RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 STRA6Q9BX79 667 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 STN1Q9H668 368 aaKnown RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 RAB20Q9NX57 234 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 C6orf203Q9P0P8 240 aaPredicted RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 PADI4Q9UM07 663 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 ZNF189O75820 626 aaPredicted RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 UNGP13051 313 aaPredicted RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 EEF2P13639 858 aaKnown RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 PORP16435 677 aaPredicted RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 EIF4BP23588 611 aaKnown RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 SERPINB6P35237 376 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 NSFP46459 744 aaKnown RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 ERFP50548 548 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 C1QTNF8P60827 252 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 PDE1BQ01064 536 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 PPIDQ08752 370 aaKnown RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 PTK7Q13308 1070 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 EFTUD2Q15029 972 aaKnown RBP eCLIP11.26□□□□□ -0.614e-7■■■□□ 19.2
UPF3A-212ENST00000619079 GRAMD1BQ3KR37 738 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 OGFRL1Q5TC84 451 aaPredicted RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 TTBK2Q6IQ55 1244 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 TRIM67Q6ZTA4 783 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 NCCRP1Q6ZVX7 275 aaPredicted RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 ENOSF1Q7L5Y1 443 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 TMEM126BQ8IUX1 230 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 ARID3BQ8IVW6 561 aaPredicted RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 ZFP28Q8NHY6 868 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 NKD2Q969F2 451 aaPredicted RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 NACC1Q96RE7 527 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 KLF6Q99612 283 aaPredicted RBP11.26□□□□□ -0.61
UPF3A-212ENST00000619079 ACP6Q9NPH0 428 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 PICK1Q9NRD5 415 aa11.26□□□□□ -0.61
UPF3A-212ENST00000619079 PRR5-ARHGAP8B1AHC4 643 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 E7ESA3 106 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 E9PBE3 544 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 FAM86B1E9PN63 330 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 COPEO14579 308 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 MEIS2O14770 477 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 WDR46O15213 610 aaKnown RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 CBFA2T3O75081 653 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 SUPT3HO75486 399 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 SPAG6O75602 509 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 FAM155BO75949 473 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 PDE5AO76074 875 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 KLHL2O95198 593 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 FAM86B2P0C5J1 330 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 ZSCAN5DPP0CG00 497 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 MAPTP10636 758 aaKnown RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 PMLP29590 882 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 SSTR1P30872 391 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 SLC16A2P36021 539 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 HSPA13P48723 471 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 ARHGAP8P85298 464 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 TMPRSS15P98073 1019 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 ZNF200P98182 395 aaPredicted RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 GABPAQ06546 454 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 SNAPC2Q13487 334 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 NCOA4Q13772 614 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 CCNIQ14094 377 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 QRICH1Q2TAL8 776 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 USP41Q3LFD5 358 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 CCDC92Q53HC0 331 aaPredicted RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 PPP1R2P3Q6NXS1 205 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 FBXL19Q6PCT2 694 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 TSHZ1Q6ZSZ6 1077 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 TPH2Q8IWU9 490 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 BBS5Q8N3I7 341 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 CCDC33Q8N5R6 958 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 GLIS1Q8NBF1 620 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 RILPQ96NA2 401 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 ACAP3Q96P50 834 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 MPHOSPH6Q99547 160 aaKnown RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 C12orf65Q9H3J6 166 aaKnown RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 FAF1Q9UNN5 650 aaPredicted RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 EXOC7Q9UPT5 735 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 FARP1Q9Y4F1 1045 aaPredicted RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 AK5Q9Y6K8 562 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 SCINQ9Y6U3 715 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 CDK5RAP2Q96SN8 1893 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 FOCADQ5VW36 1801 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 K7ENM7 598 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 SLITRK3O94933 977 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 INHBAP08476 426 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 RAG1P15918 1043 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 CD58P19256 250 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 SHMT1P34896 483 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 GPC3P51654 580 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 COPAP53621 1224 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 ALDH18A1P54886 795 aaKnown RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 AQP5P55064 265 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 PLOD1Q02809 727 aaPredicted RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 BTKQ06187 659 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 WASHC5Q12768 1159 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 VGLL4Q14135 290 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 MDH1BQ5I0G3 518 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 C1orf220Q5T0J3 134 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 RARS2Q5T160 578 aaKnown RBP11.25□□□□□ -0.61
UPF3A-212ENST00000619079 KRT39Q6A163 491 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 PGM2L1Q6PCE3 622 aa11.25□□□□□ -0.61
UPF3A-212ENST00000619079 KLHL35Q6PF15 583 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms