR330W	YBR230W-A	Q3E762	66 aa		2.46	□□□□□ -2.02
UBX5	YDR330W	ATP18	P81450	59 aa		2.45	□□□□□ -2.02
UBX5	YDR330W	YGL041C-B	Q3E750	60 aa		2.45	□□□□□ -2.02
UBX5	YDR330W	Q0032	Q9ZZX7	96 aa		2.45	□□□□□ -2.02
UBX5	YDR330W	RAD6	P06104	172 aa		2.44	□□□□□ -2.02
UBX5	YDR330W	YFR009W-A	P0C5M9	85 aa		2.44	□□□□□ -2.02
UBX5	YDR330W	YJL127C-B	Q3E828	52 aa		2.44	□□□□□ -2.02
UBX5	YDR330W	UTP20	P35194	2493 aa	Known RBP	2.44	□□□□□ -2.02
UBX5	YDR330W	SFT1	P43682	97 aa		2.43	□□□□□ -2.02
UBX5	YDR330W	YDR029W	Q12111	104 aa		2.43	□□□□□ -2.02
UBX5	YDR330W	YNL042W-B	Q3E7Z2	85 aa		2.43	□□□□□ -2.02
UBX5	YDR330W	ECM12	O13529	151 aa		2.42	□□□□□ -2.02
UBX5	YDR330W	YGL193C	P53097	103 aa		2.42	□□□□□ -2.02
UBX5	YDR330W	RSM19	P53733	91 aa	Predicted RBP	2.42	□□□□□ -2.02
UBX5	YDR330W	YHL042W	P38729	150 aa		2.42	□□□□□ -2.02
UBX5	YDR330W	EDC1	P53080	175 aa	Predicted RBP	2.42	□□□□□ -2.02
UBX5	YDR330W	YDR034C-A	P0C289	58 aa		2.41	□□□□□ -2.02
UBX5	YDR330W	YOL014W	Q08110	124 aa		2.41	□□□□□ -2.02
UBX5	YDR330W	YML100W-A	Q8TGT0	57 aa		2.41	□□□□□ -2.02
UBX5	YDR330W	ICS3	P47034	131 aa		2.4	□□□□□ -2.03
UBX5	YDR330W	DDR2	P89113	61 aa		2.4	□□□□□ -2.03
UBX5	YDR330W	YDR119W-A	Q2V2P9	66 aa		2.4	□□□□□ -2.03
UBX5	YDR330W	YLR285C-A	Q3E771	56 aa		2.4	□□□□□ -2.03
UBX5	YDR330W	YER039C-A	P0CD97	72 aa		2.39	□□□□□ -2.03
UBX5	YDR330W	YSY6	P38374	65 aa		2.39	□□□□□ -2.03
UBX5	YDR330W	RPL38	P49167	78 aa	Known RBP	2.39	□□□□□ -2.03
UBX5	YDR330W	YGR039W	P53225	103 aa		2.39	□□□□□ -2.03
UBX5	YDR330W	BSC4	P53841	131 aa		2.39	□□□□□ -2.03
UBX5	YDR330W	COF1	Q03048	143 aa	Known RBP	2.39	□□□□□ -2.03
UBX5	YDR330W	YHR007C-A	Q07074	71 aa		2.39	□□□□□ -2.03
UBX5	YDR330W	RPL36B	O14455	100 aa	Known RBP	2.38	□□□□□ -2.03
UBX5	YDR330W	RSM18	P40033	138 aa		2.38	□□□□□ -2.03
UBX5	YDR330W	TDA2	P40045	126 aa		2.38	□□□□□ -2.03
UBX5	YDR330W	YHR213W-B	Q8TGK1	99 aa		2.38	□□□□□ -2.03
UBX5	YDR330W	YHL018W	P38744	120 aa	Predicted RBP	2.37	□□□□□ -2.03
UBX5	YDR330W	COX23	P38824	151 aa		2.37	□□□□□ -2.03
UBX5	YDR330W	YOR072W	Q08486	104 aa		2.37	□□□□□ -2.03
UBX5	YDR330W	YLR412C-A	Q3E742	68 aa		2.37	□□□□□ -2.03
UBX5	YDR330W	YPL038W-A	Q3E7B4	63 aa		2.37	□□□□□ -2.03
UBX5	YDR330W	RPS28B	P0C0X0	67 aa	Known RBP	2.37	□□□□□ -2.03
UBX5	YDR330W	ATP20	Q12233	115 aa		2.37	□□□□□ -2.03
UBX5	YDR330W	YJL133C-A	Q3E7A3	74 aa		2.37	□□□□□ -2.03
UBX5	YDR330W	RPS28A	Q3E7X9	67 aa	Predicted RBP	2.37	□□□□□ -2.03
UBX5	YDR330W	LCL2	Q08045	131 aa		2.35	□□□□□ -2.03
UBX5	YDR330W	YGR121W-A	Q3E816	71 aa		2.35	□□□□□ -2.03
UBX5	YDR330W	YCR050C	P25630	102 aa		2.34	□□□□□ -2.03
UBX5	YDR330W	YLR162W	Q06235	118 aa		2.34	□□□□□ -2.03
UBX5	YDR330W	YOR304C-A	O14468	76 aa		2.33	□□□□□ -2.04
UBX5	YDR330W	YJL197C-A	P0C5P0	93 aa		2.33	□□□□□ -2.04
UBX5	YDR330W	TOM6	P33448	61 aa		2.33	□□□□□ -2.04
UBX5	YDR330W	MIC10	Q96VH5	97 aa		2.33	□□□□□ -2.04
UBX5	YDR330W	SPG1	P50088	95 aa		2.32	□□□□□ -2.04
UBX5	YDR330W	LCL1	Q02786	101 aa		2.32	□□□□□ -2.04
UBX5	YDR330W	YDR246W-A	Q3E763	66 aa		2.32	□□□□□ -2.04
UBX5	YDR330W	YER187W	P40102	141 aa		2.32	□□□□□ -2.04
UBX5	YDR330W	YOR314W	Q12506	109 aa		2.32	□□□□□ -2.04
UBX5	YDR330W	YBR027C	P38220	110 aa		2.31	□□□□□ -2.04
UBX5	YDR330W	NOP10	Q6Q547	58 aa	Predicted RBP	2.31	□□□□□ -2.04
UBX5	YDR330W	AIM4	P38305	123 aa	Predicted RBP	2.29	□□□□□ -2.04
UBX5	YDR330W	SBH1	P52870	82 aa		2.29	□□□□□ -2.04
UBX5	YDR330W	YAR064W	P39563	99 aa		2.27	□□□□□ -2.05
UBX5	YDR330W	YIR021W-A	Q3E739	70 aa		2.27	□□□□□ -2.05
UBX5	YDR330W	YHR086W-A	Q3E746	53 aa		2.27	□□□□□ -2.05
UBX5	YDR330W	YDR182W-A	Q3E796	67 aa		2.27	□□□□□ -2.05
UBX5	YDR330W	YOL097W-A	Q3E7Y9	61 aa		2.27	□□□□□ -2.05
UBX5	YDR330W	YOL166W-A	Q8TGJ1	51 aa		2.27	□□□□□ -2.05
UBX5	YDR330W	YLR157W-D	P0CE99	70 aa		2.27	□□□□□ -2.05
UBX5	YDR330W	RPL36A	P05745	100 aa	Predicted RBP	2.26	□□□□□ -2.05

Retrieved 100 of 5,963 RNA–protein pairs in 298.3 ms