RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 PDILTQ8N807 584 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 ZNF513Q8N8E2 541 aaPredicted RBP15.98■□□□□ 0.15
SYNE2-228ENST00000639659 RDH13Q8NBN7 331 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 OR2I1PQ8NGU4 316 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 HPS3Q969F9 1004 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 FBXO32Q969P5 355 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 TTLL2Q9BWV7 592 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 SH3BP1Q9Y3L3 701 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 SPEGQ15772 3267 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 GON4LQ3T8J9 2241 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 BAHCC1Q9P281 2608 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 PI4KAP42356 2102 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 ADAM23O75077 832 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 OAS1P00973 400 aaKnown RBP15.97■□□□□ 0.15
SYNE2-228ENST00000639659 TNNI1P19237 187 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 PPP3CCP48454 512 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 NOP14P78316 857 aaKnown RBP15.97■□□□□ 0.15
SYNE2-228ENST00000639659 GAD2Q05329 585 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 GFPT1Q06210 699 aaPredicted RBP15.97■□□□□ 0.15
SYNE2-228ENST00000639659 SURF1Q15526 300 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 MAP7D1Q3KQU3 841 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 C10orf76Q5T2E6 689 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 FAM173BQ6P4H8 233 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 CCDC73Q6ZRK6 1079 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 STXBP4Q6ZWJ1 553 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 CCDC65Q8IXS2 484 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 GLIS3Q8NEA6 775 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 C8orf48Q96LL4 319 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 MED10Q9BTT4 135 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 NACA2Q9H009 215 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 HSPBP1Q9NZL4 362 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 LHX6Q9UPM6 363 aa15.97■□□□□ 0.15
SYNE2-228ENST00000639659 CEP192Q8TEP8 1941 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 A8MXQ7 604 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 AP5Z1O43299 807 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 OLFM2O95897 454 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 HOXB2P14652 356 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 PTPN1P18031 435 aaKnown RBP15.96■□□□□ 0.15
SYNE2-228ENST00000639659 EIF2DP41214 584 aaKnown RBP15.96■□□□□ 0.15
SYNE2-228ENST00000639659 KIR2DL1P43626 348 aaPredicted RBP15.96■□□□□ 0.15
SYNE2-228ENST00000639659 CYP2J2P51589 502 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 HSF5Q4G112 596 aaPredicted RBP15.96■□□□□ 0.15
SYNE2-228ENST00000639659 TRAPPC11Q7Z392 1133 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 WDR49Q8IV35 697 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 CCDC127Q96BQ5 260 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 ELOVL4Q9GZR5 314 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 TMEM30AQ9NV96 361 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 CALCOCO1Q9P1Z2 691 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 TBC1D14Q9P2M4 693 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 NXF1Q9UBU9 619 aaKnown RBP15.96■□□□□ 0.15
SYNE2-228ENST00000639659 PILRBQ9UKJ0 227 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 NEUROG3Q9Y4Z2 214 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 NME7Q9Y5B8 376 aa15.96■□□□□ 0.15
SYNE2-228ENST00000639659 SRPRBQ9Y5M8 271 aaKnown RBP15.96■□□□□ 0.15
SYNE2-228ENST00000639659 ATRXP46100 2492 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 ZFYVE26Q68DK2 2539 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 A0A087X0B3 334 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 KIAA0391O15091 583 aaKnown RBP15.95■□□□□ 0.14
SYNE2-228ENST00000639659 ZBTB24O43167 697 aaPredicted RBP15.95■□□□□ 0.14
SYNE2-228ENST00000639659 COCHO43405 550 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 OPHN1O60890 802 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 YWHAQP27348 245 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 RDXP35241 583 aaKnown RBP15.95■□□□□ 0.14
SYNE2-228ENST00000639659 DPP6P42658 865 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 TNFRSF4P43489 277 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 RING1Q06587 406 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 TRPC3Q13507 836 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 DUOXA1Q1HG43 343 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 WDR72Q3MJ13 1102 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 SLC23A3Q6PIS1 610 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 BBS7Q8IWZ6 715 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 CHCHD4Q8N4Q1 142 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 MINDY1Q8N5J2 469 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 CEP295NLQ96MC4 621 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 B3GNT5Q9BYG0 378 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 CCSER2Q9H7U1 834 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 DEC1Q9P2X7 70 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 CHORDC1Q9UHD1 332 aaPredicted RBP15.95■□□□□ 0.14
SYNE2-228ENST00000639659 SLC6A14Q9UN76 642 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 CYP8B1Q9UNU6 501 aa15.95■□□□□ 0.14
SYNE2-228ENST00000639659 MYO18AQ92614 2054 aaKnown RBP15.95■□□□□ 0.14
SYNE2-228ENST00000639659 PLXND1Q9Y4D7 1925 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 CACNA1EQ15878 2313 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 E2F8A0AVK6 867 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 FRMD3A2A2Y4 597 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 TRIM24O15164 1050 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 CLIC2O15247 247 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 TULP3O75386 442 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 CST3P01034 146 aaPredicted RBP15.94■□□□□ 0.14
SYNE2-228ENST00000639659 GABRG2P18507 467 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 FAM193AP78312 1265 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 ZNF33AQ06730 810 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 SNRNP35Q16560 246 aaKnown RBP15.94■□□□□ 0.14
SYNE2-228ENST00000639659 HECTD3Q5T447 861 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 SCARA5Q6ZMJ2 495 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 TRMT11Q7Z4G4 463 aaKnown RBP15.94■□□□□ 0.14
SYNE2-228ENST00000639659 LIMS2Q7Z4I7 341 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 NELFCDQ8IXH7 590 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 RGL4Q8IZJ4 473 aa15.94■□□□□ 0.14
SYNE2-228ENST00000639659 NUP93Q8N1F7 819 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms