RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 GTPBP4Q9BZE4 634 aaKnown RBP3.67□□□□□ -1.82
SCN1A-208ENST00000625916 GBA2Q9HCG7 927 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-208ENST00000625916 SNX15Q9NRS6 342 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 MAFFQ9ULX9 164 aa3.67□□□□□ -1.82
SCN1A-208ENST00000625916 TOMM40O96008 361 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 CTSAP10619 480 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 APEHP13798 732 aaKnown RBP3.66□□□□□ -1.82
SCN1A-208ENST00000625916 PRKAR1BP31321 381 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 MTHFSP49914 203 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 EVA1CP58658 441 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 SEC23BQ15437 767 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 CC2D1BQ5T0F9 858 aaKnown RBP3.66□□□□□ -1.82
SCN1A-208ENST00000625916 TMEM63BQ5T3F8 832 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 RNF187Q5TA31 235 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-208ENST00000625916 LMBRD2Q68DH5 695 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-208ENST00000625916 ZNF549Q6P9A3 640 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 VSTM1Q6UX27 236 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 RANBP10Q6VN20 620 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 GAS2L3Q86XJ1 694 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 PRPF38AQ8NAV1 312 aaKnown RBP3.66□□□□□ -1.82
SCN1A-208ENST00000625916 MAFAQ8NHW3 353 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-208ENST00000625916 HSPBAP1Q96EW2 488 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 ZFYVE19Q96K21 471 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 P2RX7Q99572 595 aaKnown RBP3.66□□□□□ -1.82
SCN1A-208ENST00000625916 MS4A7Q9GZW8 240 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-208ENST00000625916 PIH1D1Q9NWS0 290 aaKnown RBP3.66□□□□□ -1.82
SCN1A-208ENST00000625916 USP22Q9UPT9 525 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 DRG1Q9Y295 367 aaKnown RBP3.66□□□□□ -1.82
SCN1A-208ENST00000625916 STXBP5LQ9Y2K9 1186 aa3.66□□□□□ -1.82
SCN1A-208ENST00000625916 TTC3P53804 2025 aa3.65□□□□□ -1.82
SCN1A-208ENST00000625916 PRSS44E7EML9 344 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 CREB1P16220 341 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 DIO1P49895 249 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 CFHR1Q03591 330 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 CCNIQ14094 377 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 KCNB1Q14721 858 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 SLC9C1Q4G0N8 1177 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 UBAP2Q5T6F2 1119 aaKnown RBP3.65□□□□□ -1.83
SCN1A-208ENST00000625916 MPP5Q8N3R9 675 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 RAPGEF4Q8WZA2 1011 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 MAP3K14Q99558 947 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 CGRRF1Q99675 332 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 MGAT4CQ9UBM8 478 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 STAP2Q9UGK3 403 aa3.65□□□□□ -1.83
SCN1A-208ENST00000625916 A0A087WWL8 130 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 M0R3H8 397 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 GTPBP1O00178 669 aaKnown RBP3.64□□□□□ -1.83
SCN1A-208ENST00000625916 CNOT3O75175 753 aaKnown RBP3.64□□□□□ -1.83
SCN1A-208ENST00000625916 ALDH2P05091 517 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 TGFB3P10600 412 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 AKAP5P24588 427 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 THBS4P35443 961 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 STIM1Q13586 685 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 FGL2Q14314 439 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 PTCHD3Q3KNS1 767 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 TMEM240Q5SV17 173 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 ZNF783Q6ZMS7 281 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 GRAMD1CQ8IYS0 662 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 RBMXL3Q8N7X1 1067 aaKnown RBP3.64□□□□□ -1.83
SCN1A-208ENST00000625916 PLBD2Q8NHP8 589 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 MPLKIPQ8TAP9 179 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 DNAJB14Q8TBM8 379 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 MRGPRX1Q96LB2 322 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 CTAGE1Q96RT6 745 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 LUC7L2Q9Y383 392 aaKnown RBP3.64□□□□□ -1.83
SCN1A-208ENST00000625916 WASHC2CQ9Y4E1 1318 aa3.64□□□□□ -1.83
SCN1A-208ENST00000625916 LACTBL1A8MY62 500 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 TMPRSS11DO60235 418 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 EPHA3P29320 983 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 CPA2P48052 419 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 BCAT1P54687 386 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 YPEL5P62699 121 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 CTBP1Q13363 440 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 MTX1Q13505 466 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 ZNF750Q32MQ0 723 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 ZNF793Q6ZN11 406 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 MMP21Q8N119 569 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 KRT78Q8N1N4 520 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 LINC01465Q8N7H1 131 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 ASPSCR1Q9BZE9 553 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 MLXIPQ9HAP2 919 aa3.63□□□□□ -1.83
SCN1A-208ENST00000625916 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-208ENST00000625916 CYSRT1A8MQ03 144 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 BTN3A1O00481 513 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 SPRY2O43597 315 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 SRGAP2O75044 1071 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 VCAM1P19320 739 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 TACR3P29371 465 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 RAB1AP62820 205 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 HSF1Q00613 529 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 RHDQ02161 417 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 HYAL1Q12794 435 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 MFSD13AQ14CX5 517 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 ZNF585BQ52M93 769 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 Q6ZTC4 211 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 ADHFE1Q8IWW8 467 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 PELI3Q8N2H9 469 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 NGDNQ8NEJ9 315 aaKnown RBP3.62□□□□□ -1.83
SCN1A-208ENST00000625916 OR6B3Q8NGW1 331 aa3.62□□□□□ -1.83
SCN1A-208ENST00000625916 KBTBD7Q8WVZ9 684 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms