RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 MCRS1Q96EZ8 462 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 ST7Q9NRC1 585 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 NOCTQ9UK39 431 aaKnown RBP20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 SCML2Q9UQR0 700 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 NCANO14594 1321 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 FAM92AA1XBS5 289 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 C2CD4DB7Z1M9 353 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 ABL1P00519 1130 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 GYPCP04921 128 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 LAMP2P13473 410 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 ZNF75DP51815 510 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 SNX16P57768 344 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 CDR2Q01850 454 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 ZP2Q05996 745 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 CCDC186Q7Z3E2 898 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 TMEM150AQ86TG1 271 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 TMEM35BQ8NCS4 154 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 SLC20A1Q8WUM9 679 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 DDX1Q92499 740 aaKnown RBP20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 TASP1Q9H6P5 420 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 TLR8Q9NR97 1041 aaKnown RBP20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 AIPL1Q9NZN9 384 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 GMIPQ9P107 970 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 EPS15L1Q9UBC2 864 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 RAPGEFL1Q9UHV5 662 aa20.12■□□□□ 0.81
SQSTM1-216ENST00000626660 SOBPA7XYQ1 873 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 LOC730098B7Z3J9 87 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 TADA3O75528 432 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 LSM8O95777 96 aaKnown RBP20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 ZBED1O96006 694 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 MMEP08473 750 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 LCP1P13796 627 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 ADIGQ0VDE8 80 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 TRIM72Q6ZMU5 477 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 TMC6Q7Z403 805 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 ZDHHC14Q8IZN3 488 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 ARHGAP18Q8N392 663 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 SYN2Q92777 582 aaPredicted RBP20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 MRFAP1L1Q96HT8 127 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 ULBP1Q9BZM6 244 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 TRPC7Q9HCX4 862 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 CYLDQ9NQC7 956 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 CHORDC1Q9UHD1 332 aaPredicted RBP20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 USP3Q9Y6I4 520 aa20.11■□□□□ 0.81
SQSTM1-216ENST00000626660 XIRP2A4UGR9 3374 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 ZNF840PA6NDX5 716 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 NRG2O14511 850 aaPredicted RBP20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 FBXO21O94952 628 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 USP17L7P0C7H9 530 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 CASP14P31944 242 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 PSEN1P49768 467 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 PDCLQ13371 301 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 STXBP5Q5T5C0 1151 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 MTSS1LQ765P7 747 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 IRF2BP2Q7Z5L9 587 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 MON1AQ86VX9 555 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 MSANTD4Q8NCY6 345 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 C1orf131Q8NDD1 294 aaKnown RBP20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 IPO4Q8TEX9 1081 aaKnown RBP20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 C1QTNF1Q9BXJ1 281 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 SLC4A5Q9BY07 1137 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 SYNCQ9H7C4 482 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 CNGB3Q9NQW8 809 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 SEPT11Q9NVA2 429 aaKnown RBP20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 TTC28Q96AY4 2481 aa20.1■□□□□ 0.81
SQSTM1-216ENST00000626660 TRAV19A0A0A6YYK7 116 aa20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 PFKLP17858 780 aa20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 CDH5P33151 784 aaPredicted RBP20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 AVPR1AP37288 418 aa20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 FMO1Q01740 532 aa20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 KLHL30Q0D2K2 578 aa20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 TSR1Q2NL82 804 aaKnown RBP20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 TXNDC8Q6A555 127 aa20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 SCML4Q8N228 414 aa20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 MAB21L3Q8N8X9 362 aa20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 ZSCAN18Q8TBC5 510 aaPredicted RBP20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 PPP1R13BQ96KQ4 1090 aa20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 AGPAT1Q99943 283 aa20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 CYTH4Q9UIA0 394 aa20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 NUP210Q8TEM1 1887 aaPredicted RBP20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 MYO10Q9HD67 2058 aa20.09■□□□□ 0.81
SQSTM1-216ENST00000626660 A0A1W2PQH9 124 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 C19orf67A6NJJ6 358 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 PIK3R2O00459 728 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 SART1O43290 800 aaKnown RBP20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 ZDHHC11BP0C7U3 371 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 CHRNB2P17787 502 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 PLA2G5P39877 138 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 PRKCIP41743 596 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 RPL34P49207 117 aaKnown RBP20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 HECTD3Q5T447 861 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 SNX30Q5VWJ9 437 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 PM20D1Q6GTS8 502 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 CMTM8Q8IZV2 173 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 WDTC1Q8N5D0 677 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 IRGQQ8WZA9 623 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 GOLGA1Q92805 767 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 SMARCD2Q92925 531 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 SLC46A2Q9BY10 475 aa20.08■□□□□ 0.81
SQSTM1-216ENST00000626660 MIS12Q9H081 205 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms