RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 NAP1L1P55209 391 aaKnown RBP14.86□□□□□ -0.03
CLN3-242ENST00000635958 UBE3AQ05086 875 aa14.86□□□□□ -0.03
CLN3-242ENST00000635958 LLGL2Q6P1M3 1020 aa14.86□□□□□ -0.03
CLN3-242ENST00000635958 FEZF2Q8TBJ5 459 aa14.86□□□□□ -0.03
CLN3-242ENST00000635958 ZNF564Q8TBZ8 553 aaPredicted RBP14.86□□□□□ -0.03
CLN3-242ENST00000635958 SAMD11Q96NU1 681 aa14.86□□□□□ -0.03
CLN3-242ENST00000635958 RHOBTB2Q9BYZ6 727 aa14.86□□□□□ -0.03
CLN3-242ENST00000635958 MRPL17Q9NRX2 175 aaKnown RBP14.86□□□□□ -0.03
CLN3-242ENST00000635958 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.85□□□□□ -0.03
CLN3-242ENST00000635958 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.85□□□□□ -0.03
CLN3-242ENST00000635958 MTMR11A4FU01 709 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 TMEM191CA6NGB0 347 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 ABLIM3O94929 683 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 ARHGEF15O94989 841 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 VNN2O95498 520 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 CPB1P15086 417 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 MYOGP15173 224 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 TCP1P17987 556 aaKnown RBP14.85□□□□□ -0.03
CLN3-242ENST00000635958 CYP2F1P24903 491 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 OR1D2P34982 312 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 CTNNB1P35222 781 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 ROR1Q01973 937 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 CREMQ03060 361 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 RAB33AQ14088 237 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 TPGS2Q68CL5 300 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 DNAJC24Q6P3W2 148 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 RNF19BQ6ZMZ0 732 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 PHLDB2Q86SQ0 1253 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 SCUBE3Q8IX30 993 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 SPPL3Q8TCT6 385 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 C8orf48Q96LL4 319 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 ALS2CR12Q96Q35 445 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 HSFX1Q9UBD0 423 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 IRAK3Q9Y616 596 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 WDR27A2RRH5 827 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 BUB1BO60566 1050 aaPredicted RBP14.85□□□□□ -0.03
CLN3-242ENST00000635958 PALMO75781 387 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 KRT3P12035 628 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 ERVK-21P61565 698 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 SLC6A3Q01959 620 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 HABP4Q5JVS0 413 aaKnown RBP14.85□□□□□ -0.03
CLN3-242ENST00000635958 OLFML1Q6UWY5 402 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 FAM183BPQ6ZVS7 135 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 ARCQ7LC44 396 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 SCML4Q8N228 414 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 ATAD1Q8NBU5 361 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 ZNF461Q8TAF7 563 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 COG1Q8WTW3 980 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 KHSRPQ92945 711 aaKnown RBP eCLIP14.85□□□□□ -0.03
CLN3-242ENST00000635958 C17orf80Q9BSJ5 609 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 ABI2Q9NYB9 513 aaPredicted RBP14.85□□□□□ -0.03
CLN3-242ENST00000635958 AFF4Q9UHB7 1163 aaKnown RBP14.85□□□□□ -0.03
CLN3-242ENST00000635958 LCMT1Q9UIC8 334 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 TMEM59LQ9UK28 342 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 MAFFQ9ULX9 164 aa14.85□□□□□ -0.03
CLN3-242ENST00000635958 TRIOBPQ9H2D6 2365 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 F8VP50 259 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 C2CD2LO14523 706 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 TNFRSF10BO14763 440 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 FBXO21O94952 628 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 CA3P07451 260 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 HAPLN1P10915 354 aaPredicted RBP14.84□□□□□ -0.03
CLN3-242ENST00000635958 RPL17P18621 184 aaKnown RBP14.84□□□□□ -0.03
CLN3-242ENST00000635958 CDR1P51861 262 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 ARPP19P56211 112 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 ADCY1Q08828 1119 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 GLE1Q53GS7 698 aaKnown RBP14.84□□□□□ -0.03
CLN3-242ENST00000635958 OR6B2Q6IFH4 312 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 C11orf63Q6NUN7 778 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 CCNI2Q6ZMN8 369 aaPredicted RBP14.84□□□□□ -0.03
CLN3-242ENST00000635958 SLC26A9Q7LBE3 791 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 SYCE1Q8N0S2 351 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 NOA1Q8NC60 698 aaKnown RBP14.84□□□□□ -0.03
CLN3-242ENST00000635958 FNIP1Q8TF40 1166 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 CEP295NLQ96MC4 621 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 TGS1Q96RS0 853 aaKnown RBP14.84□□□□□ -0.03
CLN3-242ENST00000635958 SELENOOQ9BVL4 669 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 RASSF4Q9H2L5 321 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 LRRC4Q9HBW1 653 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 CNGB3Q9NQW8 809 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 COLQQ9Y215 455 aaPredicted RBP14.84□□□□□ -0.03
CLN3-242ENST00000635958 USP3Q9Y6I4 520 aa14.84□□□□□ -0.03
CLN3-242ENST00000635958 MYO1FO00160 1098 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 TRIM66O15016 1216 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 ATF2P15336 505 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 RFC1P35251 1148 aaPredicted RBP14.83□□□□□ -0.04
CLN3-242ENST00000635958 GRIK1P39086 918 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 RPL7AP62424 266 aaKnown RBP14.83□□□□□ -0.04
CLN3-242ENST00000635958 PM20D1Q6GTS8 502 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 PGLYRP2Q96PD5 576 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 C11orf84Q9BUA3 381 aaPredicted RBP14.83□□□□□ -0.04
CLN3-242ENST00000635958 TRIM7Q9C029 511 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 CRISPLD1Q9H336 500 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 ASNSD1Q9NWL6 643 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 IL37Q9NZH6 218 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 ANAPC7Q9UJX3 599 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 YBX2Q9Y2T7 364 aaKnown RBP14.83□□□□□ -0.04
CLN3-242ENST00000635958 PLXNA4Q9HCM2 1894 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 CHD9Q3L8U1 2897 aa14.83□□□□□ -0.04
CLN3-242ENST00000635958 GOLGA8SH3BPF8 625 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms