RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 COA7Q96BR5 231 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 MAP3K14Q99558 947 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 FSD1LQ9BXM9 530 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 BRINP2Q9C0B6 783 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 CIPCQ9C0C6 399 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 BRD9Q9H8M2 597 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 MLXIPQ9HAP2 919 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 SARS2Q9NP81 518 aaKnown RBP1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 ZNF277Q9NRM2 450 aaPredicted RBP1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 CNNM1Q9NRU3 951 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 TRMT13Q9NUP7 481 aaKnown RBP1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 GNL3LQ9NVN8 582 aaKnown RBP1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 ETAA1Q9NY74 926 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 ZIM2Q9NZV7 527 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 FEZ2Q9UHY8 353 aaPredicted RBP1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 CPA4Q9UI42 421 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 SERPINB13Q9UIV8 391 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 ERRFI1Q9UJM3 462 aaPredicted RBP1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 POLHQ9Y253 713 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 ANKRD6Q9Y2G4 727 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 PCDHA1Q9Y5I3 950 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 CAMSAP1Q5T5Y3 1602 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 HECW1Q76N89 1606 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 NUP160Q12769 1436 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 CASZ1Q86V15 1759 aa1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 KDM5AP29375 1690 aaKnown RBP1.39□□□□□ -2.19
SMARCB1-209ENST00000635578 GLI2P10070 1586 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 MED1Q15648 1581 aaPredicted RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 SAMD9LQ8IVG5 1584 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 INO80Q9ULG1 1556 aaPredicted RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 IFT172Q9UG01 1749 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 CACNA1SQ13698 1873 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 EME2A4GXA9 379 aaPredicted RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 H7C1Q1 480 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 M0QYG6 137 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 MYO1CO00159 1063 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 SLC28A2O43868 658 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 TLR5O60602 858 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 CTNND1O60716 968 aaKnown RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 TULP3O75386 442 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 CAMTA2O94983 1202 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 KIF20AO95235 890 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 AHSGP02765 367 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 GJB1P08034 283 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 POU2F2P09086 479 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 HSPA6P17066 643 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 MALP21145 153 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 FPR3P25089 353 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 CYP2C19P33261 490 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 GCLCP48506 637 aaPredicted RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 RENBPP51606 427 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 PIN1Q13526 163 aaPredicted RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 ZNF267Q14586 743 aaPredicted RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 RAB39AQ14964 217 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 MLC1Q15049 377 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 ASIC2Q16515 512 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 INAVAQ3KP66 663 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 KRT71Q3SY84 523 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 ARHGAP29Q52LW3 1261 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 CCDC93Q567U6 631 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 AWAT1Q58HT5 328 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 KHDC1LQ5JSQ8 128 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 SLC4A10Q6U841 1118 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 LAYNQ6UX15 382 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 TMEM108Q6UXF1 575 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 ZNF813Q6ZN06 617 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 USP45Q70EL2 814 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 PARS2Q7L3T8 475 aaKnown RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 HEATR3Q7Z4Q2 680 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 PIP4P1Q86T03 277 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 DAAM2Q86T65 1068 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 ANKRD13BQ86YJ7 626 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 SUGP2Q8IX01 1082 aaKnown RBP eCLIP1.38□□□□□ -2.197e-7■■□□□ 13.6
SMARCB1-209ENST00000635578 CHPFQ8IZ52 775 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 MPP5Q8N3R9 675 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 TERB1Q8NA31 727 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 ABHD11Q8NFV4 315 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 OSR1Q8TAX0 266 aaPredicted RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 BRIX1Q8TDN6 353 aaKnown RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 ASB5Q8WWX0 329 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 GLG1Q92896 1179 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 SCAMP4Q969E2 229 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 MTFMTQ96DP5 389 aaKnown RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 ZNF479Q96JC4 524 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 SIGLEC11Q96RL6 698 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 CNPPD1Q9BV87 410 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 C1orf43Q9BWL3 253 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 GTPBP4Q9BZE4 634 aaKnown RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 SLC13A1Q9BZW2 595 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 TTYH3Q9C0H2 523 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 TINAGL1Q9GZM7 467 aaPredicted RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 MRPL44Q9H9J2 332 aaKnown RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 LMBRD1Q9NUN5 540 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 PNPOQ9NVS9 261 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 PI4KBQ9UBF8 816 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 NIPSNAP3AQ9UFN0 247 aaPredicted RBP1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 STAP2Q9UGK3 403 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 PCDHA6Q9UN73 950 aa1.38□□□□□ -2.19
SMARCB1-209ENST00000635578 IPPQ9Y573 584 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms